Clostridium tyrobutyricum: CTK_C01300
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Entry
CTK_C01300 CDS
T04331
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ctyk
Clostridium tyrobutyricum
Pathway
ctyk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctyk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CTK_C01300 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctyk03021
]
CTK_C01300 (rho)
03019 Messenger RNA biogenesis [BR:
ctyk03019
]
CTK_C01300 (rho)
Transcription machinery [BR:
ctyk03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CTK_C01300 (rho)
Messenger RNA biogenesis [BR:
ctyk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CTK_C01300 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
S1CSD-TOTE-2
AAA_22
NACHT
AAA
AAA_25
Impact_N
AAA_14
ARM_TT21_5th
ABC_tran
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
AND83400
LinkDB
All DBs
Position
150039..151517
Genome browser
AA seq
492 aa
AA seq
DB search
MVNKDVDNMKLAELREFAKNLGIGNIYKYKKAELIEQIKKVSPAYIKRDGLILREKISPK
NEIVHNHKEKKEESTHSLPASRLKHVNDGKAEDSKDSGEEKKEKLKEMINESDSARGVLE
IIENNNYGFLRGKNYLTGPNDIYVSPSQIRRFNLKTGDEVVGKVRIPKEGEKFKALLYVQ
EVNGENPERAVGRKPFETLTPIYPNQRIRLETGSSDLSTRLMDIISPIGKGQRGIIVAPP
KAGKTTLLKKIAQSISINHSEIKLIVVLIDERPEEVTDMQRSIRGEVIYSTFDEEPEHHT
KVAYMVLERAKRMVEQGQNVVILLDSITRLSRAYNLTINPTGRTLSGGLDPGALIMPKKF
FGAARNIEEGGSLTILATALIETGSRMDDMIFEEFKGTGNMEVHLDRKLQERRIFPAIDV
YKSGTRRDDLLFETQEEKDAAFNIRRIMYDENSNQSITEQLINILTKTKDNKEFMGFVSK
VDTNARRLDKSK
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
ttggttaataaagatgtagataatatgaagttagcagaacttagggagtttgcaaagaac
ttaggaataggcaatatatataaatataaaaaggcagagttaattgaacaaataaaaaaa
gtgtctccagcttatataaaaagagatggactcatacttagagaaaaaataagccctaaa
aatgaaatagtacataatcataaagagaaaaaagaggaatcaactcactctcttccagcg
agtagattaaaacatgtaaatgatggaaaagctgaagactccaaggacagtggagaagag
aaaaaggaaaaactcaaggaaatgataaatgagtcagatagtgcaagaggagtacttgaa
attatagaaaataataattatggatttttaagaggtaaaaattatctaaccggtcctaat
gatatatatgtgtctccatcacaaataagaagatttaatttaaaaacaggtgatgaagta
gttggaaaagttagaattccaaaagagggagaaaaatttaaggcccttctatatgttcaa
gaagtaaatggagagaatccagaaagagcagttggtagaaaaccatttgaaactctcacc
ccaatatatcctaatcaaagaataagattggaaacaggaagttcagatttgtcaacaaga
cttatggacataatatcacctataggaaagggacagagaggaattatagtagcacctcct
aaggcgggaaaaactacacttctaaagaaaatagcccaaagtatatcaataaatcattca
gaaataaaattaatagttgtacttatagatgaaaggccagaagaagttacagatatgcaa
agatcaattcgtggagaagtaatatattctacatttgatgaagaacctgaacatcatacg
aaagttgcctatatggtacttgagagagcaaagagaatggtggaacagggacaaaatgta
gtaatacttttagatagtattacaagactttcaagggcttataatctgacaatcaaccca
acaggaaggactctttcaggaggattggatccaggagcacttataatgcctaaaaaattt
tttggcgctgcaagaaatatagaagaaggtggaagccttactatattggcaacagctttg
attgaaacaggaagtagaatggatgatatgatatttgaagaattcaagggaactggaaat
atggaggtccatttagatagaaagcttcaagagagacgaatattccctgctatagatgtt
tataagtcaggtacgagaagagatgacctattatttgaaactcaagaagaaaaagatgca
gcgtttaatataagaagaattatgtatgacgaaaatagtaatcaaagtattacagaacag
cttataaatatacttacaaaaactaaagacaacaaggaattcatgggatttgtaagtaaa
gtggatacgaatgcacgccgactggataaaagtaagtaa
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