Cotesia typhae: 141533578
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Entry
141533578 CDS
T11099
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
ctyp
Cotesia typhae
Pathway
ctyp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ctyp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141533578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ctyp03041
]
141533578
Enzymes [BR:
ctyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141533578
Spliceosome [BR:
ctyp03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
141533578
Complex B
141533578
Complex C
U2 SnRNP specific factors
141533578
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
ERCC3_RAD25_C
MscL
SCAI
Motif
Other DBs
NCBI-GeneID:
141533578
NCBI-ProteinID:
XP_074108624
LinkDB
All DBs
Position
Unknown
AA seq
776 aa
AA seq
DB search
MSYQRGGGNKPRGFGFTSFQMGSKRSGVNIPPPASINTSSSLSKQGYHTMNSITENALSA
CWGMPKKRTKTEDEYFEDDDETPASTLEYIPAPGSPTYELMKQKSKKNDSDSEEDPLDAF
MAGIDAEVERNNKAALASTAEDSDKQDKSYKGVRQDIDEEDNEESYYRYMEENPTAGLQQ
EESDTEIEYDEDGNPLAPPRKKEIDPLPPIDHSEIEYEPFEKNFYNVHEDIACLTKSQVD
DLRKTLGIRVSGAAAPKPVASFGHFGFDDALIKAIRKNEYSQPTPIQAQAIPTALSGRDL
IGIAKTGSGKTAAFIWPMLVHIMDQRELKEGDGPIGLILAPTRELSQQIFHEAKKFGKIY
NIQVCCCYGGGSKWEQSQALAGGAEIVVATPGRMIDLVKMKATSLSRVTFLVLDEADRMF
DMGFEPQVRSICNHVRPDRQTLMFSATFKKRIEKLARDVLTDPVKIVHGDVGEANTDVTQ
HVIVFNNNPTGKWTWLLQNIVEFLSAGSLLIFVTKKLNAEELSNNLKLKEHEVMLLHGDM
DQVERNKVITAFKKKEVSILVATDVAARGLDIPHIRTVVNYDIARDIDTHTHRIGRTGRA
GEKGTAYTLVSEKDKEFAGHLVRNLEGADQEVPKSLMDLAMQSSWFRKSRFKGGKGKSLN
VGGAGLGFRGRPTSSNQSGGSGSSAPKDISEVVKKLERHGPCSDRLSAMKAAFKSQYNTQ
FRASSDHTWEQTIQPPSVVMPPPPPPPPGPGSRSEKLQNETPEKSDRKRVRKSRWE
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgagttatcaacgaggtggaggaaacaaaccacgaggtttcggattcacgagctttcaa
atgggctcaaagcgatctggagttaatatcccgccacccgcgtcaataaacacctcgtcg
tcattgagcaagcaaggttatcacacgatgaactctatcacggagaatgcactgtcagct
tgctggggcatgcccaaaaagaggaccaaaaccgaagatgagtactttgaagatgatgat
gagacaccagcgagtactctggagtacattccagctccaggttcacctacttatgagttg
atgaagcagaagtccaagaaaaatgacagtgacagtgaggaagatcctctggatgctttc
atggctgggattgatgctgaagttgaaaggaataataaagctgcgttggcttccacggca
gaagattccgataagcaagacaaatcttacaagggggttaggcaggatattgatgaggaa
gataatgaagaaagctactacaggtatatggaagaaaatccaacagcgggattgcagcaa
gaagagtctgacacagagattgagtatgacgaggatggaaatcctctagccccaccaaga
aaaaaggagattgatcctctaccgccaattgatcattcagaaatcgagtatgaacctttc
gaaaaaaatttctacaatgtccatgaggacattgcgtgcttaacaaagagccaagttgat
gatttaagaaagactctggggatcagagtatctggagcagctgcgccgaaaccggttgcc
agttttggacactttgggttcgatgatgcgctgataaaagctatcaggaagaatgagtac
tcccagccgactccaattcaagctcaggcgattccaaccgcgttgagtggtagagatttg
atcggtattgccaaaacgggtagtggtaaaaccgcggcttttatttggccgatgctggtg
cacattatggaccagcgagagcttaaagaaggagatggtcctattggattaattttagcg
cctacacgtgaattatcacaacagatcttccatgaagctaaaaaattcggcaagatttat
aacatccaagtgtgttgctgctatggaggaggaagtaagtgggaacaaagtcaagctctg
gctggtggagctgaaattgtagtcgctactccgggaagaatgattgatttggttaaaatg
aaggctactagtcttagccgggttacttttttggtactcgatgaagctgatagaatgttt
gatatgggttttgaaccacaagtaaggtcaatttgtaatcacgtaagaccagataggcag
acactgatgttcagtgcaaccttcaaaaaacgaattgaaaaattagcgcgtgacgttcta
acagacccggtgaaaatagtccacggtgatgtaggagaagctaacacagacgtaacccag
cacgtgatagttttcaataacaacccgactggcaagtggacctggctgctgcagaacatt
gtcgagtttctgagcgctgggagtctgttgatattcgtaactaaaaaactcaacgccgaa
gagctctctaataatttaaagttgaaggaacacgaagtgatgctgctgcatggagatatg
gaccaagttgagaggaataaagtgattactgcatttaagaagaaggaagtgagtattctg
gtggcgactgacgttgcagcacgtggtctggatattcctcacatcagaacagtggttaat
tatgacatcgcgagggatattgacactcacactcatcggattggaagaactgggcgtgct
ggggaaaagggtactgcttatacgctagtctctgaaaaggacaaagagtttgctggacat
ttggtcaggaatttagaaggtgctgatcaagaggttcccaagagtttgatggatcttgcg
atgcagagctcttggttccgtaagtccaggttcaaaggtggaaaaggaaagagtttgaat
gttggtggtgctggattaggatttagaggtagacctacttcatcgaatcagagtggagga
tcaggttcatcagcgccgaaggacataagtgaagttgttaaaaaattagaacgacatggt
ccttgtagcgatcgattatctgcaatgaaagccgcttttaaaagtcaatataatacacaa
tttcgagcgtcttcggatcacacgtgggaacaaacaattcagccaccttccgtggtgatg
ccaccaccaccacctcctccgccaggacctggttccagatctgaaaagctccaaaatgaa
acgcctgagaaaagcgatcgtaaacgtgtgaggaagagtcgatgggagtaa
DBGET
integrated database retrieval system
