Cuculus canorus (common cuckoo): 104054358
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Entry
104054358 CDS
T08597
Symbol
TRPM1
Name
(RefSeq) transient receptor potential cation channel subfamily M member 1 isoform X1
KO
K04976
transient receptor potential cation channel subfamily M member 1
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cuca04040
]
104054358 (TRPM1)
Ion channels [BR:
cuca04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
104054358 (TRPM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSDAT_euk
TRPM_tetra
Ion_trans
LSDAT_prok
Glutaredoxin2_C
Motif
Other DBs
NCBI-GeneID:
104054358
NCBI-ProteinID:
XP_053933191
LinkDB
All DBs
Position
12:20790999..20884789
Genome browser
AA seq
1688 aa
AA seq
DB search
MEGKGQGTKKGRGGKLTGSLRRMSGSFKRTSFKGSASGSQKGQKAWIEKTFSKRECIYVI
ANNKDTTRCCCGQLINQHIPPPPSITANKNGEETKQVEAQPEKWSVSKHTQTYPTDAYGN
LEFQGGGHSNKAMYIRVSYDTKPDSLLHLMVKDWQLELPKLLISVHGGLQNFEMQPKLKQ
VFGKGLIKAAMTTGAWIFTGGVSTGVIRHVGDALKDHSSKSRGRICAIGIAPWGIVENKE
DLIGKDVTRVYQTMSNPLSKLSVLNSSHTHFILADNGTLGKYGAEVKLRRQLEKHISLQK
INTRLGQGVPVVGLIVEGGPNVISIVLECLREEPPLPVVICDGSGRASDILSFAHKYSEE
GGIISESLRDQLLVTIQKTFNYNRNQAHQLFVILMECMKKKELITVFRMGSEGQQDIEMS
ILTALLKGTNASAPDQLSLALAWNRVDIARSQIFVFGHHWPPLGSLTAPDGTALEKEKKS
PAPQTKAARGKGKGKKKGGKGKDEPEEEMDPRKLELLNWVNSLEQAMLDALVLDRVDFVK
LLIENGVNMHNFLTIPRLEELYNTRLGPPNTLHLLVRDVKKRQSRGFSWVNMEGNLPPDY
HISLIDIGLVLEYLMGGAYRCNYTRKSFRTLYNNLFGPKRPKALKLLGMEDDEPPTKGKK
KKKKKEEEIDIDVDDPEVSRFQYPFHELMVWAVLMKRQKMALFLWQRGEEAMAKALVACK
LYKSMAHESSESELVDDISQDLDNNSKDFGQLAVELLDQSYKHDEQVAMKLLTYELKNWS
NSTCLKLAVAAKHRDFIAHTCSQMLLTDMWMGRLRMRKNPGLKVITGILFPPTILFLEFR
SYDDYSYQTSKENEEGKEKEEENADANADTGSRKGDEENGNKKQKSLPIGTKIYEFYNAP
IVKFWFYTISYLGYLMLFNYIILVRMERWPSVQEWIVISYIVTLALEKVREILMSEPGKL
SQKVKVWLQEYWNITDLVAISVFIIGAILRLQNQPYMGYGRVIYCVDIIFWYIRVLDIFG
VNKYLGPYVMMIGKMMIDMLYFVVIMLVVLMSFGVARQAILHPDEEPSWRLARNIFYMPY
WMIYGEVFADQIDRKSRIHIYAMEINPPCGDNLYDDDGKRLPPCIPGAWLTPAIMACYLL
VANILLVNLLIAVFNNTFFEVKSISNQVWKFQRYQLIMTFHDRPVLPPPMIIFSHIYIII
KRICCRCRKGEGDQDERDRGLKLFLNDEELKKLYDFEEQCVEEYFQEKEDEQQSSNDERI
RVTSERVENMSMRLEEVNEREHFMKASLQTVDLRLSQLEELSGRMVNALEKLAGIDKSEL
TYPRSRASSECDAAYLLRQSSINSSDGYSMYRYHVGGDELMYDDGTAPMSPAMGLRKKIH
SNGTKEEGADPRMLGPDHQASLQYSSNANAVATADYSKSALEIAQNASRPRSGSDGLGDE
KQGIFKSDGMLPQSINQMDAVMNNQSVPRSDFQNTQLKVERTKLEATISYPLDKSKAMRY
FPPETFRACQTTMMKSRSFIFAQGGKLVGGVNNWTTEYSTIMDQVCPSTIEQWATEWKYE
VQQQLSQERPPEYPGYVSEAERQAEQKQMDTDDSDVGEAGMSASYTSMPAAVKADKENSL
SVKPERTSRFLSVRSKSLHSHSRRAKSVKDKLNRPGHASSVTNLVVAFGSATEEQKARQE
NASTETEC
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atggagggtaagggccaggggactaaaaaaggaagaggaggaaagctcacaggttcctta
cggaggatgagtggctccttcaaacgcacttcatttaagggctcagcatctggatcacag
aagggtcaaaaggcttggatagagaagactttttcaaaaagagaatgcatctatgtaatt
gccaacaacaaagacactaccaggtgctgctgtggccagctcatcaaccaacatatccca
cctcctccgagtataacagctaataaaaatggagaagaaacaaagcaagtggaagctcag
ccagagaaatggtctgtcagtaaacacacccaaacatacccaactgatgcctacggaaac
cttgaattccagggaggaggacattctaataaggccatgtatatccgtgtgtcgtatgac
actaaaccagattctctgctgcatctcatggtgaaagactggcagctggaactgcccaaa
ctcttaatctctgtccatggaggcctccagaactttgaaatgcaacctaaattaaagcaa
gtatttggaaaaggtctgataaaggctgccatgaccacaggagcttggattttcactgga
ggtgttagtacaggtgtcattcgccacgtgggagatgccttgaaagatcattcttccaaa
tccagaggacgaatatgtgccataggaattgcaccatggggcattgtagaaaacaaggaa
gatctgataggaaaagacgtaacacgggtttaccaaacaatgtcaaaccctctaagtaag
ctctctgtgctcaacagttcccatacccacttcattctggcagacaacggtaccctaggt
aaatatggagctgaagtaaagttacgacgtcagttggaaaaacacatttccctccagaaa
attaacacacggctgggacaaggtgttcctgtagttgggctcatagtggaagggggtccc
aacgtgatctccattgtcttagagtgtctacgagaagaaccccctctccctgtcgtgata
tgtgatggtagtggacgagcatcggatattctgtcatttgcacacaagtattcggaagaa
ggagggataataagcgaatcccttagggaccagcttttagttaccatccagaaaaccttt
aactacaacaggaatcaagctcatcagctgtttgtcattcttatggagtgcatgaagaaa
aaagaacttattaccgtgttccgcatggggtctgaagggcaacaagacatcgagatgtca
atcttaactgctctcctcaaaggtaccaatgcgtctgctccagaccagctcagcttggct
ctggcctggaatcgcgtagacattgcacgcagccaaatctttgtctttggacatcactgg
ccacctttaggaagccttacagctcctgatggcacagctcttgagaaggaaaaaaaatct
ccagctcctcagaccaaagcagccagagggaaagggaaagggaagaaaaagggaggaaaa
ggaaaagacgagccagaagaagaaatggatccaagaaagcttgaactcctgaactgggtg
aattccctggagcaggccatgctggatgcgctggttctggatcgagtggactttgtgaaa
ttgcttattgagaatggagtgaacatgcacaacttcctcactattcctcgactggaagaa
ctttataatactagattgggtccaccaaatacactgcatttgctcgtcagagatgtgaaa
aagcggcagtctcggggattcagttgggttaacatggagggaaatcttccaccagattat
catatcagcctcatcgatattggtcttgtgcttgaatatctcatgggtggagcttatcgc
tgcaactatactcgaaaaagttttcggacgctttataataatttatttggaccaaaaagg
ccaaaagcccttaaactactagggatggaggatgatgagcctcccacaaaagggaagaag
aagaagaagaaaaaggaggaagagatcgatattgatgtggatgaccccgaagtcagccgc
tttcagtatccctttcatgaactgatggtatgggccgtgctgatgaaacggcagaagatg
gcactcttcctttggcagcgaggggaggaagccatggccaaggcacttgtggcctgtaaa
ctgtacaagtctatggcccatgagtcttcagagagtgagctggttgatgacatctcccag
gacctggacaacaactccaaagattttggccagctggctgttgaactcttggatcagtcc
tataaacacgatgagcaggttgccatgaaactactgacctatgagctgaaaaactggagt
aattctacctgcctgaaactggctgtggccgctaaacacagggacttcattgctcacacg
tgcagccagatgctcttaacagacatgtggatggggcggctgcgcatgcggaaaaaccca
ggccttaaggttataacagggattctcttccctcccaccatccttttcctagagtttcga
agttacgatgattattcttatcaaacatcaaaagaaaatgaagaaggcaaagaaaaggag
gaggaaaacgcggatgcaaatgcagatacaggctcccgaaaaggagatgaagagaatgga
aataaaaaacaaaagagccttccaattggaacaaagatttacgaattctataatgcacct
attgtcaaattttggttctacacaatatcatacctcggttacttgatgctttttaattat
atcatcttggtgcggatggaacggtggccgtcagtccaggaatggattgtcatttcctac
attgtgacattggctttagagaaagtaagagagattctaatgtcagagcctggcaagctg
agccaaaaagtgaaagtttggctccaggaatactggaatattactgacctggtggctatt
tcagtatttataataggagcaattcttcgcctacagaaccagccttacatgggttatgga
agagtgatttactgcgtagatatcattttctggtacattagagtactagatatctttggt
gtgaacaaatacctgggaccttacgtcatgatgattggaaagatgatgattgacatgctc
tactttgtggtcatcatgcttgtggttctgatgagctttggagtagcccgccaagctatc
ctgcacccagatgaggagccttcttggagactagctcgcaacatcttctatatgccctac
tggatgatctatggagaggtgttcgcagaccagatagaccgtaagagtagaattcatatc
tatgccatggaaattaatcctccttgtggggacaatctttatgatgatgatggtaaacgc
ctccctccgtgtataccaggggcctggctcactcctgctattatggcctgttacctcctg
gtagcaaatatcctgttggtgaacctgctgattgctgtcttcaacaataccttctttgag
gtaaaatcaatatccaaccaagtctggaagttccagcggtaccagctgatcatgacattc
catgacagacctgtcctcccgccaccaatgattatcttcagccacatctacataatcata
aagcgaatctgctgtcgctgcaggaagggtgaaggagaccaggatgagcgtgacagggga
ctaaagttatttctgaatgatgaagagctaaaaaaactctatgactttgaagagcagtgt
gtagaagaatacttccaggaaaaagaggatgagcagcaatcatctaatgatgaacgcatc
cgagttacctctgaaagagttgaaaatatgtctatgaggctagaagaagtgaatgaaaga
gaacattttatgaaagcttctcttcaaactgttgacctccgactctctcagttggaagaa
ctatctggtcggatggtgaatgctctcgagaagctggcaggtattgacaaatctgagctg
acatacccacgttcacgggcttcgtccgagtgtgacgctgcgtatctcctaaggcaaagc
agtattaacagctctgatggctacagcatgtacagataccacgttggtggggatgagcta
atgtatgatgacggcaccgctcctatgtccccagccatgggattgcgtaaaaaaatccac
tctaacggtacaaaagaagaaggagcagacccaaggatgctgggtccagatcaccaggcc
agtctccaatattcctctaatgctaatgcagttgccacggcagattacagtaaatctgcg
ttagaaattgcacagaatgcttccagaccacgttctggttcagatggtttaggggatgaa
aagcaggggattttcaagagtgatggaatgcttcctcaaagtataaaccagatggatgct
gttatgaacaaccagtcagtaccaagatcagattttcagaacactcagttaaaagtagaa
cgtaccaagttagaagcaaccatctcttatcccttggataagtctaaagcgatgcgctat
tttcctcctgaaacattcagggcctgtcaaaccactatgatgaagtcaaggagctttata
tttgcacagggtgggaagctggttggaggggttaacaactggaccacagagtatagcacc
atcatggatcaggtgtgtccttctacgattgaacaatgggccacagagtggaaatacgaa
gttcagcagcagctttctcaagagcgtcctccagaataccctggctatgtctctgaagca
gaaaggcaagcagagcagaaacagatggacacagatgacagtgatgttggtgaagcaggt
atgagtgcctcttacacctctatgcctgccgctgtcaaggctgacaaagagaattcgcta
tcagtaaagccagaaaggacttctcggttcctgtcagtacggtcaaagagtttacacagc
cattctcggagagccaagtctgtaaaggacaaattaaacagaccggggcatgccagcagc
gtaactaatttggtggtagcatttggcagtgcaacagaagaacagaaagctaggcaagaa
aatgcatccacagaaactgaatgttaa
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integrated database retrieval system
