Cuculus canorus (common cuckoo): 104054396
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Entry
104054396 CDS
T08597
Symbol
SMARCD2
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
104054396 (SMARCD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cuca03021
]
104054396 (SMARCD2)
03036 Chromosome and associated proteins [BR:
cuca03036
]
104054396 (SMARCD2)
Transcription machinery [BR:
cuca03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
104054396 (SMARCD2)
Chromosome and associated proteins [BR:
cuca03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
104054396 (SMARCD2)
PBAF complex
104054396 (SMARCD2)
GBAF(ncBAF) complex
104054396 (SMARCD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
104054396
NCBI-ProteinID:
XP_053944705
LinkDB
All DBs
Position
25:complement(3278817..3296907)
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AA seq
506 aa
AA seq
DB search
MAGRGAFPLSPLPPAAAAAPPPPPGPGPGPAIMRGPSAAPAATAAAPGYRPMGPAAQYQR
PGMPPGSRMPMAGLQVGPPGAPPYGAASPMRPGLPQAMMDPFRKRLLTPQAQPPLATPRR
GVKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRK
LRIYISNTFTPAKEEGEGGERVASWELRVEGKLLEDPSKQKRKFSSFFKSLVIELDKELY
GPDNHLVEWHRLPTTQETDGFQVKRPGDVNVKCTLLLMLDHQPPQYKLDPRLARLLGVHT
QTRASIMQALWLYIKHNKLQDSHEKEYINCNRYFRQIFNCVRMRFSEIPMKLAGLLQHPD
PIIINHTISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDAKIHETIE
SINQLKTQRDFMLSFSNNPQDFIQEWIKSQRRDLKIITDVIGNPEEERRAEFYQQPWAQE
AVGRHIFAKVQQRRQELEQVLGIRLT
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggccggccgcggcgccttcccgctcagcccgctgccgcccgccgccgccgccgcccct
ccgccgccgccggggcccgggcccgggcccgccatcatgcgcggacccagcgctgctccc
gccgccaccgctgctgctccgggctaccggcccatgggcccggccgcgcagtaccagcgc
cctgggatgccacccggcagccggatgcccatggcagggcttcaggtgggaccaccagga
gcacccccatacggagcagcctccccgatgagacccggcctgccacaagcaatgatggat
cccttcaggaagcgcctgctgaccccccaggcacagccgccgctggccaccccaaggaga
ggggtaaaaaggaggaagatggctgacaaggtcctgccacaaaggatccgggagctggtc
ccagaatcccaggcctatatggacctccttgcctttgagcgcaagctggaccaaaccatc
gctcggaagaggatggagattcaggaggccattaagaaaccactgacgcaaaagcggaag
ctgaggatttacatctccaacactttcaccccagccaaggaagaaggggagggtggagag
cgcgtggcctcctgggagctacgtgtggagggcaaactgctggaggacccaagcaagcag
aagaggaagttctcctccttcttcaagagcctcgtcatcgagctggacaaagagctgtat
ggaccagacaaccatctggtggagtggcaccgactgcccacaacccaggagaccgacggc
ttccaagtgaagcgtcccggtgatgtcaatgtgaaatgcactctgctgctcatgctggat
caccagccgccgcagtacaaactggaccctcgcctggctcgcctgctcggggtgcacacg
cagacccgtgccagcatcatgcaggcactttggctctacatcaaacacaacaagctgcag
gacagtcatgagaaggagtacatcaactgcaaccgctacttccgccagatctttaattgc
gtccgcatgcgcttctcagagatccccatgaagctggcagggctcctgcagcacccggat
cccatcatcatcaaccacaccatcagcgtggaccccaacgaccagaagaagacagcttgc
tacgacatcgatgtggaggtagatgatcccctgaaagctcagatgagcaactttctggct
tccaccaccaaccagcaagagatcgcttccctggatgccaagattcacgagaccatcgag
tccatcaaccagctgaagacgcaacgcgatttcatgctcagcttcagcaacaacccacag
gatttcatccaggagtggatcaaatcccagaggagggacctaaagatcataacagacgtg
attgggaaccccgaggaggagcggcgagctgagttctaccagcagccctgggcgcaggag
gctgtgggcaggcacatcttcgccaaggtccagcagcgtcggcaggaactggaacaagtg
ctcggaatccgcctcacttaa
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