Cuculus canorus (common cuckoo): 104054278
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Entry
104054278 CDS
T08597
Symbol
PCDH11X
Name
(RefSeq) protocadherin-11 X-linked isoform X1
KO
K16498
protocadherin delta 1
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
104054278 (PCDH11X)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cuca01009
]
104054278 (PCDH11X)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cuca04515
]
104054278 (PCDH11X)
Protein phosphatases and associated proteins [BR:
cuca01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
104054278 (PCDH11X)
Cell adhesion molecules [BR:
cuca04515
]
Cadherins
Protocadherins
104054278 (PCDH11X)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
K319L-like_PKD
Fibulin_C
Cadherin_4
TMEM154
Ion_trans_2
Motif
Other DBs
NCBI-GeneID:
104054278
NCBI-ProteinID:
XP_053931363
LinkDB
All DBs
Position
10:4463154..4933842
Genome browser
AA seq
1245 aa
AA seq
DB search
MDLLSGTYLLAVLLACIVFQSGAQEKNYTVREELPENVLIGNLLKDLNLTLDPDVPLSSP
LQFKLVYKTGDVPLVRVEENTGEIFTTANRIDREKLCSGIFSENRCFYEVEVAVLPDEVF
RLVKIRFLIEDINDNAPLFPSTVINISIPENTAINSRYSVPSAIDPDIGVNGIQHYELLK
PKTAPKRTFGSITNDQGQNVFGLDIIETPEGDKWPQLIVQQILDREQKDTYVMKIKVEDG
GNPPRSSTAILQVTVTDVNDNRPVFKENDIEVSVPENAPVGTSVSQLHATDADLGSNAQI
HFYFSNQISGLAKRLFAIDNATGLITIREPLDREESPVHKLTVLASDGSSTPSRATVTVN
VTDINDNVPSIDTRYIINPVNGTVLLSEKAPLNTKIALITVMDKDADLNGKVTCFTDHDV
PFRLKPVFDNQFLLETATFLDYEATREYAIKIVASDSGKPPLNQSAMLLIKIKDENDNAP
VFTQPIIGLSIPENNAPGTQLTKISATDADSGRNAEISYILGSDAPPIFNLDRRTGILTA
VRKLDREKQDRYSFTVLAKDNGMPPLQTNATVTVSVLDQNDNSPAFTHNEYNFYVPENLP
MYGTVGLITVTDADSGENAAVTLSILNGRDNFIIDPLTGVIRPNITFDREQQGSYTFQVK
AVDGGRVQRSSTAKVTINVVDVNDNRPVFVIPSSNYSYELVPTSTSPGAVVTKVFAVDND
TGMNAELRYSIIGGNSRGLFTIDQLTGNITLKEKVITSDHGLHRLVIKVNDLGQPESLYT
IALVHLFVNETVTNSSYIQELVRRNMETPVGQNIGDGDITPQTNDYVKIIIAIIAGTMTV
ILVIFVTALVRCRQTPRHKVVQKNKQSGEWVSPNQENRQIKKKKKKKKRSPKSLLLNFVT
IEESKPDDPGHEHINGTLDIPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPT
FQIKPETPVPPKKHHVIQELPLDNTFVVGCDSLSKCSSSSSDPYSVSECSCQGGFKTPGP
IHTRQHTKEMGRPQTPLKETTLEPWTQPQPQRRVTFHLPDGSQESCSDSGLGDHEPTSGA
STSHPLPLGFPQEEYYEQASPNSRTEGDGNSDPESTIEVNLQKALAEASETCTQECLILG
HSDNCWMPPSLTQYQQSNTPLPSFGFQQGWGRGARAEGRHTLGRPLPKDDTDKGQGGPRP
QFYNTCERLCASEDPVKVIPLANFAASHPPSVSGSSTTFIHEHQL
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atggacttgctgtctggaacctacctcttggcagtcttattagcctgtattgtatttcaa
tctggcgcacaggagaagaattataccgtgcgggaagaactgcctgaaaatgtcctcatt
ggcaatttgctcaaggatcttaacctaacactggacccagatgtgcccctttcctcaccg
ctacagttcaagcttgtgtataagactggggatgtaccattagtacgggtggaggagaac
actggtgagatattcacaactgcaaaccgcatagaccgagagaagctctgctctggcatc
ttcagcgagaatcgctgcttttatgaggtggaggttgctgttttgcctgatgaagttttc
agactagtcaagatcagattcctaatagaggatataaatgataatgcccccctcttcccc
tcaacagttattaacatctctattcctgaaaacacagcaattaattctcgctattctgtc
ccatctgccattgatccagacattggtgtgaatggtattcaacactatgaactccttaag
cccaaaacagctccgaaaaggacgtttggatccattacaaatgatcagggtcaaaatgtc
tttggtcttgatataattgagacacctgagggagataagtggcctcaactgattgtccaa
cagattctggatagggagcagaaggatacgtatgtgatgaaaattaaagttgaagatggt
ggaaaccctccacgatctagcactgccatcctgcaagtcacagtgactgatgtgaatgat
aatcggccagtcttcaaagagaatgacattgaagttagtgttccagaaaatgctccagtg
ggcacctccgtttctcagctccatgccactgatgcggacctgggctcaaatgcacaaatc
cacttctatttcagcaatcagatctccggtttggctaaacggctgtttgccattgataac
gccactggcctcatcactatcagagaaccactagaccgggaggaatctcctgttcacaaa
ttaactgttttggcaagcgatggcagttcaactccatcgagagcaacagtgactgtgaat
gtcacagacattaatgacaacgtcccatcgatagacacgagatacatcatcaatccggtg
aacgggacagtgcttttgtctgagaaggctccccttaatacaaaaattgcgttgataaca
gtaatggacaaggatgctgatctcaatgggaaagttacttgttttacagatcatgatgtc
ccttttaggctaaagccagtgtttgataatcagtttcttctggagacagccacgtttcta
gattatgaagccacacgggagtatgccattaaaatagtggcttcggattcggggaaacct
cccttaaaccagtctgcgatgctcctgatcaaaattaaagatgaaaatgacaatgcccca
gttttcacacagcctatcataggtctttccatccctgaaaacaatgctcctggtactcag
ctaaccaagataagcgctacggatgctgacagtgggcgcaatgctgagatcagctatatc
ctgggttctgatgcaccccctattttcaaccttgaccgccgtacaggcattctgacagca
gtgagaaagctagacagagaaaagcaagacaggtactccttcactgtgctggccaaggat
aatgggatgccacccttgcagaccaatgctactgtgacggtgtctgtcctggaccagaat
gataacagccctgctttcacacataacgaatacaatttctatgtgccagaaaacttaccc
atgtatggcacagttgggcttatcacggttacagatgctgattcaggagagaatgctgct
gtcactctctctatattaaatggtagagataattttattatagatccacttactggtgtg
ataagaccgaatatcacctttgatagggaacaacaggggtcatatactttccaggtgaag
gctgtggatggaggaagagtgcagcgttcctcaactgccaaagtgaccatcaatgttgtt
gatgtaaatgacaacaggccggtttttgttattccttcatctaattattcgtatgagttg
gttccaacatcaaccagtccaggggctgtagttactaaagtctttgcagttgataatgac
acagggatgaatgcagaactccgctatagcatcataggtgggaactcgaggggcttattt
acaattgaccaattaacaggcaatattactttgaaagagaaggtaattacttcagatcat
ggcttgcacagactggtgataaaagtcaatgacctaggacagccggagtctctttatact
atagctcttgtgcatttgtttgtgaatgagacagtcaccaacagttcctacatacaagag
ctggtgcgcaggaatatggaaactccagttggccagaatattggggatggtgacataacc
ccacaaaccaatgattatgtcaagatcatcattgccattattgcaggcaccatgacagtt
attctggtaatttttgttactgctttagtacggtgccgccagacgcccaggcacaaggtt
gtccaaaagaacaagcagagtggtgaatgggtttccccaaatcaagaaaataggcagatc
aagaaaaagaagaagaagaagaagcgctcgccaaaaagtctcctcctcaattttgtgact
attgaagaatctaagcctgatgatcctggccatgagcacataaatggcactttagacatt
cctgtagagctagaagaacagactatgggaaaatacaactgggccaccacaccaaccaca
tttaagcctgacagcccagatttagcaaagcactacaagtctgcttctccgcagcctacc
tttcaaattaaacctgagactcctgtaccccccaagaagcaccatgtcattcaggaactg
cctctagataatacctttgtggtgggctgtgactcactctccaagtgctcatcaagcagc
tcggacccttacagtgtttctgaatgcagctgtcaaggaggcttcaagaccccaggcccc
atacacaccagacagcacacaaaagaaatgggaaggccgcaaactcctttgaaagaaacg
actttggagccttggactcagccacagcctcagcgccgtgtcacgtttcacctaccagat
ggctcccaggaaagctgcagtgacagtgggctcggagaccatgaacccacgagtggtgct
agcacatcgcaccctctgcccctcggcttccctcaggaggagtactatgagcaagcttca
cccaacagccggacagaaggagacggcaactcagacccggagtccactattgaagtaaat
ctccagaaagccctggctgaagcctccgaaacctgcacgcaggagtgtctcatcctgggc
cattctgacaactgctggatgccaccgtctttgacgcagtatcagcagtccaacacccct
ttgccatcgtttggcttccagcaaggctggggccgaggagccagggctgagggacgacac
actcttgggaggccccttccaaaggacgacactgacaaaggccagggtggtcccaggccc
cagttctacaacacctgcgaaagactttgtgccagcgaagatcccgtcaaagtcattcct
ctggcaaacttcgccgcgtcccacccgccgtcggtgtctgggagtagcactacgtttata
catgagcaccagctataa
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