Cuculus canorus (common cuckoo): 104054532
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Entry
104054532 CDS
T08597
Symbol
COL17A1
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
104054532 (COL17A1)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
DUF5006
Motif
Other DBs
NCBI-GeneID:
104054532
NCBI-ProteinID:
XP_053927872
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All DBs
Position
7:12622693..12665059
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AA seq
1545 aa
AA seq
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MDSVTKKTRQDGSEVTERLITETVTTRLTSLPPMSFLFSSFILRDCLILCSSLPEGGSSS
GLKTSSHTGGSGVEKRSYTHSSSYVTSGGSGRLNSTSSSSGYRQTHSPNSTLTKSPGSTF
ERKTYVNRHATYEGSSSANSSPEFPRKEFGSASTRGRSQSRESEIRVRLQSASPSGRWTE
LDDVKRLLKGSRSASCSPTRSPSSTLPIPKKAVVETKMVTESSQSVSGTYDTTILNTALP
SYMWSSTLPARSSLGGYQTSSSLINAMSHSTGSVFAVPNNLAPSNHTLNTGLSSSSTVFG
VQNNLSPGSSTLTQNATAASAAYGMKNTSQSNNMASTGVSASAGGTVLSSQGDDVLRKDC
KFLLLEKENAPAKKEMELLVMTKDSGKVFSASTTGLNGGSFAEDTLKKEKQGFSSSYATD
TGLKSDANGGLKSVPTRDKATYAEIRNGDMGGAVGSAGGAVGSAPSWCPCGSCCTWWKWL
LGLLLAWLLLLGLLFGLIALADEVRKLKSRVENLEQINGGLLARNQGNFKIEKDAAGVDF
LHGISPSSTFSYENDESVWLMVKSRLNKEIERGYFRGERGEPGQKGDMGMQGPRGERGLP
GAPGIPGPIGHQGPEGPKGQKGSMGDPGMEGPMGQRGREGLPGPRGEPGPPGFGEKGDRG
AVGEPGPPGPPGPPGPAGLKGLMGSPGPQGPPGPPGLQGFRGEAGLPGAKGEKGATGAPG
PKGDQGEKGSRGMTGEQGARGIPGPPGEPGAKGPAGPAGRDGQPGEKGEPGLMGMPGARG
PPGPTGDAGQPGLTGPQGPPGLPGNPGRPGDKGEPGPPGKVISAEGSSTIALPGPPGPPG
PPGPTGPPGVPGPVGPAGLPGQQGPRGEKGSPGEAVIETIKSEVSSLASQMLGDLPGRAG
PPGPPGPPGESVQGPPGPPGPPGQGLPGPPGPPGRSGSSMSTSETFLTGPPGPPGPPGPK
GDQGERGPRGFTGEPGEPGLSAFSSHGERVTIQGPPGVPGPPGPPGPKGDAGVPGAPGIP
GASRGGSRQIQGPPGPPGPPGPPGPGGSSSQDIQQYIVDYLKSDNVRHYLTGVQGPPGPP
GPPGVITTADGINLDYAELATRVMSYMTSSSDRYQSFASSVSTTSILYQELLDMLQREEI
RQYLIGPRGPPGPPGPGGDGMSLSLDYDELTRRFISYLTSSGMSIGLPGPPGPPGTPGIS
YSDLTAYLRNSEFSGLVGPPGPSGPPGPPGIPGSPGSSLEDISAYLQSVGYSSLSGVRGP
PGPPGPPGPPGFSGTGLLSYADITNNDEFRSELIQYLKSDEIRSYISGPPGPPGPRGPPG
PKGDSGLVAGSMSSSYQGLRTSEQLHGRSLGAEGSHGGSLGTGSSYGSSMSSMSSYSASM
GSDGSYDASVGSDRSFDALLTEEESHRSAGSSRSYSSSFTGSLDYNELALRVSESLQSQG
ILQDLMSYTAQGPAGPPGPPGPPGVSRVFAAYGNVTEDLMDFFRKHGTIQGPPGEKGERG
YPGPKGDPGPMGPPGRQGHRGPKGEKGEKGEQMYVGRRKRRNVGV
NT seq
4638 nt
NT seq
+upstream
nt +downstream
nt
atggattctgtaacaaagaaaacgagacaagatggatcagaagttactgaaagacttatt
acagagactgtaaccacaaggctgacgtccttaccacccatgtcctttctcttctcatct
tttatcctgagagactgtctcattttgtgttcatctctcccagaaggagggagcagcagt
gggctcaaaacatcatcccacactggagggagcggagtggaaaagaggtcttacacgcat
agcagcagctacgtgacttcaggtggaagtggtagactgaattcaacatcatcgtcctct
ggctacagacaaacccattctcccaattctactctcaccaaatcacctggctcaacattt
gaaagaaaaacctatgtcaaccgccatgcaacatatgaaggaagctccagtgccaactct
tctcctgagtttcccagaaaagagttcggatctgcctccacaagagggagaagccaaagt
cgagagagtgaaatacgagtccggctgcagagcgcttctccctctggcagatggacagag
ttggatgacgtgaagcgtttgctgaaaggaagtcgatcagccagctgcagccctacccga
tcaccatcaagtacgctcccgataccaaaaaaggctgtggtggagacaaagatggttact
gagagttctcagtcagtgtcggggacatatgatacaaccatactgaatactgccctccct
tcgtacatgtggtcctccactctgcctgctaggtcttcccttggcggataccaaactagc
tcttctttgatcaatgctatgtctcattctacaggatcagtttttgctgttccgaacaac
ctggctcccagcaatcatactctgaacacaggcctgagctcctcctctacagtgtttgga
gttcaaaacaacctgtctccaggctcttcaaccctcacccagaatgccactgcagcctcc
gcagcatatgggatgaagaacacttctcagagcaacaacatggcaagtactggtgtgtct
gcctcagcaggtggaacagttttgagctcccaaggagatgacgttctgcgcaaagactgc
aagttcttgctgctggagaaggagaatgctccagcaaagaaggagatggagctcttggtc
atgacaaaggacagcggcaaagtctttagtgcatctaccactgggcttaatggaggatcc
tttgcagaagacaccttgaagaaagagaagcagggattttcctcctcttatgctacagat
actggcctaaaatcagatgcaaatggagggctgaaatctgtgccaacaagggacaaagca
acttatgcagaaatacgaaatggtgatatggggggtgcagttggatctgcggggggtgca
gttggatcagcaccatcctggtgtccctgtggttcctgctgtacctggtggaaatggctc
ctgggtttgcttctggcctggttgcttctccttggattgctttttggactcattgctctg
gcggatgaagtgagaaagctgaaatctcgtgtggaaaatctggaacaaatcaatggtggc
ctcctggcaaggaaccaagggaatttcaaaatagaaaaggatgctgcaggagtagacttt
cttcatggtatttcaccctcttcaaccttctcttatgaaaatgatgagtcagtctggttg
atggtgaagagcagactgaacaaggaaatagaacgaggctacttccgaggggaaagagga
gaacctggtcagaaaggtgacatgggaatgcaaggtcccagaggagagcgaggacttcct
ggtgccccaggcattcctggtccaattgggcaccaaggaccagaaggaccaaaaggacag
aaaggcagcatgggtgatcctggcatggaaggtcccatgggacaaagaggtcgagaaggg
ctaccagggcctcgaggggagcctggaccacctggatttggagaaaaaggagacagaggt
gctgttggtgagccgggtcctccaggaccacctggtcccccaggtcctgctggccttaaa
ggtctgatgggttctccaggcccacaaggtcctccaggtcctcctggcctacaaggattt
agaggggaagcaggtcttccaggtgctaaaggtgagaaaggagccactggagcccctgga
cccaaaggtgatcagggtgagaagggttctcgtggaatgacaggtgaacaaggtgcaaga
ggaatacctggtcctcctggagagccgggggctaaaggacctgcaggaccagctggccgt
gatggacagccaggtgaaaaaggtgaaccaggtcttatgggaatgccaggagcccgaggc
cctccaggacccacgggagatgcaggacagccaggtctgacaggaccccagggaccacca
ggacttccaggcaacccaggacgaccaggtgataaaggagaacctggacctccaggaaaa
gtcataagtgctgaaggttcgtcaactattgctctgccaggcccaccaggtcccccaggc
ccacctggccccacaggacccccaggtgttccaggtcctgttggaccagctggtctccct
ggacaacaaggtccacggggtgagaagggatctccaggtgaagctgtgatagaaactatc
aaatcagaagtctcgtcattagcatctcaaatgctaggagatttaccagggcgagcagga
ccaccaggtccccctggaccaccaggtgaatctgtgcagggtccccctgggcctcctggc
cctccaggacaaggattgccaggacctccaggcccaccagggagatcagggtcttcgatg
tccacctcagaaacattcctcacaggcccaccaggtccaccaggcccaccaggcccaaag
ggagaccaaggtgaacgaggtccacgaggattcacgggagaaccgggtgagcctggcctt
tcagcattctcctcccatggtgaaagagttaccatacagggacctccaggagttccaggc
cctccaggcccacctggacccaaaggtgatgcaggtgtcccaggcgctcctggcatccca
ggagcatctcgagggggatccagacaaattcagggacctccaggacctcctgggccacct
ggtcctcctggcccaggtggaagttcatctcaagacattcagcagtatattgttgactac
ctgaaaagtgacaatgtaaggcattatttgactggtgtccaaggcccaccaggccctcca
ggcccacctggagtcatcaccactgcagatgggataaacttggattacgcggagctggct
acccgtgttatgagctacatgacaagctcttcagatcgctatcagtcatttgctagctct
gtatcaactacatccattttgtaccaagaacttctggatatgctgcagagagaagaaatt
cgtcagtatctaattggacctcggggcccaccaggacctcctggaccaggaggagatggc
atgtctctgtcactggattacgatgagctgaccagacgatttatcagctatttgacaagt
tctgggatgagcattgggcttcctgggccacctgggcctccagggacacctggtatatct
tacagtgacctaacagcatacctgcgaaactctgaattcagtggtcttgttggcccccct
ggtccttcaggacccccaggacctccaggaatccctggatcacctggcagctctctggag
gacatctctgcttacctacaaagtgtgggatactcttccctctctggagtccggggtcca
cccggccctcctggacctccaggaccaccaggcttctcaggaactggcctcctgtcctat
gctgacatcaccaacaatgacgagttcaggagtgagctgatccagtacctgaagagtgat
gaaatccgaagctacatttcagggccacctgggcccccagggccacggggaccgccagga
cctaaaggagatagtggcttggtggctgggtctatgtcttcatcatatcaagggctacgg
acttccgagcagttgcatggaagatcccttggtgctgagggatcccatggaggatcactg
ggtaccggcagctcatatggcagctccatgagcagcatgtcatcttatagtgcctcaatg
ggcagtgatggctcttatgatgcctccgtgggcagcgacaggtcttttgatgcattactg
acagaggaggaatcacacagatcagcgggttcaagcagatcctacagcagctccttcact
ggatccctggattacaacgagctggctctccgtgtgtcagaaagcctacagagccaaggt
attctccaggacctgatgtcttacactgcacagggacccgcaggtcccccaggacctcct
ggcccccctggtgtcagcagggtttttgcagcctatggcaatgtcactgaggacctcatg
gacttctttagaaaacatggtaccatccaggggccacctggtgaaaagggagagagaggc
taccctggacccaaaggtgaccctggaccgatgggcccgccaggccgccaagggcataga
ggaccaaaaggagagaagggagagaaaggtgaacaaatgtatgttggcagaaggaaaaga
agaaatgttggggtttaa
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integrated database retrieval system
