Clostridium tyrobutyricum: CTK_C17880
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Entry
CTK_C17880 CDS
T04331
Symbol
polC
Name
(GenBank) DNA polymerase III polC-type
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
ctyk
Clostridium tyrobutyricum
Pathway
ctyk03030
DNA replication
ctyk03430
Mismatch repair
ctyk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ctyk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CTK_C17880 (polC)
03430 Mismatch repair
CTK_C17880 (polC)
03440 Homologous recombination
CTK_C17880 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ctyk03032
]
CTK_C17880 (polC)
03400 DNA repair and recombination proteins [BR:
ctyk03400
]
CTK_C17880 (polC)
Enzymes [BR:
ctyk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CTK_C17880 (polC)
DNA replication proteins [BR:
ctyk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CTK_C17880 (polC)
DNA repair and recombination proteins [BR:
ctyk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CTK_C17880 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
HHH_6
tRNA_anti-codon
RNase_H_2
Rv2179c-like
HHH_3
Zn_ribbon_8
DEDDh_C
YhfH
DNA_pol3_a_NI
DUF6282
Gp10-like
FliD_N
Motif
Other DBs
NCBI-ProteinID:
AND85043
LinkDB
All DBs
Position
complement(1783446..1787756)
Genome browser
AA seq
1436 aa
AA seq
DB search
MSTDIIKLLQENIDCNSDIIPEEIKLQKVQYLKKSNKLKVIVKSVNELNFKVKHKIKQIV
SEELGCFNNIDLICYKDISNVSLGEVCNNYWLELVNIISSYIPVCKEFLTKSSKKVEDNT
INIYSGNNFIYNFLKNKNLEKLMHKVIVDIFGIECTVFLIYDKNLYNEKFLEESQNKEKK
YIESMLKNRSIVPNKVQNKTTSKRNSAFKNENREVKSGSIIFGKPITGAPMEIKDITEVQ
GIVVIRGTIFKKEIIETKTGRKIVTFYITDYTSSITVKFFPRPRDAERIIEEIKEGLYCT
VRGESVNDPYARELVIMAKDIVKSIKTKKTDNASKKRVELHLHTQMSAMDAVSSASDLIE
RAASYGHRAIAITDHGVVQAYPEAMAAAKKYNIKVIYGIEAYLVDDGVPIAIGGEERNLD
DTYVVFDIETTGFSSINDKIIEIGAIKIKDGKIIDRFSEFVNPQIPIPGRIVDLTSITDS
MVSGADPIEKILPEFIDFIGDSVVVAHNAGFDTGFIKKNCRDMDMEFKNPIVDTVLLSRF
LFPELKKFKLNVVAKHLGISLENHHRAVDDARATADILLRCFKILKDRNILNLGKINSEF
LKNIDIKKEPTYHLIILVKNQIGLKNLYKLVSFSNLDYFFKRPRMPKSLIMKYKEGLIIG
GACEAGQIYREVLSGKSDSELEHTLKFYDYLEIQPTGNNEFMIRNGTVNGQEELEKINKR
ICYLGDKYNLPVVATGDVHFMDEKDEVFRRIIMAGRGFSDADDQPPLYFRTTEEMLEEFQ
YLGTEKAEEVVIDNTNKITDMIGDVKPIPDETFPPKIEGAEEQIKDMTLHKVHSVYGDKL
PDIVEKRLDKELNSIINNGYAVLYLIAQKLVAKSSEDGYLVGSRGSVGSSFVATMSNITE
VNGLPPHYVCPKCKHSEFITDGSVSSGADLPEKKCPKCGTDMRRDGHDIPFETFLGFNGD
KEPDIDLNFSGEYQSVVHKYTEVLFGKGHVFKAGTIGTIAEKTAYGYVKKYLSEKNITAP
QAEIERLTIGCTGIKRTTGQHPGGVMVVPADNEIYNFTPVQHPADDNDTDIITTHFDYHS
ISGRLLKLDILGHDDPTVLRMLQDLTGLDPKKIPLGDHKVMSLFTSPEALGVTAEELGCP
VGTYGLPEFGTKFVRQMLLDTKPKNFADLVRISGLSHGTNVWLNNAQYYIKEGYTTLSDC
IACRDDIMMYLLNKGLPPKDAFTIMEKVRKGKGLTEEREALMREHDVPDWYIDSCKKIKY
MFPKGHAVAYVMMAVRIAYFKVYYPKAYYATYFTVRADEFDVDIIIKGEESIKRKMDEIY
TMGNNVTQKEKGLLTILELSYEMYKRKIKFLPVDIYKSDAVKFLIEDEGIRIPINALQGI
GENAAKNIVKGREQGEFISKEDLKMRGKASKSAIEMLDVHGCLKGLPETNQLSLFA
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
atgagtactgacattataaaacttttgcaggaaaatatagattgcaatagtgatattatt
cctgaagaaataaagctgcaaaaggttcagtatttaaaaaagagcaataaattaaaagta
attgttaaatcggttaatgagctaaatttcaaggtaaaacataaaataaagcagatagtt
agtgaagaattaggatgctttaataatattgatcttatatgttataaggacatatcaaat
gtatccttaggcgaagtatgcaataattattggcttgaattagtaaatataatttcctcg
tatattcctgtatgtaaagaatttttgactaaatcttcaaaaaaggtagaagacaatact
ataaacatatatagtggaaataatttcatatacaattttctaaaaaataaaaatttagaa
aagcttatgcataaagttatagtggatatatttggaatagaatgtactgtgtttttgata
tatgacaaaaatctttataatgagaaattcttagaagaaagccagaacaaggaaaaaaag
tatatagagagtatgctgaaaaataggtctatagtaccaaataaggttcaaaacaaaaca
acatctaaaagaaatagtgcttttaaaaatgaaaatcgagaagttaaatccggatctatc
atatttggaaaaccgataactggagcacctatggaaataaaagatataacagaagttcaa
ggtattgtagttataaggggaactatatttaaaaaggaaattatagaaactaagacagga
agaaaaatagttacattttatataacagattatactagttctattacggttaagtttttc
ccaaggccaagagatgcagagagaataattgaagagataaaggaaggactttactgtact
gtaagaggagaatctgtaaatgatccttatgcaagagaattggtaataatggcaaaggat
atagtaaaatccattaagacaaaaaagacggataatgcatctaaaaagagagtagaacta
catcttcatacacagatgagtgccatggatgctgtaagttctgcctcagatcttatagag
agagccgcaagttatggacatagagctatagctataacagaccatggtgtagttcaagct
tatcctgaagctatggctgctgcaaaaaaatataatataaaagttatatatggtatagaa
gcttatctagtagatgatggtgttccaattgccataggaggagaggaaagaaacctagat
gacacctatgtagtatttgatattgaaactacaggattttcaagtattaatgataaaata
atagagataggtgcaattaaaattaaagatggaaaaataatagacagatttagtgaattt
gtaaatcctcaaattccaatacctggccgtattgtggatcttacaagtattacagattct
atggttagtggtgcggatccaatagagaaaatactacctgaatttatagattttatagga
gattcagtagtagtagctcataatgcaggatttgacacagggtttataaagaagaattgc
agggatatggatatggaatttaaaaacccaattgtggatacagtacttctttctagattc
ctgtttcccgaattaaagaagtttaaattaaatgtagtggcaaaacatctgggtatatcc
cttgaaaatcatcatagagcagtagacgatgcaagagcgacagccgatatacttttaaga
tgttttaaaattcttaaagatagaaacatacttaatcttggaaaaattaatagtgaattt
ttaaaaaatatagatataaaaaaggaacctacatatcatcttataattttagtaaaaaat
cagatcggattaaaaaatctatataaactagtttcattctctaatcttgattattttttt
aaaaggcctagaatgcctaaaagtcttataatgaagtataaggaaggacttatcataggc
ggtgcttgtgaagcaggacaaatttatagagaagttttaagtggaaagagtgatagtgaa
cttgaacatacattgaagttttatgactatctggagatacagcctacgggtaataatgaa
tttatgataagaaatggaactgtaaatgggcaagaagaacttgaaaaaataaataagaga
atttgttatcttggagataaatataatcttccggtagttgctacaggagatgtacatttt
atggatgaaaaagatgaagtatttagaaggataataatggctggcaggggtttctctgac
gcagatgatcagccgcctttatattttagaactactgaggaaatgcttgaagagttccaa
tatcttgggacagaaaaggcagaagaagtagttatagacaacacaaacaagattaccgat
atgataggtgatgttaaaccgataccggatgaaacatttcctcctaagatagaaggtgca
gaagaacagataaaggatatgacattacataaagtacattccgtatatggtgataaatta
cctgatatagtagaaaaaagactggataaagaattgaattccataataaacaacggctat
gctgttttatatctaattgcacaaaaacttgtagcaaagtcatcagaagatggatatctt
gtaggatccaggggatctgtaggatcttcttttgttgctaccatgtcaaatattacagag
gtaaatggccttccaccacactacgtttgccctaaatgtaaacacagtgaatttattacg
gatggttcagtaagttctggtgcggatcttccagaaaagaaatgcccaaaatgtggaact
gatatgagacgtgatggacacgatataccatttgaaacattccttggttttaatggagat
aaagagcctgatatagatttgaacttttcaggtgaatatcaatctgtagtacataaatat
acggaagtattgtttggtaaaggacacgtttttaaagctggaactattggaactatagct
gaaaagacggcctatggatatgttaaaaaatatttatcagagaaaaatataacagcaccc
caggctgaaatagaaaggcttacaattggatgtactggtataaagagaactacagggcag
caccctggtggagtaatggtagttccagctgataatgaaatatacaattttactccagtt
caacatccggcagatgataatgacacagatataataaccacgcattttgattatcactcc
ataagtggtagattattgaaactggatatattgggtcatgatgaccctactgttttgaga
atgcttcaggatttgacaggattggatcctaaaaaaattcctctgggggatcataaagtc
atgagcctttttacttcaccggaagcattaggagttactgctgaggaactgggttgtcct
gttggaacatatggattacctgagtttggtacaaaatttgtaaggcagatgcttttggat
acaaaacctaagaattttgccgatttagtaagaatatcagggctatctcatggtaccaat
gtatggttgaataatgctcagtattatataaaggaaggatatactacgttaagcgattgt
atagcatgtagagatgatataatgatgtatttgcttaacaaaggtttacctccgaaagat
gcatttaccataatggagaaagtgagaaaaggaaaaggtctaacagaagagcgagaagca
cttatgagagagcatgatgtaccagattggtatatagattcatgtaagaagataaaatac
atgtttcctaaagggcatgccgtggcatatgttatgatggcagttagaattgcctacttt
aaggtatattatcccaaggcttattatgctacttattttacagttagagctgatgaattt
gatgtagatataattataaaaggggaagaatcaataaagagaaaaatggatgaaatatat
actatgggtaataatgttacacagaaagagaaagggctcctaacaatcttagaactttct
tatgagatgtataaacgaaaaataaaatttcttccagtagatatctataaatcggatgct
gtaaagttcttaatagaagacgaagggataaggattcctataaatgcacttcagggtata
ggagaaaatgcagcaaaaaatatagttaaaggcagagaacaaggagaatttatatcaaaa
gaagatttaaaaatgagaggtaaagcttctaaaagtgcaatagaaatgctagatgttcat
ggatgcctaaaaggacttccagaaacaaatcagctttctttgtttgcataa
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