Cuculus canorus (common cuckoo): 104055019
Help
Entry
104055019 CDS
T08597
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca04382
Cornified envelope formation
cuca04510
Focal adhesion
cuca04512
ECM-receptor interaction
cuca04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104055019 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104055019 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104055019 (COL4A1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
104055019 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cuca04147
]
104055019 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
cuca00536
]
104055019 (COL4A1)
Exosome [BR:
cuca04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
104055019 (COL4A1)
Glycosaminoglycan binding proteins [BR:
cuca00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104055019 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
104055019
NCBI-ProteinID:
XP_053932423
LinkDB
All DBs
Position
1:complement(2601033..2740245)
Genome browser
AA seq
1669 aa
AA seq
DB search
MRLWLGLGLLLSAELSAVSAAGCSGCGKCDCSGVKGQKGERGLPGLQGVIGFPGMQGPEG
PPGSPGLKGDTGEPGLPGTKGTRGPPGASGFPGNPGLPGIPGQDGPPGPPGIPGCNGTKG
ERGPVGPPGLPGLTGSIGPPGPPGMKGDPGEVIGLLPPSLLKGDKGFPGQPGLPGPPGTP
GFQGVMGPQGPPGEPGPPGPPGLPGEKGYMGLGFQGPKGEKGEQGVRGPPGPPGPAPHMK
EKGSEIIKGEKGDPGEKGEQGFPGLPGSGFKGEKGEPGKPGPRGKPGKDGEPGPKGEAGL
PGGSGIPGRPGEPGAKGDKGERGFPGPPGRVIDAGPIDTFGEKGEPGASGLPGLKGQKGE
KGFPGVQGIPGPPGRPIPDRVGSPGVPGQRGEKGEKGSPGFPLPGPPGRDGFPGPPGLPG
PPGPPGKTDGIDQCQQGEPGSPGIPGPPGRDGFPGEMGEKGDKGESCALCDKEGPPGLPG
PQGPPGPAGFPGQAGFKGDRGLPGLDGIPGVPGPPGTPGLIGSPGAKGEPGDFTYDSILK
GEKGDPGLPGQPGIPGREGRPGKDGLPGLQGPKGTPGTAGLKGDRGPPGQPGFPGVRGER
GFPGPPGIGVPGLPGDKGDRGFAGTPGLPGLPGTKGEAGRTVPLPGPPGADGLPGPPGFP
GPQGDKGNPGLPGRPGLPGEKGAVGQPGIGFPGPPGPKGFPGQPGAPGLPGTPGTPGLDG
LPGVPGLQGQKGEPGVGLPGQKGLPGPPGVPGFPGEKGNPGLPGLRGEQGFPGIPGQQGF
RGDPGLPGLQGLQGPPGAPGLGPQGTPGPPGQPGPQGPPGFPGIKGEKGFPGVPGLDMPG
PKGDKGSQGQPGVPGSVGLPGLPGAQGAVGLKGSSGAKGEMGVMGTPGLPGSPGPVGDRG
LPGEKGSQGFKGIVGPQGDPGVKGDKGEAGLPGKPGTMDNMDMVSLKGQKGDQGEKGDHG
ATGEKGLPGEYGEPGIPGKDGEPGTPGHPGPKGDQGPPGYPGDPGIPGQKGSVGEMGLPG
TPGEKGLPGVPGSPGTPGFPGQKGEKGDKGAPGFPGIGFPGSPGQKGEPGRTGIPGVPGD
KGEKGTAGIPGMPGAPGPKGSPGMAGFPGNPGRHGEKGEKGLPGLSGIPGSKGEPGEPGV
PGPAGSIGQKGEPGYDGIPGAAGAKGEQGIPGRGLPGFPGAKGDKGAKGEVGFPGSPGSA
GIPGPKGEPGYPGPAGPKGSQGLPGLPGSAIEGPKGDRGPQGQPGLPGLPGPTGPPGPPG
VKGAKGEQGSIGWPGTPGGPGVKGDPGFQGVPGSPGLPGDIGQKGDLGPPGVPGIPGPKG
IAGFPGLKGERGDQGLPGSKGLQGPPGPPGAFQLVKGDPGLPGPVGPVGLKGFPGLPGPK
GQQGVTGPPGVPGPPGSPGFDGKPGQKGEVGPYGPPGPRGFPGPPGPEGLPGAMGPPGAP
SVAHGFLVTRHSQTTEEPSCPFGTRLIYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTM
PFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGDNIRPFISRCSVCEAPAMVIAV
HSQTIQIPSCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG
TCNYYANAYSFWLATIERNEMFKKPTPSTLKAGDLRSNVSRCQVCMRKT
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgaggctctggctgggcttggggctgctgctgagcgccgagctcagcgccgtgtcagcc
gcgggatgttccggttgtggaaaatgtgactgcagtggagtaaaagggcaaaagggagaa
agaggcttgccgggactacagggtgtgattgggtttcctggaatgcaaggacctgaaggt
ccccctgggtcaccagggcttaagggtgatactggagaaccaggactgccaggaacaaaa
ggaacaagaggacccccaggagcttcaggctttccaggaaacccaggccttcctggcatt
cctggacaagatggccctcctggcccacctggcattccaggatgcaatggcactaaggga
gaaagaggtccagtaggtcccccaggtttaccaggactgactggtagcataggaccccca
ggacctcctggaatgaagggagatccaggtgaagtgattggtcttttacctcctagtttg
ctaaaaggtgataaaggctttcctggtcaacctggactacctggcccacctggaactcca
gggtttcagggagtaatggggccacaaggacctccaggagaaccaggtcccccagggcca
ccaggactcccaggcgagaagggctacatgggcttgggttttcagggtcccaaaggtgaa
aagggagaacaaggggtaaggggacccccgggaccaccaggaccagcaccacatatgaaa
gaaaaagggagtgagatcataaaaggagaaaagggtgatccaggtgaaaagggtgaacag
ggattcccaggattgccaggttcaggtttcaaaggagaaaagggtgaacctgggaagcct
ggtccacgtggaaagcctggaaaagatggcgaaccaggaccaaaaggagaagccggtttg
cctggtgggtctggaattccaggacgacctggggagcctggtgcaaagggtgacaaaggt
gaacgaggttttccaggacctccaggaagggttatagatgctggaccaattgataccttc
ggtgaaaaaggagagcctggagcttcaggtttgcctgggctgaaaggtcaaaaaggtgaa
aaaggtttccctggtgtacaaggaatccctggacctccaggtcgaccaattccagacaga
gtaggatcacctggtgtccctggacagagaggtgaaaagggtgaaaagggttcaccagga
ttccctttacctggaccccctggaagagatggtttcccaggtcctccggggttgcctggc
ccaccaggtcctccagggaaaaccgacggaattgaccaatgccaacagggagaacctggt
tcaccaggtattcctgggcctccgggaagagatggatttccaggagagatgggagagaaa
ggtgacaaaggtgaatcctgtgccttatgtgataaagagggacctcctggacttccagga
ccacaagggccaccaggtccagcaggttttccaggacaagcaggtttcaagggtgacaga
ggcctacctggacttgatggcattccaggggtacctgggccccccggcactccaggactt
attggcagccctggggcaaaaggagaaccaggagattttacttatgattctatcctgaaa
ggtgaaaaaggagatcctggtttaccaggacaaccaggtattcctggaagggaaggaaga
ccaggaaaagatggattgccaggtctccagggcccgaaaggaacaccgggtactgctggc
ttgaaaggagatcgtggtccacctggccaacctggattccctggagtacgtggtgaaaga
ggttttcctggccctcctgggataggcgttccagggttacctggtgacaaaggagacaga
ggctttgctggaaccccaggtttaccaggccttccaggaacaaagggtgaagcaggacga
actgtaccacttcctggacctcctggggcagatggccttcctgggccacctggtttccct
ggaccccaaggtgacaaagggaatcctgggcttccaggtagacctggtctgccaggagaa
aaaggtgctgttggacagccaggtataggattccctggacctccagggcccaaaggtttc
ccaggtcagcctggcgctcctggtctgccggggactccaggaacccctggcctggatggt
ttgccaggtgtaccaggattacaaggtcaaaaaggtgaacctggtgtaggtctgccgggc
cagaagggactgccaggtcccccaggagtgcctggcttccctggagaaaagggaaatccg
ggacttcctggcttacgtggagagcaaggctttccaggcatacctggacagcaaggattc
agaggtgaccctggtctcccagggctgcaaggcttgcagggccctccaggcgcaccaggg
ctgggaccgcagggaacaccgggaccccctgggcagccaggaccacagggaccaccagga
tttccgggaataaaaggagaaaagggcttccctggtgtcccaggtctagatatgccagga
ccaaaaggggataaaggtagccagggccagcctggagtaccaggatctgtggggttacca
ggcctgccaggtgcacaaggggctgttggactgaaaggatcatcaggagctaaaggagaa
atgggagttatgggaactcctggattgccaggaagtcctggaccagttggcgatcgaggg
ttgccaggtgaaaaaggtagccaaggtttcaaaggtatagttggacctcaaggtgatcct
ggtgtcaaaggagataaaggtgaagctggtctcccaggaaaacctggaactatggacaac
atggatatggtcagtctcaaaggccagaagggagatcaaggagaaaaaggggaccatgga
gcaacaggagaaaaagggttacctggggaatatggagaaccaggaattccagggaaggat
ggtgaacctggtactccaggacatccaggaccaaaaggtgatcagggccctccagggtac
ccaggagatccaggaattccaggacaaaaaggatcagttggtgaaatgggtttgccagga
acacctggagaaaagggtctgccaggagtaccaggttcaccaggcacacctgggttcccg
gggcaaaaaggtgaaaaaggagacaaaggagcgccaggttttcctggaattggctttcca
ggctctcctggtcagaagggagaaccaggaagaacgggtattccaggtgtacctggagat
aagggtgaaaagggtaccgcaggaattcctggaatgccaggtgccccaggtcccaaagga
tcccctggcatggcaggatttccaggcaaccctggtcgccatggagaaaagggtgaaaaa
ggacttcctggcttaagtggcattccaggttcaaaaggagaaccaggtgaacctggcgtt
ccgggtcctgctggttccattgggcagaagggtgaaccgggttatgatgggattccaggt
gcagctggtgcaaagggtgaacaaggtattccaggtagaggacttccaggatttcccggt
gcaaagggagataaaggtgcaaaaggtgaagtgggtttcccaggatccccaggaagcgcg
gggatcccaggcccaaaaggagaaccaggatatcctggtccagcaggacctaagggtagc
caaggtcttcctggactaccgggcagtgcaattgagggccctaaaggagacagaggaccc
caaggccaacctggccttccaggtttaccaggtccaacagggccaccaggacccccaggt
gtgaaaggggccaaaggagagcagggcagcattggctggccggggactcctggaggtcca
ggagtcaaaggtgatccaggtttccagggagtgccaggtagtcctggtttaccaggagat
attggtcaaaagggtgatctgggacctccaggagttccaggcattccaggtccaaaagga
attgcaggcttcccaggcctcaagggtgagcgaggtgaccaaggtcttcctggatctaaa
ggtttacaaggcccaccaggcccaccaggtgcttttcagcttgttaaaggggatcccggc
ttacctggccctgtaggaccagttggtctcaaaggatttccaggacttccaggtcctaaa
ggacagcaaggggtgacaggacctccaggtgtgcctggaccacctggtagtccaggattt
gatggtaaacctggacaaaaaggagaagttggtccttatggtcccccagggcccagagga
tttcctggtccacctggccctgaaggtttgcctggggctatgggcccaccaggtgcacca
tctgttgctcatggcttccttgttaccagacatagtcaaaccactgaagaaccgtcatgt
ccatttggaacaaggctgatttaccatggctactccttgctttatgtacaaggcaatgaa
agagcacatggccaagatctgggcacggcaggaagctgtcttcgtaaatttagtaccatg
cctttcttattctgcaacatcaacaacgtctgtaactttgcatcaaggaatgactactcc
tactggttgtccactcccgaacccatgccaatgagtatggctcctatcactggtgataat
atcagaccattcatcagcagatgctctgtgtgtgaagctcctgctatggtaatagccgta
cacagtcaaacaattcaaataccatcgtgtcctgaaggctggagttcactttggattggt
tactcctttgtcatgcacaccagcgctggtgcggagggctctggccaggccctggcgtct
cctggttcctgcctagaagagtttcgcagcgctcccttcattgaatgccatggccggggc
acctgcaattattatgcaaatgcttacagcttctggcttgccactatagagaggaatgag
atgttcaagaaaccaactccctcgactttgaaagcaggagatctgcgctcaaatgttagc
cgttgtcaagtctgtatgagaaaaacataa
DBGET
integrated database retrieval system
