Corynebacterium urealyticum DSM 7111: CU7111_0562
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Entry
CU7111_0562 CDS
T02457
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cua
Corynebacterium urealyticum DSM 7111
Pathway
cua03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CU7111_0562 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cua03400
]
CU7111_0562 (mfd)
Enzymes [BR:
cua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CU7111_0562 (mfd)
DNA repair and recombination proteins [BR:
cua03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CU7111_0562 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
Arg_repressor_C
UB2H
RecG_dom3_C
DUF7692
Motif
Other DBs
NCBI-ProteinID:
AGE36156
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All DBs
Position
676089..679838
Genome browser
AA seq
1249 aa
AA seq
DB search
MSTTVRPSASLNTSAPGNKGHAAPALSGVLRAAARDSKLKGLVTHVGAAQLAIQGPDAVW
PFAVGTIAQHAPVLVITATARQAEDLTEQLKAMLGDEVELMPAWETLPHERISPNVETVS
QRMKVLRRLHRQTAGELGESDTHIRVVVAPVRTLVQPIQDSLGAVTPVHFAVDQEVDFEQ
IQHELVERGYSAVDVVAKRGHFAVRGGILDVFPATGELPVRVEFWGDEVSDIRPFSVGDQ
RTIPGVELDEVTVYPARELLITDSVATRAGQLAKEHASHAELADVYHKISEKIAVPGMEA
LIPSLHDGELKLLPEFLPEGTHTIVLAPAAVERRAADLKETGEQFLEAGWEAAAMGANAP
ADGVAYVSVAAARHAQTALDRPWWTLSPLGMLDSDEGFDGDALLLDYDAAPQPRGEMEAI
EHMMADIRTRVEAGGRVAFAAPTPTVAARMLRRFHEAGIAAEAVGVDLRGQRGIGRQAAS
KATPGQEPAPKKVSIYHAVAHEGLVFPMAGGEHPSLLFLTETDVTGNRVEAAATGKRKPA
KRRNRVDPLALEPGDLVVHDSHGIGKFVKMTERTVGKGADASRREYLVLEYAPSKRGGPG
DQLYVPMDQLDLLSRYVGGEKPALSKMGGADWKNTKRKARKAVREIAGELVQLYAQRQAA
PGYAFAPDSPWQREMEEAFPFTETEDQFNAIEAVKSDMEKPVPMDRVIVGDVGYGKTEVA
VRAAFKAVQSGKQVAVLVPTTLLAQQHMKTFRDRMQDFPTRIAELSRFTTPAQSKEILKG
LAEGTIDIVVGTHRLLQTGVTWKNLGLIIVDEEQRFGVEHKEHIKSLHTHVDVLTMSATP
IPRTLEMSMAGIREMSTILTPPQDRHPVLTYVGAQEDKHVAAAIRRELLRDGQVFYIHNR
VKSIEKAAEHIRSLVPEARVVVAHGQMSEEQLETTVEGFWNREFDILVCTTIVETGLDIS
NANTLIVENAHHMGLSQLHQLRGRVGRSRERAYAYFLYPKGEVLTETSYDRLSTIAQNNE
LGAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVRLVGEAVEAFRAMADGKPVDGR
EEEKKEIRIDLPVDAHIPVTYVASERLRLEAYRKLAEAQDEDQIEEVLTEFRDRYGEPPA
QVTNLAVLSRLRLVCRDLGVSEVVATGSRISFSPIDLQDSGQVRLKRLFPGATYRATTKV
VVIPAPKEGAGMRAVALRDVPLAQWCANALTQLAGIPERDISGGSAPTR
NT seq
3750 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccacggtccgcccatcggcaagcctaaatacgtccgcaccagggaataagggg
cacgcggctcccgcgctgtcgggtgtgctgcgggccgccgcgcgcgactcgaagctcaag
ggcctggtcacccatgtcggtgccgcgcagttggcgatccagggccccgacgcggtgtgg
cccttcgccgtcggcaccattgcccagcacgctccggtgttggtgatcacggcgaccgcc
cggcaggccgaggatctcaccgagcagctcaaggccatgctgggcgacgaggtggagctc
atgcccgcctgggagaccctgccgcacgagcggatctccccgaacgtggagaccgtctcc
cagcggatgaaggtgctccgccgcctacaccggcagaccgccggcgagctgggggagtcc
gatacccatattcgggtggttgtcgcgccagtgcgcacgttggtgcagcccatccaggac
agcctcggtgccgtaactcccgtccacttcgccgtcgatcaggaggtggatttcgaacag
atccagcacgagctggtggagcgcggttactccgcggtggacgtggtcgccaagcgcggg
cacttcgcggtgcgcggtggcattctcgacgtcttcccggccacgggagagctgcccgtg
cgcgtggaattctggggtgacgaggtctctgacatccgccccttcagcgtcggcgatcag
cgcaccatccccggggtggagctcgacgaggtcaccgtctacccagcccgcgagctgctc
atcaccgactccgtggccacccgcgccgggcagctggctaaagaacacgccagccatgct
gagctggcggatgtgtaccacaagatcagcgagaagatcgccgtgcccggcatggaggca
ctgatcccgagcctccacgacggtgagctgaagctcctgccggaattcctgccggagggc
acgcacaccatcgtgcttgccccggccgctgtcgagcgccgcgccgcagacctgaaggag
accggcgagcaattcctcgaggccggctgggaggctgcggccatgggggcgaacgctccc
gctgacggcgtggcctacgtgtccgtcgccgctgcccgacatgcccagacggcattggac
cggccgtggtggacactgtccccgctcggcatgctggactccgacgagggcttcgacggc
gacgccctccttctcgactacgatgccgcgccccagccccgcggcgagatggaggccatc
gagcacatgatggccgatatccgcacccgcgtggaggccggcggtcgggttgccttcgcc
gccccaacacccaccgtcgctgcccgcatgctgcgccgcttccacgaggcaggcatcgcc
gcagaggccgtgggggtggacctgcgcggccagcgcggcatcggccgtcaggccgcatcc
aaggcgaccccgggccaggagccggcgccgaagaaggtcagcatctaccacgcggtcgcc
cacgagggcctcgtcttcccgatggcggggggagagcaccccagcctgctgttcctgacc
gaaacggacgtcaccggcaaccgcgtggaggcggcggcgaccggtaagcgcaagccagcc
aagcgccgcaaccgcgtggatccgctggccctggagcccggcgacctggtggtccacgat
tctcacggcatcggcaagtttgtgaagatgaccgagcgcaccgtcggcaagggtgcggac
gcctcccgtcgcgaatacctcgtcctcgaatacgcacccagcaagcggggtggaccaggc
gaccagctttacgtccccatggaccagctcgacctgctgtcccgctacgtcggtggggag
aagccggccctatccaagatgggtggtgcggactggaagaacaccaagcgcaaggcccgc
aaggccgtccgggaaatcgccggggagctcgtgcagctctacgcccagcgccaagccgcg
ccgggctacgccttcgctccggatagcccgtggcagcgggagatggaggaggctttcccc
ttcaccgagaccgaggaccagttcaacgccatcgaggccgtgaagtccgacatggaaaag
ccggtgccgatggaccgcgtcatcgtgggtgatgtgggctacggcaagacggaggtcgcg
gtgcgcgccgccttcaaggccgtccaatccggcaagcaggtcgccgttctcgtcccaacg
acgctgctcgcgcaacagcacatgaagaccttccgggaccggatgcaggacttcccgacg
cgcatcgcggagctgagccgtttcactacccctgcgcagtccaaggagatcctcaagggg
ctggccgagggcaccatcgacatcgtcgtgggcacccaccgcctgctgcagaccggcgtg
acctggaaaaacctggggctcatcatcgtcgacgaggagcagcgctttggcgtggagcac
aaggagcacatcaagtccttgcacacccacgtggacgtcctgaccatgtccgctactccg
atcccgcgcacgctggagatgtccatggccggcatccgcgaaatgtcgaccatccttacc
ccgccgcaggaccgtcatccggtgctgacctacgtcggtgcccaggaggacaagcacgtc
gctgccgcgatccgccgcgagctgctgcgtgacggtcaggtgttctacatccacaaccgg
gtgaaatccatcgagaaggcggcggagcacatccgcagccttgtgcccgaagcccgggtc
gtggtcgcccacgggcagatgagcgaggaacagctggaaaccaccgtggagggcttctgg
aaccgggagttcgacatcctggtgtgcaccaccatcgtggagaccggcttggacatctcg
aatgccaacaccctgatcgtggagaacgcccaccacatgggcctatcccagttgcaccag
ctgcgcgggcgcgtgggtcggtcccgggagcgggcctatgcctacttcctctatccgaag
ggcgaggttctcaccgagacctcctacgaccgactgtccaccatcgcgcagaacaacgag
ctcggcgcgggtatggccgtcgcgatgaaggacctcgagatgcgtggcgccggcaacgtg
ttgggcgccgagcagtcggggcacattgcgggggtgggcttcgacctctacgtccggctt
gtcggtgaggcagtggaggccttccgtgcgatggcggacggcaagccggtggacgggcgc
gaggaggagaagaaggagattcgtattgacctgccggtggatgctcacatcccggtgacc
tacgtggcctccgagcgactccgactggaggcctaccgcaagcttgccgaagcgcaggat
gaggaccagattgaggaggtgctcaccgagttccgggaccgctacggcgagccgccggcc
caggtgactaacctcgcggtgctgtcccgactgcggttggtttgccgtgacctgggggtc
tcggaggtcgtggcgacgggctctcgcatcagcttcagccccatcgatttgcaggactcc
ggccaggtgcgattgaagcgtctattcccgggggcgacgtaccgggcgaccactaaggtc
gtggttattccggcgccgaaggagggtgcggggatgcgggcggtcgcgctgcgggatgtg
ccgttggcccagtggtgtgcgaatgctctcacccagctggctggcatcccggaacgggac
atcagcggaggtagcgccccgacgcgttag
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