Acetivibrio thermocellus DSM 1313: Clo1313_1939
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Entry
Clo1313_1939 CDS
T01933
Name
(GenBank) helicase c2
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ctx
Acetivibrio thermocellus DSM 1313
Pathway
ctx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ctx00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Clo1313_1939
09124 Replication and repair
03420 Nucleotide excision repair
Clo1313_1939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctx03021
]
Clo1313_1939
03036 Chromosome and associated proteins [BR:
ctx03036
]
Clo1313_1939
03400 DNA repair and recombination proteins [BR:
ctx03400
]
Clo1313_1939
Enzymes [BR:
ctx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
Clo1313_1939
Transcription machinery [BR:
ctx03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Clo1313_1939
Chromosome and associated proteins [BR:
ctx03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
Clo1313_1939
DNA repair and recombination proteins [BR:
ctx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Clo1313_1939
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
PDDEXK_1
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
ADU74987
LinkDB
All DBs
Position
complement(2271577..2273934)
Genome browser
AA seq
785 aa
AA seq
DB search
MNEYKKEIKISVRNLVEFVLRTGDIDSSFTGSSRAVEGTRLHKKIQKTQGKEYSPEVFLK
TTVEFDDFFLTVEGRADGVINEDGCFIIDEIKTTTAPLELIDEFYNPLHWTQAKCYAYIH
ALNENLEKIKIRLTYCHLETEEIKYLVSEFDFAELSRFFEELVEKYYVWAKLACDWQVKR
DCSIKVLEFPFEKYRKGQRKLAVAVYKTVTEGKKLYVKAPTGIGKTISTLFPAVKAIGEG
HASKIFYLTAKTVTGGVAKEAFAKMRQKGLLFKTVTLTAKEKICFMEKAVCKPEKCEYAK
GHFDRVNEAIMDILTNEDEIKREVIEEYAKAHRVCPFELALDLTIWADAVICDYNYVFDP
RVYLKRFFSDAGGDYIFLVDEAHNLVDRAREMFSAQLSKKSFLELKKAMKEESPKISKTL
QKLNTFMLGMKKLCGDNDYFVSKEEQSEIYLLLRRLIGECEEYLTDRAKNGIENEDLLQL
YFDALMYVRIAEFYDDRYVTFVEKSDNDVRIKLFCIDPSHLLSEALKRGKAAVFFSATLL
PLSYFKEVLGGGPDDYTMCLDSPFEVNNRCLMIADRISTRYQDRGKSCDEVVQCIKSIVC
AKKGNYIAFFPSYQYMNMIYELFEKECGDIKLYVQSSSMTEKEREDFLERFKADPQETVL
GFCVLGGIFSEGIDLRDDRLIGAIIVGVGLPQICIERDIIRDYYQNKNRLGFEYSYMYPG
MNKVMQAAGRVIRSENDKGVILLIDDRFTNPSYLALFPNEWFPYIRVTGNNISEHVKKFW
SRHGA
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaatataaaaaggaaataaagatatcggtaaggaatctggttgagtttgtgtta
aggaccggtgacattgacagctcttttaccggaagcagcagggccgtcgaaggtacaagg
cttcataaaaaaatacagaaaacccagggcaaggagtatagcccggaagtgtttctgaaa
accactgttgagtttgacgactttttcctcacagttgaaggacgggcggacggtgtaata
aatgaggacggctgttttataattgatgagataaaaacaacaacggcacctttggagttg
atagatgaattctacaatcccctgcactggacacaggccaaatgctacgcatatatccat
gcgttaaatgaaaatttggagaaaataaagataaggcttacctattgccatttggaaaca
gaagagataaaatacctggtcagtgaattcgattttgcagagcttagccggtttttcgag
gaacttgttgaaaaatattatgtatgggcaaagcttgcctgtgactggcaggttaaaagg
gactgttcgattaaagttcttgagtttccttttgagaaatacagaaaaggtcagagaaaa
cttgctgtggctgtttacaagaccgttacggagggtaaaaaactttatgtgaaggcgccc
acaggtattggaaagaccatttcaaccctgtttccggcagtcaaggcaataggggaggga
catgcctcaaaaattttttaccttacggcaaagaccgttacaggcggtgtcgccaaagaa
gcttttgcaaaaatgaggcaaaagggacttttatttaaaacggtgactctcactgcaaag
gaaaaaatatgttttatggaaaaagccgtatgcaaaccggaaaaatgcgagtatgccaag
gggcattttgacagagtgaacgaggcaataatggatatactgaccaatgaggatgaaatc
aaaagagaagttatagaagagtatgcaaaggcccacagagtttgtccctttgagctggcg
ctggatcttaccatttgggccgatgcggtaatttgtgattacaattatgtgtttgatccg
agggtgtacctgaaaagatttttctccgatgcgggcggtgactatatttttctggtggat
gaggcgcacaaccttgtggacagggcaagagaaatgttttcggcgcagctttcgaaaaag
agctttcttgagctgaaaaaggcgatgaaagaggaaagtcccaaaatatcgaaaacactg
caaaagcttaacacatttatgctgggtatgaaaaaactttgcggcgataacgactacttt
gtaagcaaggaggagcaaagtgaaatatacctgcttttaagaagacttatcggtgaatgc
gaagaatatttgacggacagggcaaagaacggaattgaaaatgaggatttgctgcagctt
tattttgatgcccttatgtatgtcaggatagccgagttttatgatgacaggtatgttacc
tttgtggaaaaatccgataacgatgttagaataaagcttttttgtatcgacccttcccat
cttttaagcgaagctttaaaaagaggaaaggcagcggttttcttttcggccacgttgctt
cctttgagttatttcaaggaagttttgggaggagggccggatgattacacgatgtgtttg
gattcaccttttgaagtgaataacagatgcctcatgatagccgacagaatatccacccgt
tatcaggacaggggcaaaagctgcgatgaggtggtgcagtgcataaaatccatcgtttgt
gccaaaaagggaaattacattgctttttttccgtcctatcagtatatgaacatgatttat
gaattgtttgaaaaggaatgcggtgatattaagctttatgttcagtcttcctccatgacg
gaaaaggaaagggaggattttcttgagcgttttaaagcggaccctcaggagacggtattg
ggtttttgcgtgctgggagggattttttccgaaggaattgatcttagggacgacaggctg
ataggggcgattattgttggtgtaggtcttccccagatatgtattgaaagagatatcata
agggattattatcagaataaaaaccggctcggatttgaatactcttacatgtatcccggc
atgaacaaggttatgcaggcggcgggaagagttataaggtcggagaatgacaagggggtt
atacttttaattgatgacaggtttacaaacccaagttatcttgccctttttccaaatgag
tggttcccatatatcagagttacggggaataatatatcagagcatgtaaagaagttttgg
agccgacatggggcttga
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