Cuculus canorus (common cuckoo): 104055030
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Entry
104055030 CDS
T08597
Symbol
COL4A2
Name
(RefSeq) collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca04382
Cornified envelope formation
cuca04510
Focal adhesion
cuca04512
ECM-receptor interaction
cuca04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104055030 (COL4A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104055030 (COL4A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104055030 (COL4A2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
104055030 (COL4A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cuca04147
]
104055030 (COL4A2)
00536 Glycosaminoglycan binding proteins [BR:
cuca00536
]
104055030 (COL4A2)
Exosome [BR:
cuca04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
104055030 (COL4A2)
Glycosaminoglycan binding proteins [BR:
cuca00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104055030 (COL4A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
104055030
NCBI-ProteinID:
XP_053932403
LinkDB
All DBs
Position
1:2739297..2897527
Genome browser
AA seq
1715 aa
AA seq
DB search
MDISQLPSARIFVCQNPGLLLILMEVALSAVKVDAGGKTYTGPCGGRDCSGGCQCFPEKG
SRGQPGLLGIQGFTGPPGLMGIPGVQGPKGHKGERGHPGISGPKGEVGQRGVTGFPGADG
IPGHPGQPGSRGKPGHDGCNGTVGDPGDPGIPGVFGFPGTIGIQGPKGQKGEPYILPPDI
ASRYRGEPGDPGFNGFPGPPGTLGIQGPVGPRGERGRPGPPGPPGPQGPQGNRGLGFYGE
KGEQGAPGPPGPPGLPTRELMGVPSDKHKGERGEPGPRGEAGIPGVLLYAPEKGEEGVIG
YPGQRGLPGINGFPGLTGERGFPGFDGPPGAYGPRGSKGESGDVGPPGPVSYFPSRIPRK
GARGDPGLPGVSGLQGDPGEEGDRGLPGLPGFSDADGDKPGLPGEMGPKGEKGELGSPSY
QAGPPGFPGKHGAPGLRGPPGPVGAPGSLFGLKGLEGAPGRFGVQGFPGQRGLKGPKGEE
GDCSKCLLGEELRRGSTGPPGPPGFPGTPGQPGRKGEPGDQGPHGNPGYPGAKGFSGQDG
FPGPKGEKGDSFHITTKGTKGIRGDPGLPGIRGADGFPGRDGLDGSPGQPGLPGDGIRGF
PGDPGFPGELGPKGFPGEAGLPGEGFPGPKGYRGFPGDHGQDGSPGPPGLPGPPGDPGQL
DCGQVVEDFSRGDGTEPIWSGAGCVRPPKGSQGRPGLPGATGAKGARGFPGDPGPMGYPG
LNGTRGDPGREGLPGPPGFTGPRGDRGPNGLPGLQGHPGLTGKSGAPGAAGLKGLPGEVL
EAATGPPGDAGLPGFPGLKGLPGDQGVPGIRGMDGNPGLPGSKGHPGPQGLPGLMGLPGT
PGTRGFPGMPGNPGPEGRLGSQGPDGPPGARGEDGEQGFPGPVGLKGLSGDKGETGFPGL
PGLPGVSGPPGIRGMDGFPGDKGSRGSPGVDGFKGMTGLKGRPGIKGLKGEFGSYGAQGD
KGAQGARGFKGDRGDQGPPGEPPKIKPSMMMEVKGEKGDAGERGSKGFFGTKGSKGMPGI
PGKTGTPGSPGHPSYVAGVKGDVGAKGVTGLKGYPGPAGSPGIRGFPGSTGIRGEKGIPG
ISGQFGTPGSHGEIGERGETMDLPGMPGLKGEVGVPGLTGTRGGAGQKGEGGDPGFPGIE
GLKGTQGVPGSVGQEGLPGLVGAPGQQGSPGEPGFQGEKGTPGWPGLPGRPGSPGLRGIS
GLHGLPGTKGLPGSPGPDGYGSAGFPGSVGDKGEAGEPSRVEGSQGPPGQKGDRGVPGLP
GPFGIPGQEGFPGPPGISNISGYPGDKGSPGLDGVPGYPGLQGQPGIPAPPGSKGESGQT
GVSGEIGPKGSRGDPGLAGRSGVPGYPGPKGRKGEQGVIGFMGPVGLPGDLGPIGPKGDR
GVTGFQGPPGSPGLPPLPPRLVAEQGSPGPRGNIGPQGSPGDTGSQGPPGDPGFRGSPGG
AGLQGRGGIPAPPGSRGEQGATGFQGPVGFEGQPGRPGSPGLPGMPGRSVNMGYLLVKHS
QSEQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLTRFSTMPFLYCNPGDICY
YANRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAMAIAVHSQEASIPRCPEGW
RSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWL
TTIDQPFQSKPSADTLKAGLIRSHISRCQVCMKNL
NT seq
5148 nt
NT seq
+upstream
nt +downstream
nt
atggatatctcgcagcttcccagcgcacgtatttttgtttgtcagaatccggggcttctg
ctgatcctgatggaagtcgcactgtcagccgtcaaagtggatgctggtggaaagacttac
acgggaccatgtggaggcagagactgcagtggaggatgtcagtgtttccctgaaaaagga
agccgtggccagccaggacttcttggaatacagggtttcaccggaccaccaggattgatg
ggaatcccgggagtacaaggtcccaaaggtcacaaaggtgaaagaggacatccaggaata
agtggacccaaaggagaagtggggcaaagaggagtcactgggtttcctggggcagatggc
attcctggtcatccagggcagccaggatcaagggggaaaccaggtcacgatggctgtaac
gggacagtaggtgaccctggtgacccaggaattcccggagtttttggtttccctggtacc
attggaatccaaggaccgaagggacagaaaggggagccctatatactaccaccagacatc
gcaagccgatacaggggggaacctggggatccagggttcaatggttttccaggacctcca
ggtacactgggtattcaaggacctgttggtccaagaggagagcgaggaagaccaggacca
ccagggcctccaggaccacaaggaccgcaaggcaacaggggccttggcttctatggagaa
aaaggtgaacagggtgccccgggtcctccaggtccacctgggcttcctacaagagaactg
atgggtgtcccctctgacaaacacaagggtgagagaggagaacctggaccaagaggtgaa
gctggaattccaggcgttcttctctatgctcctgaaaaaggtgaagaaggggtaataggc
tacccaggacaaaggggactgcctggaatcaatggttttcctggactcactggagaaaga
gggtttccaggatttgatggtccaccaggtgcctatggtcctagaggaagcaagggggag
tcaggcgacgtcggtcctccaggaccagtttcctattttccttcccgcatcccaaggaaa
ggtgcaagaggtgatccaggccttccaggtgtttctggactacagggtgatccaggagag
gagggagatcgtgggctgcctggtcttcctggattctctgatgcggatggtgataagcca
ggcttaccgggagaaatgggaccaaaaggtgaaaaaggtgaattaggatctccctcttac
caggcgggcccacctgggtttccgggtaagcacggcgcaccaggacttcgtggtccacct
ggtcctgttggagcccctggttcactctttggattaaaaggactggaaggggcaccaggt
agatttggcgtgcaaggtttccctgggcaaagaggactaaaaggacctaaaggtgaagaa
ggggattgcagtaaatgccttttgggtgaagaactcagaaggggctctactggccctcct
ggtcctcctggctttccaggaacccctggccagcctgggaggaaaggagaacctggtgat
caaggaccacatggtaatcctggctaccctggagcaaaagggttttcgggtcaagatgga
tttcctggaccaaaaggagaaaagggagattctttccacataacaactaaaggcaccaaa
ggaatccgaggagatcctggactgcctggtatcagaggtgcagatggtttcccaggcaga
gatggattagatggttcaccaggacagcctggactgccaggtgatggtatccgaggtttc
cctggtgatcctggttttccaggtgaattaggtccaaagggctttccaggagaagcaggc
ctgccaggtgaaggatttcctggtccaaaagggtaccggggttttccaggtgaccatgga
caagatggaagccctggacctccaggtcttcccggtccaccaggagaccctggccaacta
gactgtgggcaagttgttgaagacttttctagaggagacggaaccgagccaatatggtca
ggcgcaggctgtgtgaggccaccaaaaggatctcaaggcaggccaggactaccaggagcc
acgggtgcaaaaggtgcaagaggattcccaggtgatccaggtccaatgggatacccaggg
ctaaatggtacacgaggtgatccaggtcgggaaggattgccaggtcctccaggttttacg
gggcccaggggagacagaggcccgaacggtttacctggactgcagggacacccaggcctc
acaggaaaatccggtgctccgggagcagcagggctgaagggccttcctggtgaagtttta
gaagcagcaacaggtcctccaggagatgccgggctccctggcttcccagggttgaaaggc
ttgccaggagatcaaggagtaccaggaattagaggaatggatggtaatccaggtttgcca
ggatccaaaggacatccggggccacaaggtctccctggtttgatgggattgccaggaaca
ccaggaacacgtggattcccagggatgccaggaaaccctgggccagaaggcaggcttggc
tcgcaaggacctgatggtccacctggtgctaggggagaagatggtgaacaaggatttcct
ggccccgtgggcctaaaaggtctgtctggtgacaaaggtgaaacaggtttcccaggatta
ccgggtctacctggtgtgtctggtccccctggaataagaggaatggatggctttccagga
gataaaggctcaagaggttcacctggtgttgatggtttcaaaggcatgacaggcctaaaa
ggaagaccaggcatcaagggactcaaaggagaatttggctcatatggagctcagggtgat
aaaggcgcacaaggcgcacgcggctttaaaggtgaccgtggggatcaaggccccccagga
gagcccccaaagatcaagcccagcatgatgatggaagttaaaggtgaaaaaggcgatgct
ggagaaaggggctcaaagggattctttggcacaaaaggtagcaagggaatgccgggcatt
cctggaaagacaggaactccaggttcccctgggcatcccagctatgtggccggcgtgaaa
ggggacgtcggcgcaaaaggagtaacaggtctgaaagggtatcctggtccagctggctct
cctggcatcagaggctttcctggcagcacaggaatcagaggagaaaaaggtattccagga
atttcaggccaatttggtactcctggctcacatggtgaaataggtgagcggggagaaact
atggacttaccaggaatgccaggtcttaaaggcgaagttggtgtgccaggcttaacaggt
acaagaggaggtgcagggcaaaaaggcgaaggtggtgatcctggttttcctggtattgaa
ggcctcaagggcacacagggtgtccctggttctgtgggacaagaaggtttgccaggactg
gtaggtgcccctgggcagcaaggaagccccggagagccaggatttcaaggtgaaaaggga
actccgggctggcctggcttaccaggacgaccaggctcacctggcttaagaggaatcagt
ggactgcatggtttaccaggcactaagggcttaccaggatcaccaggtccagatggctac
ggctctgcaggtttcccaggttcagtgggtgacaaaggagaagcaggagagccaagcaga
gtggaaggcagccaaggacctccgggtcagaagggagacagaggtgttccaggactccca
ggaccctttggcattcctgggcaggaaggatttccagggcctcctgggatttcaaatata
tcaggatatcccggtgataaaggctccccaggtctagacggagtgccaggctacccagga
ctacaagggcagcctggaataccggctccaccaggaagcaaaggagaaagtggacaaaca
ggtgtgagtggagaaattggtccaaaaggaagtagaggcgatcctggattagcagggaga
tctggcgttcctgggtaccctggaccaaaaggtcgtaagggtgaacaaggtgtcatcggc
tttatgggcccagtaggattgccaggtgatttgggacccatcggacccaagggggataga
ggagtaactgggtttcagggccctccaggctctcctgggctgccccctcttcctccaagg
ctggttgctgagcaaggttcaccaggtccccgtggaaatataggacctcaaggaagccca
ggagatacaggatctcagggtccaccaggcgatccaggtttcagaggctcacctggaggg
gcaggacttcaaggcaggggtggcatcccagctcctcccggctccagaggtgaacaagga
gcaacagggtttcagggtccagtgggatttgaaggtcagccaggccgccctggtagcccc
gggctaccaggcatgccgggtcgcagtgttaacatgggctacttgctggtgaagcacagc
cagtctgagcaagagccaatgtgtccagttggcatgaacaaactctggagtggatacagt
ctactttactttgaaggacaagagaaagcacacaaccaggacctagggctggccggctca
tgtttgactcgttttagtactatgccattcctctactgtaaccctggggatatttgttat
tatgccaatcgaaatgataaatcctactggctttcaactacagcacctcttccaatgatg
cctgtggcagaagaagacattaggccatatatcagtcgctgctcggtttgtgaggcccca
gctatggcaattgctgtccatagccaagaagcttctattcctcgctgccctgaaggctgg
cgcagtttgtggatcggatattccttccttatgcacactgctgctggtgatgaaggtgga
ggacaatcactggtttctcctgggagctgcttggaagatttcagagcgactcctttcatt
gaatgcaacggcgcacgcggaacctgtcactactttgcaaataaatacagcttctggctc
actacaattgaccagcccttccaaagcaagccctcagcagatacactcaaggcaggactc
atccgaagccatatcagcagatgtcaagtctgtatgaagaatttatag
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integrated database retrieval system
