Cuculus canorus (common cuckoo): 104054721
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Entry
104054721 CDS
T08597
Symbol
TAF5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
104054721 (TAF5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cuca03021
]
104054721 (TAF5)
03036 Chromosome and associated proteins [BR:
cuca03036
]
104054721 (TAF5)
Transcription machinery [BR:
cuca03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
104054721 (TAF5)
Coactivators
SAGA/TFTC/STAGA complex
104054721 (TAF5)
Chromosome and associated proteins [BR:
cuca03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
104054721 (TAF5)
STAGA complex
104054721 (TAF5)
TFTC complex
104054721 (TAF5)
SAGA complex
104054721 (TAF5)
SLIK complex
104054721 (TAF5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_IFT122_1st
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
TFIID_NTD2
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
Beta-prop_WDR36-Utp21_1st
Beta-prop_VPS8
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_TEP1_C
DSE1_N
Beta-prop_Aladin
PAC11
Beta-prop_RIG_2nd
Beta-prop_SCAP
CFAP251_N
Beta-prop_WDR41
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_DCAF12
ASA1
Beta-prop_SPT8
Beta-prop_NOL10_N
WD_LRWD1
Beta-prop_Nup120_160
Tricorn_2nd
DNAI3_WD
PEP5_VPS11_N
CDK5RAP3
Beta-prop_ACSF4
RAB3GAP2_N
eIF2A
VID27
Motif
Other DBs
NCBI-GeneID:
104054721
NCBI-ProteinID:
XP_053927778
LinkDB
All DBs
Position
7
Genome browser
AA seq
783 aa
AA seq
DB search
MAALPEEPAEVAAVKPDPDAGTPPQPPAAPPAASAAPAATAAAEGDVAGAGGDAAPAKAA
AAGPAGSPAALDRQTLVAVLQFLRRSNLRESEEILRREARLLGDDLGTVALSPAGPLGGP
GGDGDSAGSEALLSRVTATAPVAIGGSVAAVASSSPGVAAVAALPPGKVGGGVAVEDQPD
VSAVLSAYNQQGDPTLYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHE
SEAKSFFERFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLL
KRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKAKVFFGLL
KEPEFDVPLDDEDEEGENEEGKPKKKKPKKDSVGSKSKKQDPNAPPQNRIPLPELKDSDK
LDRVMNMKEAARRVRLGPECLPSICFYTFLNAYQGLTAVDITDDSSMIVGGFADSTVRVW
SVTPKKLRSVKTAADLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGTSFSPDRNY
LLSCSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHY
QPLRIFAGHLADVTCTRFHPNSNYIATGSADRTIRLWDVLNGNCVRIFTGHKGPIHSLAF
SPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTIYALRFSRDGEILASGSMDNTVRL
WDAVKAFEDLETDDFTTATGHINLPENSQDLLLGTYMTKSTPVVHLHFTRRNLLLAAGAY
SSQ
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctgcctgaggagccggccgaggtggcggcggtgaagccggaccctgatgca
gggacgccgcctcagcctcccgccgctcccccggccgcttccgccgctcccgcggcgacc
gcggcggcggagggagatgtggcgggggccggcggggacgcggcgcccgccaaggccgcg
gcggcgggcccggccggctcccccgcggcgctggaccggcagacgctggtggccgtgctg
cagttcctgcggcgcagcaacctacgcgagtccgaggagatcctgcgccgcgaagcccgc
ctgctcggcgacgacctgggcaccgtcgctctcagccccgccggcccactgggaggcccg
ggcggcgacggggactccgccggcagcgaggcgctgctcagccgtgtcaccgccacggcc
cccgtcgccatcgggggcagcgtcgctgctgtcgcctcttccagccctggggtggcggct
gtggccgctctgccgccgggaaaagttggaggaggtgttgctgtggaagatcagccagat
gtgagtgcagtattgtctgcctacaatcaacagggggacccaacactgtacgaggaatac
tacagtggattaaaacacttcattgagtgttccctggactgtcatcgagcagaattgtct
cagctgttttatcctctctttgtgcacatgtacttggaattggtctacaatcaacatgag
agtgaagcaaagtctttttttgaaagatttcatggggatcaggagtgctattaccaggat
gacctgcgtgtattatctagcttaaccaaaaaagaacatatgaaaggtaatgagaccatg
ctggatttccgaacaagcaagtttgtgctgcgcatttcccgtgactcctaccaactcttg
aagaggcatcttcaggaaaagcagaacaatcagatctggaacattgttcaggagcatctt
tacattgatatattcgatggaatgcctcgcagtaaacaacagatagatgctatggttgga
agcttggctggggaggcaaaacgagaggccaataaagcaaaggttttctttggcttattg
aaagaaccagagtttgatgtgcctttggatgatgaagatgaagaaggagaaaatgaggaa
ggaaagccaaaaaagaaaaaacctaaaaaagatagtgtagggtcaaaaagcaaaaaacaa
gaccctaatgctcctccccaaaacagaattcctctgcctgaactgaaagactctgacaag
ctggatagagtcatgaatatgaaggaagctgcaaggcgtgtgcgtcttggcccggagtgc
ttgccctccatctgtttctacacattcctgaatgcttaccagggtctgactgccgtggat
atcacagatgactctagcatgattgtaggcggttttgctgactctactgtcagagtgtgg
tccgtgactccgaaaaagctacgtagtgtgaaaacagcagcagacctcagtctcattgac
aaagaatcagacgatgtcttggagaggatcatggatgagaaaacagcaagtgagttgaag
attttatatggtcacagtggacctgtctatggcaccagcttcagtcctgataggaactat
ctcttgtcctgttctgaggatggcactgtcagattgtggagcctccaaacattcacatgt
ttggtgggatataaaggacacaactacccagtatgggatacacagttctctccttatggt
tattactttgtgtcagggggacacgacagagtggctcgtctgtgggccacggatcactac
cagcctttacgaatatttgctggccatcttgctgatgtcacatgtactcgatttcatcca
aactccaactacattgccacgggctcggcagataggactatacggctctgggatgttttg
aatgggaattgtgtgagaatattcactggacataagggaccaattcattcattggcattt
tctcctaatggacgattcttggctactggagcaacagatggaagagttctgctgtgggat
attggacacggcttgatggttggagaattgaaagggcacactgacactatctatgcgctg
agattcagtagagacggggagattttagcatcaggttcaatggataacacagttcgcctc
tgggatgctgtgaaggcatttgaagatttagaaaccgatgactttactacagccactgga
catataaacttgcctgaaaactcacaggacttgttactgggcacctacatgaccaaatcg
accccggttgtacacctccactttacccgcagaaacctgctgctggctgcaggagcttac
agttctcagtaa
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integrated database retrieval system
