Cuculus canorus (common cuckoo): 104054804
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Entry
104054804 CDS
T08597
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104054804 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuca03019
]
104054804 (MTREX)
03041 Spliceosome [BR:
cuca03041
]
104054804 (MTREX)
03009 Ribosome biogenesis [BR:
cuca03009
]
104054804 (MTREX)
03016 Transfer RNA biogenesis [BR:
cuca03016
]
104054804 (MTREX)
Enzymes [BR:
cuca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104054804 (MTREX)
Messenger RNA biogenesis [BR:
cuca03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
104054804 (MTREX)
Spliceosome [BR:
cuca03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
104054804 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
104054804 (MTREX)
Ribosome biogenesis [BR:
cuca03009
]
Eukaryotic type
Pre-60S particles
Helicases
104054804 (MTREX)
Transfer RNA biogenesis [BR:
cuca03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
104054804 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
104054804
NCBI-ProteinID:
XP_053909639
LinkDB
All DBs
Position
Z:8391095..8435947
Genome browser
AA seq
1032 aa
AA seq
DB search
MADAFGDELFSVFEEDSAASGAKKTKAAAGEGARRPGKRSEEKSSVAATGKPKREVEIDS
TEHAVLGKKPKLEDVVSEDANLADLMPQVKVQAVETVEGCTHEVALPADEEFTGLKPRTG
KAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVI
FDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTD
YRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKG
PSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDC
LSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGIN
MPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQ
LLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNTLEG
QYNKIGIPNEENVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNEGDDFG
WGVVVNFSKKSNVKPNSGELDPLYVVEVLLYCSKESLKNSATEAAKPARPDEKGEMQVVP
VLVHLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQGL
KKVIQKVEAFEHRMYSHPLHNDPNLETVYKLCEKKAQIAMDIKAAKRELKKARTVLQMDE
LKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLTAEQATALLS
CFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLMDVV
YTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKI
KRDIVFAASLYL
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgccttcggggacgagctgttcagcgtgttcgaggaggactcggccgcctcc
ggcgccaagaagaccaaagcggctgccggcgagggcgccaggaggccggggaaacgatca
gaggaaaaatcttccgtagctgcgacaggaaagcccaaaagggaagttgagattgatagc
accgaacatgctgttttgggaaagaagccaaaattggaagatgttgtatcagaagatgct
aatctggcagacctgatgcctcaagtaaaggtgcaagctgtcgaaactgttgaaggttgt
acgcatgaggttgcacttccagcagacgaggagttcaccggtctgaagccaagaactgga
aaagctgcaaaagaatatccatttattcttgatgcctttcagagagaagctattctttgt
gtagataataaccagtctgtgttggtgtcagctcatacatcagctggtaaaactgtttgt
gcagagtatgcaattgccctggctttgagggagaaacagcgtgtgatatttacaagccca
attaaagctttgagtaatcagaagtaccgtgagatgtatgaagaatttcaggatgttggc
ttgatgactggggatgtcaccattaatcctacagcttcttgtttggtaatgacaactgag
attttgagaagcatgctttacagaggttctgaggttatgagggaagtcgcttgggttatt
tttgatgaaattcactacatgagagattcagaacgtggtgtggtttgggaagagacgatt
attttactccctgacaatgttcactatgtattcctttctgcaacaattccaaatgcccgt
caatttgctgaatggatctgccatcttcacaaacagccttgccatgtgatttacactgac
taccgacccactccactgcagcattatatattcccagcaggaggagatggactccatctg
gttgttgatgaaaatggagatttcagggaagataattttaatacagcaatgcaagtactt
agagatgcaggagacttggcaaaaggggaccagaagggcaggaaaggaggaacaaaaggt
ccttcaaatgtttttaagattgtaaagatgatcatggaaaggaatttccagcctgtgatt
attttcagcttcagtaaaaaagactgcgaagcctatgcacttcagatgacaaagttagat
ttcaatacagatgaagaaaaaaagatggttgaagaagtgttcaataatgcaattgattgt
ctgtcggatgaagacaaaaagcttcctcaggttgagcatgtacttcctcttctgaagcga
ggaattggtatccatcacggcggtctgcttcctatcttaaaagaaaccatagaaattctg
ttctctgagggcctaataaaggccttatttgcaacagagacttttgctatgggaattaat
atgccagccaggactgtgctatttacaagtgccagcaaatttgatggaaaagatttccga
tggatatcctcaggtgaatacattcaaatgtcaggtcgtgcaggacgacgaggtatggat
gacagagggatagtaattcttatggtggatgaaaaaatgagtccaacaatcggcaagcag
cttttgaagggttcagctgatcctttaaatagtgcattccacctgacatacaacatggta
ctgaacttgcttcgagtagaggaaattaaccctgaatacatgttagaaaaatccttctat
cagttccaacattacagaacgattcctgaaatagtagaaagggtgaatactttggaagga
caatacaacaaaataggaattccaaatgaagaaaatgtggtcatatactataaaatccga
cagcagcttgcaaagctgggtaaagagattgaagagtacattcacaaaccaaagtattgc
ttgcccttcctacagccaggaagactggtaaaggtgaagaacgaaggtgatgactttgga
tggggagtggttgttaatttctctaagaaatctaatgtcaagcctaattctggtgaattg
gacccattatacgtagtcgaagtgctactttactgcagcaaagagagtttgaaaaattct
gctactgaggctgcaaagccagccagacctgatgagaaaggagagatgcaggtcgttcct
gttttggtgcatcttctctcagctatcagcagtgtccgactttacataccgaaagacctg
aggcctattgacaacaggcaaagtgttttaaaatccatacaagaagtacagaagcgattt
cccgatggagtgccgttactggaccccattgatgatatgggcatcaaagatcaaggactg
aaaaaagtaatccaaaaagtagaggcatttgagcataggatgtattcacatcctcttcac
aatgatcccaacttggaaactgtgtacaaactttgtgaaaaaaaagcacagattgctatg
gatattaaagcagcaaagcgagaactgaaaaaagccagaactgtcttacaaatggatgaa
ctcaaatgccgcaagcgtgttttgagaagacttgggtttgccacatcctcagatgttatt
gagatgaaaggacgggttgcttgtgaaatcagcagtgctgatgagctactcctgacagaa
atgatgttcaatggtctcttcaatgacttaactgcagaacaggcaactgcactactgagc
tgttttgtgtttcaagagaattccagtgaaatgccaaaattgacagagcagttggctgga
ccgcttcggcagatgcaggagtgtgcaaaaagaattgccaaggtgtcagcagaagcaaaa
ctggaaattgatgaagaaaattacttaaattctttcagacccaacctaatggatgttgtg
tatacatgggcgaatggagctaactttgctcacatctgcaaaatgactgatgtctttgaa
ggtagcataattcgttgcatgagaaggttagaagaattacttcggcagatgtgccaggct
gcaaaagctattggaaacacagagctggaaaataagtttgcagaagggattacaaaaatc
aagagagatattgtgtttgctgcaagcctttacctgtaa
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