Clostridium tyrobutyricum: CTK_C26120
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Entry
CTK_C26120 CDS
T04331
Symbol
pcrA
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ctyk
Clostridium tyrobutyricum
Pathway
ctyk03420
Nucleotide excision repair
ctyk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ctyk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CTK_C26120 (pcrA)
03430 Mismatch repair
CTK_C26120 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctyk03400
]
CTK_C26120 (pcrA)
Enzymes [BR:
ctyk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CTK_C26120 (pcrA)
DNA repair and recombination proteins [BR:
ctyk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CTK_C26120 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
CTK_C26120 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
Viral_helicase1
AAA_30
UDPG_MGDP_dh_C
Motif
Other DBs
NCBI-ProteinID:
AND85856
LinkDB
All DBs
Position
complement(2589580..2591820)
Genome browser
AA seq
746 aa
AA seq
DB search
MNLRNLLNKEQYEAVTTIEGPLLILAGAGSGKTRVLTYRIAHMIQDLNIYPSKILAITFT
NKAAGEMKDRVKALVGNEADNMWISTFHSSCVRILRREIDKLGYNKNFAIYDSYDQKVLI
KQCMEELDIDEKYITGRELINKISSQKDNLISAERYKMENESNLRLNKVADVYMLYQKKL
KNNNALDFDDLIYKTVQLFKENSDVLEFYQRKFQYIMIDEYQDTNKSQYELVELLAKSHK
NICVVGDDDQCIYEWRGADIRNILDFEKDYPNTKVIKLEQNYRSKANILKAANDIISNNS
ERKTKVLRTENDNGDKIKLYRAYSDIDEGMYVSSQIKKICREQNKHYRDFAILYRTNAQS
RVFEDVFMKSNIPYRIVGGLKFYDRKEIKDIMSYLKFINNPLDDVSLRRIINEPKRSIGN
TTVDKVQNFAASMDECMYSVLLDIDEVLSLPKRSVSSIKKFVSLINSFIRSRDKISVSSL
IKEVIETTGYIDKLKDLKDAESVSRIENLKELVSAAVEFESTSEDKSLSAFLEKVTLVSD
IDNFDEDADSVVIMTVHSAKGLEFPVVFMVGMENGIFPGSQSLENSAEMEESRRLCYVGI
TRAKERLYMTSAESRRVFGRMVSYSQSEFLSEISSSLKEYDNINNNITTFGNRSNFNDNK
SWMPRMTKKTSFEVKRDVTIKNKSEEIVNTLKAENVKAGMKVKHNKFGIGTIVSVSKNGS
DIKLTIAFDKNGIKNLMYGVARLEAV
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaagaaaccttttaaataaagaacaatatgaagctgttactactatagaagga
ccacttttaatactggcgggagcgggatctggtaaaaccagggttcttacttacagaata
gctcatatgattcaggatctaaatatttatccttctaaaattcttgctataacttttaca
aataaagctgctggagaaatgaaagacagggtgaaagcacttgttggaaatgaagcagat
aatatgtggatttctacttttcattcaagttgtgtaagaatacttagaagagaaatagat
aaactcggttataataaaaattttgccatatatgatagctatgatcaaaaagttctaata
aagcaatgcatggaagaattggatatagacgaaaaatatataacaggcagggaattaata
aataaaataagttcacagaaggacaatctaatatctgctgaaaggtataaaatggaaaat
gaatccaaccttagattaaacaaggttgcagatgtatatatgctatatcaaaaaaaatta
aaaaacaacaacgcactggattttgatgacttaatatataaaacggttcagctttttaag
gaaaatagtgatgtacttgagttttatcagagaaaatttcaatatataatgatagatgaa
taccaggataccaacaagtcacagtatgaattagttgaattgcttgcaaagtctcataag
aatatatgtgtagtcggtgatgacgaccaatgtatttatgagtggagaggtgcggatatt
agaaatattctggactttgaaaaagactatcccaatacaaaggtaataaaacttgaacag
aactatagatcaaaggcaaatatattaaaagctgcaaatgatattataagtaataattct
gaaagaaagaccaaagttttaagaactgagaatgacaatggtgacaagatcaagttgtat
agggcttattctgatatagatgagggaatgtatgtttcaagtcaaataaagaaaatttgc
agagaacaaaataaacattatagggattttgccatattatatagaacaaatgctcagtcc
cgagtttttgaagatgtatttatgaagagcaatataccatatagaatagttggaggatta
aaattttatgacagaaaggaaataaaggatataatgtcctatctgaaatttataaataat
cctcttgatgacgtaagcttgagaagaataataaatgaaccaaaaagaagtattggaaat
actacagtagataaggtacagaattttgctgcatctatggacgagtgtatgtatagcgta
ttacttgatatagatgaagtactgagcctgcccaagagaagtgtttcttccataaaaaaa
tttgtaagccttataaatagctttataagaagtagggataaaatctcagtttccagtttg
ataaaggaagttatagagactacaggctatattgataaactcaaggatttaaaggatgca
gaatctgtaagcagaatagaaaatttaaaggagcttgtatcagctgctgtagaatttgaa
tctacatctgaagataaatcattgtcagcatttttggagaaagtcacacttgtatctgat
atagacaattttgatgaagatgcagatagtgtagtaatcatgaccgtacatagtgcaaag
ggacttgaatttcctgttgtatttatggttggcatggaaaatggaatattcccaggaagc
cagtctctcgaaaattcagctgaaatggaagagtcaaggagactttgctatgttggaata
accagagcaaaagaaagattatatatgacttcagctgaaagtagaagagtttttggaaga
atggtatcatatagtcaatctgagtttctaagtgaaatatcaagcagtttgaaggaatat
gataatattaataataatataacaacctttgggaatagaagcaattttaatgacaataag
tcatggatgcctagaatgactaaaaaaacatcttttgaagtcaaacgtgatgttacaatt
aaaaataaaagtgaagaaattgtcaatacattaaaggctgaaaatgtaaaggcaggtatg
aaagtgaaacacaataaatttggcataggtactattgtaagtgtaagtaaaaatggcagt
gatataaaattgacaatagcttttgataaaaatggaataaaaaatctcatgtatggagtt
gcaagacttgaagcagtataa
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