Clostridium tyrobutyricum: CTK_C00550
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Entry
CTK_C00550 CDS
T04331
Symbol
holB
Name
(GenBank) DNA polymerase III, delta' subunit
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
ctyk
Clostridium tyrobutyricum
Pathway
ctyk03030
DNA replication
ctyk03430
Mismatch repair
ctyk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ctyk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CTK_C00550 (holB)
03430 Mismatch repair
CTK_C00550 (holB)
03440 Homologous recombination
CTK_C00550 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ctyk03032
]
CTK_C00550 (holB)
03400 DNA repair and recombination proteins [BR:
ctyk03400
]
CTK_C00550 (holB)
Enzymes [BR:
ctyk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CTK_C00550 (holB)
DNA replication proteins [BR:
ctyk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CTK_C00550 (holB)
DNA repair and recombination proteins [BR:
ctyk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CTK_C00550 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNApol3-delta_C
AAA
DNA_pol3_delta
nSTAND3
PhaP_Bmeg
AAA_5
Motif
Other DBs
NCBI-ProteinID:
AND83325
LinkDB
All DBs
Position
67784..68728
Genome browser
AA seq
314 aa
AA seq
DB search
MNFDEIIGHYKIKDQIVKSIKLKDFSHAHIIVGEDGIGKSIIARETAALILGKSSDTQCV
DIVECRINGNKKSIGIDEIKGIIEEVNKKPYEGDKKVIIIYNADKITEVAQNALLKTIEE
PPNGIYLILLCEKLDSILDTIQSRCETYKLNRLKDEDIVIFLNRNFPNLPEEERKSVIAF
SDGIPGRAERFVEDSSLHEIRDVTAQVLLELQAEGIEFISKYSLFLFKHKDEWQEILTCI
LSYIRDALIYKETGNKNFLINSDKFNDIKNMCEIFSFNKLNGIINIIKRTRMKLEDNVSP
SLVFDSMLVNMQEV
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
ttgaatttcgatgaaataataggacattataaaataaaagatcaaatagttaaatcaata
aaattaaaagatttttctcatgctcatattattgtaggagaggatggaataggcaaaagt
attattgcccgggaaacagctgctcttatactcggcaaaagtagtgatacccaatgtgta
gatattgttgaatgtaggataaatggcaataagaagtctattggtatagatgagattaag
ggaataatagaagaagttaataagaaaccttatgaaggggataaaaaggtaattataatt
tataatgcggataaaattactgaagtagcacaaaatgctcttttaaaaactatagaagaa
ccaccaaacgggatatatttaattttattatgcgaaaaattagatagtattttagatacc
attcaatcaagatgtgagacatataaattgaacagattgaaagatgaagatatagtaata
tttttaaataggaacttccctaatttacctgaagaagaacgaaaatcagttatagctttt
agtgatggaataccgggaagagctgaaagatttgtagaagattcttcactccatgagata
agggatgtaactgcacaagttttattggaattacaggcagaaggtatagaatttatatcg
aaatactctttatttctatttaaacataaagatgaatggcaggagatacttacatgtata
ttgtcttatataagagatgctctcatatataaagaaactggaaataagaattttcttata
aatagtgataagttcaatgatataaagaatatgtgcgaaatattctcatttaataagtta
aatggtatcattaatattataaaaagaacaaggatgaagctagaggataatgtaagccca
agtctggtttttgactctatgttggtaaacatgcaggaggtgtga
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