Clostridium tyrobutyricum: CTK_C02230
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Entry
CTK_C02230 CDS
T04331
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
ctyk
Clostridium tyrobutyricum
Pathway
ctyk02020
Two-component system
ctyk02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ctyk00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CTK_C02230 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CTK_C02230 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctyk03021
]
CTK_C02230 (rpoN)
Transcription machinery [BR:
ctyk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CTK_C02230 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Sigma70_r4
HTH_23
Sigma70_r4_2
HTH_21
MarR
HTH_IclR
HTH_Crp_2
HTH_38
HTH_5
HTH_17
Motif
Other DBs
NCBI-ProteinID:
AND83493
LinkDB
All DBs
Position
244780..246165
Genome browser
AA seq
461 aa
AA seq
DB search
MNLNFGLNLTQEQKLVMTQQMQLSVRLLQMSSFELKEYIEKEVQENPILDAKDIELNNNN
KEETKLDYKEFIKNIEFDNYSHHSYERNEDKEISPFNFISEKKSLKEYLTEQIRYLGEKD
YVKAVCNYIIENIDRRGYLILSNEELGKELKISKDLSDYCIKIVQSLDPSGIGARNLNEC
LKVQLNRKKLSDENIIQIIDNYLELIAENRYDTIAKKLNIDVKCAQKYGDIIKGLDPKPS
RGFYTGEEVKYIMPDAYIRKIDGEYFILMNDDLVPRLTINSMYKDIIKGEDSKENDKNAL
DYVKDKLNRAVFLIKSIQHRKSTIYRVLEKILEIQRDYFDYGDSYLKPMTLKEISESLDM
HESTISRAIREKYIYTSRGTVKIKNLFTTGISSSLNGENISASIIKMEIKSIVDGEDKKK
PLSDQSMCNLINEKGMNISRRTVAKYREELGIKSSKGRKRY
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
gtgaacttgaattttggactcaatctaacacaagaacaaaagttggtaatgacacagcag
atgcagctttctgtaaggcttctccaaatgtcaagttttgaacttaaagaatatatagaa
aaggaagtacaggaaaatcctattctagatgcaaaagatattgaattaaacaacaataat
aaagaagaaactaaacttgattataaggagtttataaaaaatatagagtttgataattat
agtcatcatagttatgaaagaaatgaagataaagaaatttccccttttaattttatatct
gagaaaaagtcattgaaagagtatttaacagaacaaataagatatttgggtgaaaaggat
tacgtaaaagccgtatgtaattatattatagagaatatagatagaagagggtatttgatt
ctgtccaatgaggaacttggaaaagaacttaaaatttcaaaagacctttcagattattgt
ataaaaattgtacaatctttagatccaagcggaataggtgccagaaatttaaatgaatgt
cttaaagtacaattaaatagaaaaaaattatcggatgaaaatataatacagattatagat
aactacttggaacttattgctgaaaatagatatgatactatagcaaaaaaattgaatata
gatgtaaaatgtgcccaaaaatatggagatataatcaaaggattggatcctaagccatca
cgtggtttttatacaggcgaagaggtaaaatatataatgcctgatgcatatataagaaaa
attgatggagaatattttattttgatgaatgatgatcttgtacctagattgaccataaat
tccatgtataaggatataataaagggtgaagattcaaaagaaaatgataaaaatgcactg
gactatgtaaaggacaaactaaacagagctgtatttttaataaagagtatccaacataga
aaaagtactatatatagagtactggaaaagatacttgaaattcaaagagattattttgat
tatggagacagttatttaaaacctatgactttaaaagaaatatcagaaagtttagacatg
catgaatctactataagcagagcaataagagagaaatatatatacacaagcagaggaacg
gtaaaaataaagaatttatttactactggaatttcttcatctttaaatggtgaaaatatt
tctgcatcgattattaaaatggaaattaaaagtatagtagacggggaggacaagaaaaaa
ccattatctgaccagtcaatgtgcaatttaattaatgaaaagggtatgaatatttcaaga
agaactgtagcaaaatatagagaggaacttggaataaagtcgtcaaaagggagaaaaagg
tactga
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