Cotesia typhae: 141531842
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Entry
141531842 CDS
T11099
Symbol
Mtr4
Name
(RefSeq) exosome RNA helicase Mtr4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ctyp Cotesia typhae
Pathway
ctyp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctyp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141531842 (Mtr4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctyp03019
]
141531842 (Mtr4)
03041 Spliceosome [BR:
ctyp03041
]
141531842 (Mtr4)
03009 Ribosome biogenesis [BR:
ctyp03009
]
141531842 (Mtr4)
03016 Transfer RNA biogenesis [BR:
ctyp03016
]
141531842 (Mtr4)
Enzymes [BR:
ctyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141531842 (Mtr4)
Messenger RNA biogenesis [BR:
ctyp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
141531842 (Mtr4)
Spliceosome [BR:
ctyp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
141531842 (Mtr4)
Complex C
U4/U6.U5 tri-SnRNP related factors
141531842 (Mtr4)
Ribosome biogenesis [BR:
ctyp03009
]
Eukaryotic type
Pre-60S particles
Helicases
141531842 (Mtr4)
Transfer RNA biogenesis [BR:
ctyp03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
141531842 (Mtr4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
Phi812_weld_lid
ATPase_2
nSTAND3
AAA_22
PIN_TASOR
Motif
Other DBs
NCBI-GeneID:
141531842
NCBI-ProteinID:
XP_074105985
LinkDB
All DBs
Position
Unknown
AA seq
1012 aa
AA seq
DB search
MDFGVEAFDVFDEENDNEAEIISTVIDSENNDIKSHVSSTKRELEEDHDVSSKKQKVESI
LEDINLDDLISQIKVHKIETIESCTHEVAVPPDHEYIPLEIKTTPPAKEYKFVLDPFQKE
AILCIENNQSVLVSAHTSAGKTVVAEYAIALSLRDKQRVIYTTPIKALSNQKYREFYEEF
KDVGLVTGDVTINPTASVLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYMRDKERGVVW
EETLILLPDNVHYVFLSATIPNARQFVEWVTHLHHQPCHVVYTDYRPTPLQHYIFPAGGD
GIHLVVNEDGQFKEDNFNRAMNCLQNGDAAKGDLKGRKGGPRGSNASQSNIFKIVKMIME
RTFAPVIIFSFSKKDCEAYAMQMSQLDFNTEAERKLIDDVFNNAMDVLSDEDRKLPQVEN
VLPLLKRGIGIHHGGLLPILKETVEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRK
FDGKDFRWITSGEYIQMSGRAGRRGLDEKGIVILMVDEKVSPAVGKDIVLGKADPINSAF
HLTYNMVLNLLRVEEINPEYMLERSFYQFQNQASIPILFNKVKELQQSYDDLVVDKFNQI
APYHDIRQQLDRLKVDYRSYITRIEYLLKFLQPGRMIKIKNGNNIFDWGVVINFRKKNSK
NPKESAVIIIDMLLHISKDSTECAPMPCGESEDGEFEIVPVMHTLISEISTLRLPIPQDL
RPPDNRKSVLKSIKEVKKHFPDGIPLLDPLKDMGIADSTFEDIVKRIKILEGKLYAHPLH
KDPGLSKLYNEFLRKDELGSELKQAKQELKKAKSVLQMDELKCRKRVLRRLGYCTAADVI
ELKGRVACELNGADELLLTEMIFNGLFNSLNVPQMTALLSCFVCDEKSNEMPKSTNELSG
PLRQMQDLARRIAKVSAEANLEIDEDSYVERFKPYLMDVVYSWCKGASFFQICKMTDIFE
GSIIRCMRRLEEVLRQLIQAAKNIGNSDLENKFSEAIKLLKRDIVFAASLYL
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atggattttggcgtggaagcattcgacgtgtttgacgaggaaaacgataatgaagccgag
attatttcaacggtgatagactccgagaacaacgacataaagtctcatgttagttcgacc
aagcgtgagcttgaggaagaccacgatgttagtagtaagaaacagaaagtcgagtccatc
ttagaggatattaacttggacgatttgatatcgcagataaaagtccataagatagaaaca
attgaatcgtgtacccatgaagtagcagttccgccagaccacgagtacattccactggaa
ataaagacaactcctccggcaaaggagtacaaatttgttttggatccttttcagaaggaa
gcgattctttgcattgaaaacaaccagtctgtgctggtgtctgctcacacttctgctgga
aagactgttgtcgccgagtacgcgatagcattgtcattgcgcgacaagcagcgagtaatt
tacacaactccaataaaagctctgagtaaccaaaagtaccgagaattctacgaagaattt
aaagacgtcggattggtaactggagatgtaacaataaacccaacagcatctgtgcttata
atgaccacggaaattctccggaacatgttgtaccgcgggtcggaagtaatgcgtgaagta
ggttgggtgatcttcgacgagatccactacatgagagacaaagagcggggagtagtctgg
gaagaaacgttgattcttcttcctgacaacgttcattatgtgtttctgtcagcgacgatt
cccaacgcgagacagttcgtcgagtgggtgactcacctgcaccaccagccttgccacgtg
gtctacactgactaccgtccaactcccctgcagcactacatatttccagctggtggtgat
ggtattcacttggtcgtcaatgaggacggtcagttcaaggaggacaacttcaaccgagca
atgaattgcctccaaaatggtgacgctgccaaaggtgacctcaaaggccggaagggcgga
cctagaggttctaatgcgtctcagtcgaatatttttaagattgtcaaaatgataatggag
agaaccttcgcgcctgttattattttcagcttttctaagaaagattgtgaagcgtatgcg
atgcaaatgtcccagctggactttaatactgaagctgagcggaagctcatcgacgatgtc
ttcaataatgctatggatgtgctcagtgatgaagatcgcaagcttcctcaggttgaaaat
gttctcccgctgctgaaacgcggcattggaatccatcatggaggactgctgccaatccta
aaagaaactgtagaaattttattcggagaaggtttgataaaagctctcttcgcaacggaa
acattcgcaatgggtttaaacatgccggctaggacagttctcttcacagcaccccgcaag
ttcgacggcaaggacttccgctggataacctccggcgagtacatccaaatgtctggtcga
gctggtcgtcgaggtctcgacgagaagggtatagtaatcctgatggtcgacgaaaaagta
agtccagctgttggcaaggatatagtcctcggaaaagccgacccgataaactcggctttc
catctgacctataacatggtgctgaatttactccgagtcgaagaaataaaccctgagtac
atgctggagcggagtttctaccagttccagaaccaagcttccattcctattttgttcaac
aaagtcaaagagctccagcagtcgtacgacgatctggttgttgataagttcaaccagata
gctccttaccacgacattcgtcagcagttggatcggctgaaggttgattacagaagttac
atcaccagaattgaatatttattgaaatttcttcaaccgggtaggatgataaagataaaa
aacggcaacaatatttttgactggggagtcgttattaatttccggaagaaaaattcaaag
aacccgaaagaaagcgcggttattatcatcgacatgcttcttcacatttcgaaggactca
acagagtgcgcgccgatgccttgcggagaaagcgaagacggagagtttgaaatcgttcct
gtgatgcatactttaatttctgagatcagtacactgagattgccgattccccaggacttg
agaccgcctgacaaccggaagagcgtcttgaagtcgataaaggaagtgaagaaacacttt
cccgacggaattcccctgctggacccgctgaaggacatgggaatcgcggactcgaccttc
gaagacatcgtcaagaggataaagatccttgaaggtaaattatatgcgcatcctttgcac
aaagacccgggattgagcaaactctacaatgagtttctgcgcaaggacgagctcgggagc
gagttgaagcaggccaagcaggaattgaagaaagccaagtctgtgttgcagatggacgag
ctcaaatgcaggaagcgggtcttgaggagactgggatattgcactgctgcggatgttatt
gagctcaagggtcgcgttgcttgcgaattgaatggcgctgatgaattgctgctcacggag
atgatttttaatggactcttcaattcgctcaatgtccctcagatgactgcgctgctgagt
tgctttgtctgcgatgaaaagtccaatgaaatgcccaaaagcaccaacgagctcagcggc
ccgcttagacagatgcaggacttggctcgcaggattgctaaagtttctgcagaagctaat
ttagagattgatgaggacagctatgttgagagattcaagccttatttgatggatgtcgtt
tattcctggtgcaaaggcgcttctttctttcagatctgcaagatgactgatatttttgaa
ggttcgataattagatgtatgagacggttggaagaagtactgagacaacttattcaggct
gctaaaaatatcggaaactcggacctagaaaataaattcagcgaagctatcaagttattg
aaacgtgatatcgtttttgcagcctcgttgtatttgtaa
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integrated database retrieval system
