Cuculus canorus (common cuckoo): 104055019
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Entry
104055019 CDS
T08597
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca04510
Focal adhesion
cuca04512
ECM-receptor interaction
cuca04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104055019 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104055019 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104055019 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cuca04147
]
104055019 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
cuca00536
]
104055019 (COL4A1)
Exosome [BR:
cuca04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
104055019 (COL4A1)
Glycosaminoglycan binding proteins [BR:
cuca00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104055019 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
104055019
NCBI-ProteinID:
XP_053932423
LinkDB
All DBs
Position
1:complement(2601033..2740245)
Genome browser
AA seq
1669 aa
AA seq
DB search
MRLWLGLGLLLSAELSAVSAAGCSGCGKCDCSGVKGQKGERGLPGLQGVIGFPGMQGPEG
PPGSPGLKGDTGEPGLPGTKGTRGPPGASGFPGNPGLPGIPGQDGPPGPPGIPGCNGTKG
ERGPVGPPGLPGLTGSIGPPGPPGMKGDPGEVIGLLPPSLLKGDKGFPGQPGLPGPPGTP
GFQGVMGPQGPPGEPGPPGPPGLPGEKGYMGLGFQGPKGEKGEQGVRGPPGPPGPAPHMK
EKGSEIIKGEKGDPGEKGEQGFPGLPGSGFKGEKGEPGKPGPRGKPGKDGEPGPKGEAGL
PGGSGIPGRPGEPGAKGDKGERGFPGPPGRVIDAGPIDTFGEKGEPGASGLPGLKGQKGE
KGFPGVQGIPGPPGRPIPDRVGSPGVPGQRGEKGEKGSPGFPLPGPPGRDGFPGPPGLPG
PPGPPGKTDGIDQCQQGEPGSPGIPGPPGRDGFPGEMGEKGDKGESCALCDKEGPPGLPG
PQGPPGPAGFPGQAGFKGDRGLPGLDGIPGVPGPPGTPGLIGSPGAKGEPGDFTYDSILK
GEKGDPGLPGQPGIPGREGRPGKDGLPGLQGPKGTPGTAGLKGDRGPPGQPGFPGVRGER
GFPGPPGIGVPGLPGDKGDRGFAGTPGLPGLPGTKGEAGRTVPLPGPPGADGLPGPPGFP
GPQGDKGNPGLPGRPGLPGEKGAVGQPGIGFPGPPGPKGFPGQPGAPGLPGTPGTPGLDG
LPGVPGLQGQKGEPGVGLPGQKGLPGPPGVPGFPGEKGNPGLPGLRGEQGFPGIPGQQGF
RGDPGLPGLQGLQGPPGAPGLGPQGTPGPPGQPGPQGPPGFPGIKGEKGFPGVPGLDMPG
PKGDKGSQGQPGVPGSVGLPGLPGAQGAVGLKGSSGAKGEMGVMGTPGLPGSPGPVGDRG
LPGEKGSQGFKGIVGPQGDPGVKGDKGEAGLPGKPGTMDNMDMVSLKGQKGDQGEKGDHG
ATGEKGLPGEYGEPGIPGKDGEPGTPGHPGPKGDQGPPGYPGDPGIPGQKGSVGEMGLPG
TPGEKGLPGVPGSPGTPGFPGQKGEKGDKGAPGFPGIGFPGSPGQKGEPGRTGIPGVPGD
KGEKGTAGIPGMPGAPGPKGSPGMAGFPGNPGRHGEKGEKGLPGLSGIPGSKGEPGEPGV
PGPAGSIGQKGEPGYDGIPGAAGAKGEQGIPGRGLPGFPGAKGDKGAKGEVGFPGSPGSA
GIPGPKGEPGYPGPAGPKGSQGLPGLPGSAIEGPKGDRGPQGQPGLPGLPGPTGPPGPPG
VKGAKGEQGSIGWPGTPGGPGVKGDPGFQGVPGSPGLPGDIGQKGDLGPPGVPGIPGPKG
IAGFPGLKGERGDQGLPGSKGLQGPPGPPGAFQLVKGDPGLPGPVGPVGLKGFPGLPGPK
GQQGVTGPPGVPGPPGSPGFDGKPGQKGEVGPYGPPGPRGFPGPPGPEGLPGAMGPPGAP
SVAHGFLVTRHSQTTEEPSCPFGTRLIYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTM
PFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGDNIRPFISRCSVCEAPAMVIAV
HSQTIQIPSCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG
TCNYYANAYSFWLATIERNEMFKKPTPSTLKAGDLRSNVSRCQVCMRKT
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgaggctctggctgggcttggggctgctgctgagcgccgagctcagcgccgtgtcagcc
gcgggatgttccggttgtggaaaatgtgactgcagtggagtaaaagggcaaaagggagaa
agaggcttgccgggactacagggtgtgattgggtttcctggaatgcaaggacctgaaggt
ccccctgggtcaccagggcttaagggtgatactggagaaccaggactgccaggaacaaaa
ggaacaagaggacccccaggagcttcaggctttccaggaaacccaggccttcctggcatt
cctggacaagatggccctcctggcccacctggcattccaggatgcaatggcactaaggga
gaaagaggtccagtaggtcccccaggtttaccaggactgactggtagcataggaccccca
ggacctcctggaatgaagggagatccaggtgaagtgattggtcttttacctcctagtttg
ctaaaaggtgataaaggctttcctggtcaacctggactacctggcccacctggaactcca
gggtttcagggagtaatggggccacaaggacctccaggagaaccaggtcccccagggcca
ccaggactcccaggcgagaagggctacatgggcttgggttttcagggtcccaaaggtgaa
aagggagaacaaggggtaaggggacccccgggaccaccaggaccagcaccacatatgaaa
gaaaaagggagtgagatcataaaaggagaaaagggtgatccaggtgaaaagggtgaacag
ggattcccaggattgccaggttcaggtttcaaaggagaaaagggtgaacctgggaagcct
ggtccacgtggaaagcctggaaaagatggcgaaccaggaccaaaaggagaagccggtttg
cctggtgggtctggaattccaggacgacctggggagcctggtgcaaagggtgacaaaggt
gaacgaggttttccaggacctccaggaagggttatagatgctggaccaattgataccttc
ggtgaaaaaggagagcctggagcttcaggtttgcctgggctgaaaggtcaaaaaggtgaa
aaaggtttccctggtgtacaaggaatccctggacctccaggtcgaccaattccagacaga
gtaggatcacctggtgtccctggacagagaggtgaaaagggtgaaaagggttcaccagga
ttccctttacctggaccccctggaagagatggtttcccaggtcctccggggttgcctggc
ccaccaggtcctccagggaaaaccgacggaattgaccaatgccaacagggagaacctggt
tcaccaggtattcctgggcctccgggaagagatggatttccaggagagatgggagagaaa
ggtgacaaaggtgaatcctgtgccttatgtgataaagagggacctcctggacttccagga
ccacaagggccaccaggtccagcaggttttccaggacaagcaggtttcaagggtgacaga
ggcctacctggacttgatggcattccaggggtacctgggccccccggcactccaggactt
attggcagccctggggcaaaaggagaaccaggagattttacttatgattctatcctgaaa
ggtgaaaaaggagatcctggtttaccaggacaaccaggtattcctggaagggaaggaaga
ccaggaaaagatggattgccaggtctccagggcccgaaaggaacaccgggtactgctggc
ttgaaaggagatcgtggtccacctggccaacctggattccctggagtacgtggtgaaaga
ggttttcctggccctcctgggataggcgttccagggttacctggtgacaaaggagacaga
ggctttgctggaaccccaggtttaccaggccttccaggaacaaagggtgaagcaggacga
actgtaccacttcctggacctcctggggcagatggccttcctgggccacctggtttccct
ggaccccaaggtgacaaagggaatcctgggcttccaggtagacctggtctgccaggagaa
aaaggtgctgttggacagccaggtataggattccctggacctccagggcccaaaggtttc
ccaggtcagcctggcgctcctggtctgccggggactccaggaacccctggcctggatggt
ttgccaggtgtaccaggattacaaggtcaaaaaggtgaacctggtgtaggtctgccgggc
cagaagggactgccaggtcccccaggagtgcctggcttccctggagaaaagggaaatccg
ggacttcctggcttacgtggagagcaaggctttccaggcatacctggacagcaaggattc
agaggtgaccctggtctcccagggctgcaaggcttgcagggccctccaggcgcaccaggg
ctgggaccgcagggaacaccgggaccccctgggcagccaggaccacagggaccaccagga
tttccgggaataaaaggagaaaagggcttccctggtgtcccaggtctagatatgccagga
ccaaaaggggataaaggtagccagggccagcctggagtaccaggatctgtggggttacca
ggcctgccaggtgcacaaggggctgttggactgaaaggatcatcaggagctaaaggagaa
atgggagttatgggaactcctggattgccaggaagtcctggaccagttggcgatcgaggg
ttgccaggtgaaaaaggtagccaaggtttcaaaggtatagttggacctcaaggtgatcct
ggtgtcaaaggagataaaggtgaagctggtctcccaggaaaacctggaactatggacaac
atggatatggtcagtctcaaaggccagaagggagatcaaggagaaaaaggggaccatgga
gcaacaggagaaaaagggttacctggggaatatggagaaccaggaattccagggaaggat
ggtgaacctggtactccaggacatccaggaccaaaaggtgatcagggccctccagggtac
ccaggagatccaggaattccaggacaaaaaggatcagttggtgaaatgggtttgccagga
acacctggagaaaagggtctgccaggagtaccaggttcaccaggcacacctgggttcccg
gggcaaaaaggtgaaaaaggagacaaaggagcgccaggttttcctggaattggctttcca
ggctctcctggtcagaagggagaaccaggaagaacgggtattccaggtgtacctggagat
aagggtgaaaagggtaccgcaggaattcctggaatgccaggtgccccaggtcccaaagga
tcccctggcatggcaggatttccaggcaaccctggtcgccatggagaaaagggtgaaaaa
ggacttcctggcttaagtggcattccaggttcaaaaggagaaccaggtgaacctggcgtt
ccgggtcctgctggttccattgggcagaagggtgaaccgggttatgatgggattccaggt
gcagctggtgcaaagggtgaacaaggtattccaggtagaggacttccaggatttcccggt
gcaaagggagataaaggtgcaaaaggtgaagtgggtttcccaggatccccaggaagcgcg
gggatcccaggcccaaaaggagaaccaggatatcctggtccagcaggacctaagggtagc
caaggtcttcctggactaccgggcagtgcaattgagggccctaaaggagacagaggaccc
caaggccaacctggccttccaggtttaccaggtccaacagggccaccaggacccccaggt
gtgaaaggggccaaaggagagcagggcagcattggctggccggggactcctggaggtcca
ggagtcaaaggtgatccaggtttccagggagtgccaggtagtcctggtttaccaggagat
attggtcaaaagggtgatctgggacctccaggagttccaggcattccaggtccaaaagga
attgcaggcttcccaggcctcaagggtgagcgaggtgaccaaggtcttcctggatctaaa
ggtttacaaggcccaccaggcccaccaggtgcttttcagcttgttaaaggggatcccggc
ttacctggccctgtaggaccagttggtctcaaaggatttccaggacttccaggtcctaaa
ggacagcaaggggtgacaggacctccaggtgtgcctggaccacctggtagtccaggattt
gatggtaaacctggacaaaaaggagaagttggtccttatggtcccccagggcccagagga
tttcctggtccacctggccctgaaggtttgcctggggctatgggcccaccaggtgcacca
tctgttgctcatggcttccttgttaccagacatagtcaaaccactgaagaaccgtcatgt
ccatttggaacaaggctgatttaccatggctactccttgctttatgtacaaggcaatgaa
agagcacatggccaagatctgggcacggcaggaagctgtcttcgtaaatttagtaccatg
cctttcttattctgcaacatcaacaacgtctgtaactttgcatcaaggaatgactactcc
tactggttgtccactcccgaacccatgccaatgagtatggctcctatcactggtgataat
atcagaccattcatcagcagatgctctgtgtgtgaagctcctgctatggtaatagccgta
cacagtcaaacaattcaaataccatcgtgtcctgaaggctggagttcactttggattggt
tactcctttgtcatgcacaccagcgctggtgcggagggctctggccaggccctggcgtct
cctggttcctgcctagaagagtttcgcagcgctcccttcattgaatgccatggccggggc
acctgcaattattatgcaaatgcttacagcttctggcttgccactatagagaggaatgag
atgttcaagaaaccaactccctcgactttgaaagcaggagatctgcgctcaaatgttagc
cgttgtcaagtctgtatgagaaaaacataa
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integrated database retrieval system
