Cuculus canorus (common cuckoo): 104054451
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Entry
104054451 CDS
T08597
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104054451
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cuca03041
]
104054451
Enzymes [BR:
cuca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104054451
Spliceosome [BR:
cuca03041
]
Complex C
Other components
Step II factors
104054451
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
GIPC1_GH2
Transformer
AAA_19
nSTAND3
Flavi_DEAD
AAA_16
T2SSE
TsaE
PhoH
ABC_tran
Sigma54_activ_2
OB_RRP5_4th
Motif
Other DBs
NCBI-GeneID:
104054451
NCBI-ProteinID:
XP_053944188
LinkDB
All DBs
Position
25:4395860..4428186
Genome browser
AA seq
1193 aa
AA seq
DB search
MAEVAALDELAKLEYLSLVSKVCTELDNHLGINDKDLAEFVINLAEKNSTFETFKAVLLK
NGAEFTDSLISNLLRLIQTMRPPPKPSMSKEALVKPKSEKEKLKELFPALCRPDDPNVRT
MLDEDDVKVAADALKELEALMPSADRQGKHRNSDHRSKRKRSRSRSRSRDRKRRHRSRSR
SRSRTRDRNRGKSRYRSRSRSRSPCRDRKDREKYVERSNERWRDKHVDRPPPEEPSIGDI
YNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFT
GSKTSLSMKDVDQDTGEDLNPNRRRNLVGETNEETSMRNPDRPSHLSLVNAPEVEDDSLE
RKRLTRISDPEKWEIKQMIAANVLSKEEFPDFDEETGILPKVDDEEDEDLEIELVEEEPP
FLRGHTKQSMDMSPIKIVKNPDGSLSQAAMMQSALAKERRELKQAQREAEMDSIPMGLNT
HWVDPLPDVDGRQIAANMRGIGMMPNDIPEWKKHAFGGNKASYGKKTQLSIIEQRESLPI
FRLKEQLIQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVA
KRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEA
HERTINTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEIL
YTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSLGPDVPEL
IILPVYSALPSEMQTRIFDPAPPGSRKVIIATNIAETSLTIDGIYYVVDPGFVKQKVYNS
KTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLAS
TVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEP
MLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQTEGDHLTLLA
VYNSWKNNKFSNPWCYENFIQARSLRKAQDIRKQMLGIMDRHKLDVVSCGKATVRVQKAI
CSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTT
IDPRWLVEFASAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRISRAFRRR
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggtggcggctctggatgagctcgccaagctcgagtatctgtcgctggtgtcc
aaggtgtgcaccgagctggacaaccacctgggcatcaacgacaaggacctagctgagttt
gtgatcaatcttgctgaaaaaaacagtacgtttgagaccttcaaagcagttcttctaaag
aacggggccgagttcactgattcccttatcagcaacttgctacgactcatacagacgatg
cggcctccaccaaaaccgtctatgagcaaagaggcacttgtcaaaccgaaatcagagaag
gaaaagctgaaggagttgttccctgccctttgcaggccggatgatcccaacgtcaggacc
atgctggatgaagacgacgtgaaagtggctgctgatgcacttaaagaacttgaagctttg
atgcccagtgccgacagacagggcaagcacaggaacagcgaccacaggtcaaagaggaag
aggagccgaagccgtagccgtagcagggacaggaaacgaaggcacagatctcgttctagg
tctcgttctaggactcgggataggaacaggggaaaatccagataccggtcaaggagcaga
agtcgaagtccctgtagggaccgtaaggatcgagagaagtacgttgagaggagcaatgag
agatggagagacaagcacgtagaccgtccaccgcctgaggagccttccatcggggacatc
tacaatggcaaagtgacgagcataatgcaatttggatgctttgtgcagctggaaggactg
aggaagcgttgggagggcttggtgcacatctcggagctgcgaagggaaggacgagttgcc
aatgttgctgatgttgtgagcaaaggacagagagtgaaagtcaaagtgttatcctttact
ggatccaaaaccagcctcagcatgaaggacgttgatcaagacactggggaagatttgaat
ccaaaccggaggagaaacctggttggagaaaccaatgaagaaacctctatgagaaaccct
gacagacccagtcacctgtccttggtgaacgccccggaggtggaggatgacagcctcgaa
cggaaacgccttacccggatttcagatccagagaaatgggaaataaaacagatgattgca
gctaatgtgctttccaaggaagaatttcctgactttgatgaggagactggaattcttcct
aaagttgatgatgaagaagatgaggaccttgagatagagttggttgaagaagagccgcct
ttccttcgaggtcatactaaacagagcatggatatgagtcccatcaaaatagtaaagaat
ccggatggttccttgtcccaggctgcaatgatgcagagtgctttggctaaagaaagacga
gagctgaaacaagcccagagagaagcggagatggattccatccccatgggactcaacacg
cactgggtagatcctctccctgacgtggatggcagacaaatagctgcaaacatgcgaggt
attgggatgatgccaaatgatatcccagagtggaagaaacatgcatttggtggcaacaaa
gcctcttatggtaaaaagacccagctttccatcattgagcagagagagagtctcccaatc
ttcagactgaaggagcagctgatacaagcggtgcatgacaaccagattctgattgttatt
ggagagacaggatctgggaaaacaacacagatcacccaatacctggctgaagcaggatat
acgtcaagaggaaagattggatgtactcagcctcgcagagtggctgcgatgtctgttgcg
aagagggtgtcggaggagtttggttgctgcctgggacaagaggttggctacaccattcga
tttgaagactgcacgagccccgaaaccgttatcaaatacatgacggatggtatgttactg
agggagtgcttgatagaccctgacctgactcagtatgccattatcatgctggacgaagcc
cacgagaggaccatcaatacagatgtgctctttggactcctgaagaagacagtgcagaag
cggcaagatatgaagttgatagtgacttctgcaaccctggatgctgtgaaattctctcag
tacttctatgaagcaccgatcttcacaattcctggcagaacgtacccggtcgaaatcctg
tacacaaaagagccagagacggattatttggatgccagtctgattacagttatgcagatc
cacttaacagagcctccaggtgacattttggtgtttctaactggtcaggaagagattgac
actgcctgtgaaatcctgtacgagaggatgaaatctctaggacctgacgttccagagtta
attatcctgccagtatattcagctttacccagtgaaatgcaaaccaggatctttgaccca
gctccaccaggaagcagaaaggttatcatcgccactaacattgctgagacgtctttgact
attgatggcatatattacgtagttgatcccggctttgtgaagcagaaagtttataactcc
aagactggaattgaccagctggttgtgacgccgatttcccaggctcaagcgaagcagcga
gcaggaagggctgggagaactggaccaggaaaatgctataggttatatacagagcgtgcg
tatcgagatgaaatgctaaccaccaatgtgcctgaaatccagagaactaatttggccagt
acagtgctttccctgaaggctatgggcatcaacgatctgctctcctttgactttatggat
gctcccccaatggaaactctaataacagccatggagcagctctacaccctgggagctctg
gatgatgagggactgctcactcgactgggacgcaggatggcggagttccccttggaacct
atgctgtgtaagatgctgatcatgtccgtgcatctgggatgcagcgaggaaatgttgacg
atagtctccatgctgtctgtacagaatgtgttctacaggccgaaggataaacaagcgctt
gctgatcagaagaaagccaagttccatcagacagaaggcgaccacctcacacttctggct
gtgtacaattcctggaagaataataagttttcaaatccctggtgctatgaaaattttatc
caggcccgatctttacgcaaggcacaagacatccgcaagcagatgctgggcattatggac
aggcacaagctggatgtggtgtcgtgtgggaaggcaacggttcgagtccagaaggctatt
tgtagtgggttcttccgaaatgcagcaaagaaggatccccaggaaggttatcggactctt
atcgatcaacaagtagtttatatccacccatccagtgctctcttcaacaggcagccagaa
tgggtggtgtaccatgaactggtgctgaccaccaaggaatacatgcgtgaagtgacgact
attgatcctcgctggctggtggagttcgcgtctgctttcttcaaggtttctgacccaact
aagctgagcaaacagaagaagcagcagcggctggaacccctgtacaatcgctacgaggag
cccaacgcttggaggatatcacgtgcattcagacggcgatga
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