Cotesia typhae: 141535655
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Entry
141535655 CDS
T11099
Symbol
Fand
Name
(RefSeq) pre-mRNA-splicing factor SYF1 fand
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ctyp Cotesia typhae
Pathway
ctyp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ctyp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141535655 (Fand)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctyp03019
]
141535655 (Fand)
03041 Spliceosome [BR:
ctyp03041
]
141535655 (Fand)
Messenger RNA biogenesis [BR:
ctyp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
141535655 (Fand)
Spliceosome [BR:
ctyp03041
]
Complex B
Other components
Prp19-related factors
141535655 (Fand)
Complex C
141535655 (Fand)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_15
TPR_8
TPR_12
TPR_10
PPR
DHR-2_Lobe_A
NRDE-2
Mad3_BUB1_I
Motif
Other DBs
NCBI-GeneID:
141535655
NCBI-ProteinID:
XP_074111805
LinkDB
All DBs
Position
Unknown
AA seq
852 aa
AA seq
DB search
MNTNQKISFDGNVYEFHDDDLPYEEEILRNQHSVRHWLRYLDHLKSTKSTNLSIVYERSL
KELPGSYKLWYGYLSHRVSQLKNRRLDDPLYEDVSNAFERALIFMHKMPRIWIDYCTLMT
EQCFITRTRHIFDRALRALPITQHHRIWPLYLDFVKSHDIPETGIRVFRRYLKLAPEDTE
DYIEYLISIGRLDESAIKLAHIVNQDDFISKHGKSNHQLWNELCDLISKNPDKIKSLKVD
PIIRGGLRRYTDQVGSLWNSLADYYIRSGLFERARDIYEEAIQTVSTVRDFTQVFDAYSQ
FEEIATKKRMEEVSKNPNRTEDDDVELDLRLERFEHLMERRPLLLNSVLLRQNPHNVPEW
HKRVKLYEGQPHEIINTFTEAVQTVKPQLAVGKLHTLWVAFAKFYEENGQLSDARVVFEQ
ATHVPYTKVDDLASVWCEWAEMELRHFTGNRPEEAMKLMHRATAMPSRKVGYYDETETVQ
MRLYKSLKVWSMYADLEETFGTVKTCKAVYDNIIDLKIATPQIIINYGMYLEDQKYFEEA
FRAYEKGIAMFKWPNVFDIWNTYLVKFLNRYKGSKLERTRDLFEQCLEYCPPKYAKVFYL
LYAKLEEEYGLARHAMNVYDRAIKAVPTEEKFELFNIYIKKVAEIYGMPKTREIYTQAIE
VLPEDKSREMSLRFAEMETKLGEVDRARTIYIHCSEICDPRVTSRFWQIWKEFEVRHGNE
ETMREMLRIKRSVQAMYNTQINMMTAQMLNSTTPTENTVDAMRLLDMKAADSGEAPQGNA
PAPPRGTISFVRGVTEGGKDDGKVKNPDEIELDLDSDEETEDIEEEEVPVEKQAIPSEVF
GGLKPVEEMEQD
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgaacactaatcaaaaaattagttttgatggaaatgtttacgaatttcatgatgatgac
cttccatacgaagaagaaattctccgcaatcaacactcggtgagacactggctgcggtac
ctggaccatctgaagtccaccaaaagcacaaacttaagcatcgtatatgagcgttcttta
aaagaactccctggtagttacaaactatggtacggatacttgagccaccgagtgagtcag
ttaaaaaatcgtcgacttgatgatccgttgtacgaagacgtaagcaacgcctttgaacgg
gcgttgattttcatgcataaaatgccacgtatttggatcgactactgcacattgatgacg
gagcagtgcttcatcacgagaactcgacacatatttgaccgggctctgcgagcccttccg
atcacccagcatcaccgtatctggcctttgtatttagatttcgtcaaaagccatgatatt
cccgagaccggcatcagagtcttcaggagatacctcaaactcgctccagaagacactgaa
gactatatcgagtatttaatttcaatcggccgtttagatgaatccgctatcaagcttgcc
catatcgtaaaccaagatgacttcatctccaagcacggtaagtcaaaccaccagctctgg
aacgagctttgcgacttgatttccaaaaatccggacaaaatcaaatcgctgaaggtcgac
ccgatcatcagaggcggtctcaggcggtacactgaccaagttgggtctctctggaactcc
ctagccgattactacatccgtagcggcttatttgaaagagccagagacatttacgaggaa
gcgattcaaactgtatcgactgtcagagacttcacccaggttttcgacgcttactcgcag
tttgaagaaatagcgacgaagaaacgcatggaagaagtcagcaaaaaccccaacaggact
gaagacgacgatgtggagctagatctacgtctcgagagattcgagcacctcatggagcga
agacctctgcttctcaactcagttctgctaagacagaaccctcacaacgttcctgaatgg
cacaagcgcgtgaaactctacgaagggcagcctcatgaaataataaacacttttacagaa
gcagtccagacagtgaagcctcaattagctgtaggaaaacttcacaccctctgggtggcc
ttcgctaaattctacgaagaaaacggacagttgtctgatgcgagagtggtctttgaacag
gccactcatgttccgtacactaaagttgatgatctagcttctgtgtggtgcgagtgggcg
gagatggagctccgtcacttcaccggcaatcgcccggaggaagctatgaaattgatgcat
cgcgccactgcgatgccgtccaggaaagttgggtactacgacgagacagagacggttcag
atgaggttgtacaagtccttgaaggtttggtcgatgtacgctgacctggaagagactttt
gggactgtaaaaacttgcaaggctgtctatgacaatataattgacttgaaaatagcaacg
cctcagattatcatcaactatggaatgtatttggaggatcagaagtactttgaagaggct
ttcagagcttatgagaaaggaattgcgatgttcaagtggccgaatgtcttcgatatctgg
aacacttatttggttaaatttttaaacaggtacaaggggtccaaattggagcggacacgt
gatttgttcgagcaatgtttagaatattgtccaccaaaatatgcaaaagtgttttattta
ttgtacgcaaagctcgaagaagaatatggacttgccagacatgcgatgaatgtttatgat
cgtgctattaaagctgtgcctactgaagagaagtttgagttattcaatatttatattaag
aaagtcgctgagatttacggcatgccgaagaccagagaaatttacacccaagctattgag
gtccttcctgaagacaagtcccgagaaatgtcgttaaggttcgcggagatggaaaccaag
cttggtgaagtcgaccgagcaaggactatttacatccattgcagcgaaatttgcgaccct
cgagttacttcgagattctggcagatttggaaggaattcgaagtccgtcatgggaacgag
gaaacgatgcgtgagatgttgaggattaagaggagtgtgcaggctatgtataacactcaa
attaacatgatgacggcgcaaatgctaaacagtaccactcctacggaaaatactgttgac
gcgatgagattgctggacatgaaggctgctgattctggagaagctccacaaggaaatgca
ccagctcctccaagaggcacgatcagcttcgtcagaggtgtcactgagggaggaaaagat
gatggaaaagtgaaaaatccggatgagattgaattggatcttgacagtgatgaggagaca
gaagacattgaagaggaagaagttccggtggaaaaacaggcgattccttcggaagttttc
ggagggttgaagcctgttgaagaaatggaacaagattaa
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