Clostridium tyrobutyricum: CTK_C29460
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Entry
CTK_C29460 CDS
T04331
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ctyk
Clostridium tyrobutyricum
Pathway
ctyk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ctyk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CTK_C29460 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctyk03400
]
CTK_C29460 (mfd)
Enzymes [BR:
ctyk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CTK_C29460 (mfd)
DNA repair and recombination proteins [BR:
ctyk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CTK_C29460 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
MFD_D3
RecG_dom3_C
IstB_IS21
Zot
Motif
Other DBs
NCBI-ProteinID:
AND86184
LinkDB
All DBs
Position
complement(2951758..2955288)
Genome browser
AA seq
1176 aa
AA seq
DB search
MRLNGLIKPIKDSKEFKNIMNSVEDNNYPIGIVGISESGRSYLIDSVYNELNKSFLILTH
SDMEARKLYEDLSFYETKVYYFPTKEVVFYNYNIEAISGDLRWERLKVIRQMLNRGKKII
ITCIEALSYTYIPVKLYKQYTFKLSVGKNLELNELSKSLIQSGYERVDVVNSKGQFSIRG
GILDIYVPILAQAYRVELFGDEIESIRSFNTETQRSIEKVKSIEIFPAKEIILDNEKIEN
GCKAIEKDKSLIVEKLENVKDYDTKKNIDEIINRDLESLKESWSFETIDSFLPYFYDTPS
LFLDYVKDYLVILDDINRCNGKLDSVYFEFEQNYRNTLEKGSVLPKQFELIVDKSKILEN
LKDRDIITMDAIPKSNKELVPKTIVEFSEITLNNYKDKMDLFIEDIKQKKLNGFKILILA
GTRPRGERLAQTLRDRDIESTYKDNVDEIKSGEIVITFGSQLNGFEYPDLKLSIISNRDA
FGVSKRKKRKKSPRKGVGKITSFTELRPGDYVVHVNHGIGVYKGIKQLEVQGHKKDYLEL
MYYSDDKLYVPVEQFDMVQRYIGNEGKNPKINKLGSADWAKAKRKAKKSIEQIAEDLVKL
YAVRSTVKGYKYSKDTVWQKQFEDEFPYEETPDQLSAIEDIKTDMQSDKVMDRLLCGDVG
YGKTEVAVRAVFKAVMDGKQVAFLVPTTILAQQHYNNFVKRFSDFPIKIDMISRFRTASE
QKKTIKSLKSGELDILIGTHRILQKDVQFKDLGFLIIDEEQRFGVTHKEKIKKMKKNIDV
LTLSATPIPRTLHMSLVGVRDISVIETPPEQRRPIQTYVVEYNDQLIRDALLREIGRGGQ
VYFVYNRVESISKMAVYITKLVPEARLTVAHGQMQERELETAMISFMNNESDVLLCTTII
ETGMDIQNVNTMIIYDADKMGLSQLYQLRGRVGRTDKIAYCYLTYRKDKILTEVAEKRLK
AIKDFTELGSGFKIALKDLEIRGAGNMMGSSQHGHMAAIGYDLYCNMLEDTIKLIKGEIN
EEPIETTVELKVDAYIPNDYINNEVQKIEIYKKIAAIDSYDDMMDIQEEIEDRFSIIPES
VYNLMNISYIRSVGKKLGIEEIKDNKDEVVFLFQNEERISQDVLKSVLKHFGRNIILKLS
GKPGFGYRIKDIKRKDLILKVKEMIEFMLKAKDKND
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagactaaatggacttataaagccaattaaggatagtaaagaatttaaaaatataatg
aattcagtagaagataataattaccctattgggatagttggaatttcagaatctggaaga
agttatttaattgattctgtatataatgagttaaataaatcattcctgattcttactcat
agtgatatggaagctagaaaattatatgaggatttatctttttatgaaacaaaagtatat
tactttccaacaaaggaagtagttttttataattataatatagaagctatatctggtgac
ttgagatgggaaagacttaaagtaatcaggcagatgttaaatagaggtaaaaaaataata
attacatgtatagaagcattatcttatacatatatacccgtaaaattgtataaacagtat
acttttaaactatcagtaggtaaaaatcttgaattaaatgagctgagcaaaagtttaatt
caaagtggatatgaaagagttgatgttgtaaattctaaaggtcaattttctataagaggt
ggaatattagatatatacgtacctattttagcacaagcttatagggtggaattgtttgga
gatgaaattgaatctataagaagttttaatacagaaacgcagagaagtattgaaaaagtt
aaaagtatagaaatatttcctgccaaggagataatacttgataatgaaaaaattgaaaac
ggatgtaaagctatagaaaaagataaaagtttgattgtagaaaaactagaaaatgttaag
gattatgacactaaaaaaaatatagatgaaataataaatagagatttagaatctcttaaa
gaaagttggagttttgaaactatagatagttttttgccttatttttatgatactccatct
ttgttcctggattatgtgaaagactatcttgtaattttagatgacataaatagatgtaat
ggcaaattggacagtgtgtattttgaatttgaacagaattatagaaatacccttgaaaag
ggaagtgttttaccaaaacaatttgaattaatagtagataagtctaaaatattggaaaat
ttaaaagatagagatattataacgatggatgctattcctaaatccaataaggaattagtt
cctaaaactatagttgaattttccgagataaccctcaataattataaagataaaatggat
ttatttattgaggatataaaacaaaaaaaattaaatggatttaaaattttgattttagcg
ggtacaaggcctaggggagaaagattagctcaaacgttaagggatagagatatagaaagt
acttacaaggataatgtagatgaaattaaatcaggtgagatagtaataacttttggaagt
caattaaatggttttgagtatcctgatttaaaactttcaattatatcaaacagggatgct
tttggcgtatcaaagcggaaaaagcgaaaaaaatctccaagaaaaggtgtaggaaagata
acaagttttactgaacttagacctggggattatgtagttcatgtaaatcatggtataggt
gtatacaagggtataaaacaacttgaagttcaaggacataaaaaagattatctagagctt
atgtactattcagatgataaattatatgtaccagtagaacagtttgatatggtacaaaga
tatataggaaacgaaggtaaaaatccaaagataaataaacttggaagtgcagattgggcc
aaggctaaaagaaaagctaaaaaatctatagaacaaatagcagaagatctggtgaaatta
tacgcagtaagatctacagttaaaggatataaatattccaaagatacggtatggcagaaa
caatttgaagatgaatttccctatgaggaaactccagatcaactgtcagcaatagaggat
ataaagacagatatgcaatcagataaagttatggatagactcttatgtggagatgtggga
tatggcaagaccgaagtagcagtaagggctgtttttaaagctgttatggatggaaaacag
gtagcatttttagtacctactaccatacttgcacaacaacattataataattttgtaaag
aggttttcggacttccctataaaaatagacatgataagtagattcaggacagcatcagaa
cagaaaaaaaccataaagtctttaaaaagtggagaactggatatacttataggtacgcat
agaatacttcaaaaagatgttcaatttaaagatctaggatttcttataatcgatgaagaa
cagagatttggagttactcataaagagaaaataaaaaaaatgaaaaagaatatagatgta
ctgaccttaagtgctacacctatacccaggacactccatatgtctctagtaggagtaagg
gatataagcgtaatagaaacgccaccagagcagagaaggccaatacaaacttatgtagta
gaatataatgatcaattaataagagatgctttgttaagggaaataggcagaggaggccag
gtatactttgtatacaacagggtagagagtataagcaagatggcagtctatattactaaa
ctcgtacctgaggctagattaactgtagctcatggacaaatgcaggagagagaacttgaa
actgcaatgatttcatttatgaataatgaatccgatgttttgctatgtaccactataata
gaaacaggaatggatattcaaaacgtaaatacaatgattatttatgatgcggataaaatg
ggtttatctcagttatatcaattaagaggaagagtgggaagaacagataagatagcttat
tgttaccttacatatagaaaagataaaatattaacggaagttgcagaaaagagacttaaa
gccattaaggactttacagaattgggatctggctttaaaattgctctaaaagatttagaa
ataagaggagcaggtaacatgatgggatcatcccaacatggtcatatggcagctatagga
tatgatctatactgtaatatgcttgaggatactattaaattgataaaaggtgagataaat
gaggaaccaatagagactacggtagaattgaaagtagatgcatatatacctaatgattat
ataaacaatgaagtacagaagatagaaatatataagaagatagctgccatagattcatat
gatgatatgatggatatacaagaagaaatagaagatagattttctattataccagaatca
gtttataatcttatgaacatatcctacataagaagtgttggcaaaaaacttggaatagag
gaaataaaagataataaggatgaagtagtatttctattccaaaatgaagaaagaattagt
caagatgtcttaaaatctgttttaaagcactttgggagaaatataattttaaaattaagt
ggcaaaccaggttttggatatagaattaaggatattaaaaggaaagatttgatattaaaa
gtaaaggagatgatagaatttatgttgaaagctaaagacaaaaacgattaa
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