Cuculus canorus (common cuckoo): 104054825
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Entry
104054825 CDS
T08597
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain
KO
K16617
collagen type XIII alpha
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cuca00536
]
104054825 (COL13A1)
Glycosaminoglycan binding proteins [BR:
cuca00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104054825 (COL13A1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
104054825
NCBI-ProteinID:
XP_053927533
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All DBs
Position
7:34424275..34488396
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AA seq
643 aa
AA seq
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MGIPGRPGLKGQPGEKGAPGEAGMSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGQK
GEMGAAGPRGQPGPPGQKGEKGQCAEYPHREYLSTTLAALRSNQILTLKGEQGQAGIQGP
PGPPGPPGPAGPAGPEGIPGQPGPIGPPGRVGEPGKPGRDGKGLPGPPGPKGDPGVQGYP
GRKGEAGESGLPGARGLPGATGPKGAPGISAAGMKGEPGTPGEKGDPGVPGRMGPPGLPG
KRGQRGEKGRAGDPGLPGLPGMKGEKGNAENSLAGGKGEPGPPGLPGPPGPKGEAGDAGR
PGAAGSQGEKGEPGSPGHQGPMGPRGPKGEPGKDEMVDYDGNISEALQEIRTLALMGPPG
LPGVAGPPGPPGQKGEIGLPGPPGHDGEKGPRGKPGETGPPGPQGLPGKDGPPGIKGEPG
HIGVTGEKGDKGEPGQAGSPGLDGPTGEKGERGDQGMPGPSGLPGPIGLPGLTGDKGEPG
ERGDKGNPGESIPGPTGPQGPPGPPGLQGVPGPKGEAGIDGTKGEKGAQGEKGDRGPLGL
PGASGLDGRPGPPGIPGPIGVSGPAGPKGERGSKGDPGAVGPMGPAGLPGLQGLPGDKGI
RGERGKKGSRGSKGDKGDQGAPGLDAPCPLGEDGLPVQGCWNK
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atggggatccctgggcggccgggactaaaagggcaacctggagagaagggtgctccagga
gaagcaggcatgtctatcattgggcctcgcggtccacccggacaacctggaacaagaggt
tttcccggattcccgggtcctattggcttggacggcaaaccaggtcatcctggacagaag
ggggagatgggtgctgcaggtcccaggggacaacctggacctccaggacaaaaaggagaa
aagggtcaatgtgcagagtacccacacagggaatacctaagtaccacccttgcagccctg
cgctctaaccagatccttacgctaaagggtgaacaaggacaagcaggaatccaaggtccc
ccaggtcctcctggtcccccagggcctgccggaccagctggacctgaaggaattccagga
cagcctgggccaattgggccacctggcagagtgggagaacctgggaagcctggaagagat
ggaaagggtttacctgggcctcctggaccaaagggagaccctggggttcagggataccct
ggcagaaagggtgaggcgggtgagtcaggtctgcctggagcacgtggcctccctggagct
actggccccaagggcgctcctgggatctccgctgcagggatgaagggcgagccggggact
ccaggagaaaagggagatcctggagtcccagggaggatgggccccccaggtttgccaggg
aagagggggcagcggggtgagaagggacgagctggtgatcctgggcttcctggactccct
ggcatgaagggagagaagggaaatgctgagaattccctggcaggaggtaaaggagaacct
ggcccaccaggtctgcctggcccacctggaccaaagggagaagctggtgatgctggccga
cctggtgctgcagggtcacagggagaaaagggagaacctggttcaccgggacaccaggga
cccatgggcccaaggggcccgaaaggagagcctgggaaggatgaaatggtggactacgac
ggtaacatcagtgaagctctccaggaaatacgaactttggccttgatgggacccccagga
cttccgggagtggctggtcctccagggccaccgggacagaagggtgaaattggcttgcca
ggtcctccaggccatgatggagaaaagggaccacgtggcaagcctggagaaacgggcccc
cctggccctcaagggcttccaggaaaggatggaccccctggaataaaaggagagccaggc
catatcggggtcacaggagaaaagggtgataaaggagagccaggacaagccggctcaccg
ggtcttgatggccccactggagagaaaggcgaacgaggtgaccaaggaatgccaggacca
tcaggattgccgggtcccattggacttccaggactgacaggagacaagggagagcctggg
gagcgtggagacaaaggaaatccaggagaatcgatacctggccccactggaccccaaggc
ccaccaggacctccaggtcttcagggcgtcccaggaccgaagggggaagcagggattgat
ggaacgaaaggagagaagggtgcccagggtgaaaaaggagacagagggccactgggattg
cccggtgcttcaggtttagacggcaggcctggaccaccgggtattccaggaccaattggg
gtttcaggaccagcaggaccaaaaggagaaaggggcagtaaaggagatcctggagctgta
ggaccaatggggccagcagggcttcctggtttacaaggtctacccggtgacaaaggaatc
cggggggagaggggcaagaaaggctctagagggtctaaaggggataagggagaccaagga
gcacctggattagatgcaccctgtccgttgggagaagatggccttccagttcaaggctgc
tggaataagtga
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