Cuculus canorus (common cuckoo): 104055030
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Entry
104055030 CDS
T08597
Symbol
COL4A2
Name
(RefSeq) collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca04510
Focal adhesion
cuca04512
ECM-receptor interaction
cuca04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104055030 (COL4A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104055030 (COL4A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104055030 (COL4A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cuca04147
]
104055030 (COL4A2)
00536 Glycosaminoglycan binding proteins [BR:
cuca00536
]
104055030 (COL4A2)
Exosome [BR:
cuca04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
104055030 (COL4A2)
Glycosaminoglycan binding proteins [BR:
cuca00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104055030 (COL4A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
104055030
NCBI-ProteinID:
XP_053932403
LinkDB
All DBs
Position
1:2739297..2897527
Genome browser
AA seq
1715 aa
AA seq
DB search
MDISQLPSARIFVCQNPGLLLILMEVALSAVKVDAGGKTYTGPCGGRDCSGGCQCFPEKG
SRGQPGLLGIQGFTGPPGLMGIPGVQGPKGHKGERGHPGISGPKGEVGQRGVTGFPGADG
IPGHPGQPGSRGKPGHDGCNGTVGDPGDPGIPGVFGFPGTIGIQGPKGQKGEPYILPPDI
ASRYRGEPGDPGFNGFPGPPGTLGIQGPVGPRGERGRPGPPGPPGPQGPQGNRGLGFYGE
KGEQGAPGPPGPPGLPTRELMGVPSDKHKGERGEPGPRGEAGIPGVLLYAPEKGEEGVIG
YPGQRGLPGINGFPGLTGERGFPGFDGPPGAYGPRGSKGESGDVGPPGPVSYFPSRIPRK
GARGDPGLPGVSGLQGDPGEEGDRGLPGLPGFSDADGDKPGLPGEMGPKGEKGELGSPSY
QAGPPGFPGKHGAPGLRGPPGPVGAPGSLFGLKGLEGAPGRFGVQGFPGQRGLKGPKGEE
GDCSKCLLGEELRRGSTGPPGPPGFPGTPGQPGRKGEPGDQGPHGNPGYPGAKGFSGQDG
FPGPKGEKGDSFHITTKGTKGIRGDPGLPGIRGADGFPGRDGLDGSPGQPGLPGDGIRGF
PGDPGFPGELGPKGFPGEAGLPGEGFPGPKGYRGFPGDHGQDGSPGPPGLPGPPGDPGQL
DCGQVVEDFSRGDGTEPIWSGAGCVRPPKGSQGRPGLPGATGAKGARGFPGDPGPMGYPG
LNGTRGDPGREGLPGPPGFTGPRGDRGPNGLPGLQGHPGLTGKSGAPGAAGLKGLPGEVL
EAATGPPGDAGLPGFPGLKGLPGDQGVPGIRGMDGNPGLPGSKGHPGPQGLPGLMGLPGT
PGTRGFPGMPGNPGPEGRLGSQGPDGPPGARGEDGEQGFPGPVGLKGLSGDKGETGFPGL
PGLPGVSGPPGIRGMDGFPGDKGSRGSPGVDGFKGMTGLKGRPGIKGLKGEFGSYGAQGD
KGAQGARGFKGDRGDQGPPGEPPKIKPSMMMEVKGEKGDAGERGSKGFFGTKGSKGMPGI
PGKTGTPGSPGHPSYVAGVKGDVGAKGVTGLKGYPGPAGSPGIRGFPGSTGIRGEKGIPG
ISGQFGTPGSHGEIGERGETMDLPGMPGLKGEVGVPGLTGTRGGAGQKGEGGDPGFPGIE
GLKGTQGVPGSVGQEGLPGLVGAPGQQGSPGEPGFQGEKGTPGWPGLPGRPGSPGLRGIS
GLHGLPGTKGLPGSPGPDGYGSAGFPGSVGDKGEAGEPSRVEGSQGPPGQKGDRGVPGLP
GPFGIPGQEGFPGPPGISNISGYPGDKGSPGLDGVPGYPGLQGQPGIPAPPGSKGESGQT
GVSGEIGPKGSRGDPGLAGRSGVPGYPGPKGRKGEQGVIGFMGPVGLPGDLGPIGPKGDR
GVTGFQGPPGSPGLPPLPPRLVAEQGSPGPRGNIGPQGSPGDTGSQGPPGDPGFRGSPGG
AGLQGRGGIPAPPGSRGEQGATGFQGPVGFEGQPGRPGSPGLPGMPGRSVNMGYLLVKHS
QSEQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLTRFSTMPFLYCNPGDICY
YANRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAMAIAVHSQEASIPRCPEGW
RSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWL
TTIDQPFQSKPSADTLKAGLIRSHISRCQVCMKNL
NT seq
5148 nt
NT seq
+upstream
nt +downstream
nt
atggatatctcgcagcttcccagcgcacgtatttttgtttgtcagaatccggggcttctg
ctgatcctgatggaagtcgcactgtcagccgtcaaagtggatgctggtggaaagacttac
acgggaccatgtggaggcagagactgcagtggaggatgtcagtgtttccctgaaaaagga
agccgtggccagccaggacttcttggaatacagggtttcaccggaccaccaggattgatg
ggaatcccgggagtacaaggtcccaaaggtcacaaaggtgaaagaggacatccaggaata
agtggacccaaaggagaagtggggcaaagaggagtcactgggtttcctggggcagatggc
attcctggtcatccagggcagccaggatcaagggggaaaccaggtcacgatggctgtaac
gggacagtaggtgaccctggtgacccaggaattcccggagtttttggtttccctggtacc
attggaatccaaggaccgaagggacagaaaggggagccctatatactaccaccagacatc
gcaagccgatacaggggggaacctggggatccagggttcaatggttttccaggacctcca
ggtacactgggtattcaaggacctgttggtccaagaggagagcgaggaagaccaggacca
ccagggcctccaggaccacaaggaccgcaaggcaacaggggccttggcttctatggagaa
aaaggtgaacagggtgccccgggtcctccaggtccacctgggcttcctacaagagaactg
atgggtgtcccctctgacaaacacaagggtgagagaggagaacctggaccaagaggtgaa
gctggaattccaggcgttcttctctatgctcctgaaaaaggtgaagaaggggtaataggc
tacccaggacaaaggggactgcctggaatcaatggttttcctggactcactggagaaaga
gggtttccaggatttgatggtccaccaggtgcctatggtcctagaggaagcaagggggag
tcaggcgacgtcggtcctccaggaccagtttcctattttccttcccgcatcccaaggaaa
ggtgcaagaggtgatccaggccttccaggtgtttctggactacagggtgatccaggagag
gagggagatcgtgggctgcctggtcttcctggattctctgatgcggatggtgataagcca
ggcttaccgggagaaatgggaccaaaaggtgaaaaaggtgaattaggatctccctcttac
caggcgggcccacctgggtttccgggtaagcacggcgcaccaggacttcgtggtccacct
ggtcctgttggagcccctggttcactctttggattaaaaggactggaaggggcaccaggt
agatttggcgtgcaaggtttccctgggcaaagaggactaaaaggacctaaaggtgaagaa
ggggattgcagtaaatgccttttgggtgaagaactcagaaggggctctactggccctcct
ggtcctcctggctttccaggaacccctggccagcctgggaggaaaggagaacctggtgat
caaggaccacatggtaatcctggctaccctggagcaaaagggttttcgggtcaagatgga
tttcctggaccaaaaggagaaaagggagattctttccacataacaactaaaggcaccaaa
ggaatccgaggagatcctggactgcctggtatcagaggtgcagatggtttcccaggcaga
gatggattagatggttcaccaggacagcctggactgccaggtgatggtatccgaggtttc
cctggtgatcctggttttccaggtgaattaggtccaaagggctttccaggagaagcaggc
ctgccaggtgaaggatttcctggtccaaaagggtaccggggttttccaggtgaccatgga
caagatggaagccctggacctccaggtcttcccggtccaccaggagaccctggccaacta
gactgtgggcaagttgttgaagacttttctagaggagacggaaccgagccaatatggtca
ggcgcaggctgtgtgaggccaccaaaaggatctcaaggcaggccaggactaccaggagcc
acgggtgcaaaaggtgcaagaggattcccaggtgatccaggtccaatgggatacccaggg
ctaaatggtacacgaggtgatccaggtcgggaaggattgccaggtcctccaggttttacg
gggcccaggggagacagaggcccgaacggtttacctggactgcagggacacccaggcctc
acaggaaaatccggtgctccgggagcagcagggctgaagggccttcctggtgaagtttta
gaagcagcaacaggtcctccaggagatgccgggctccctggcttcccagggttgaaaggc
ttgccaggagatcaaggagtaccaggaattagaggaatggatggtaatccaggtttgcca
ggatccaaaggacatccggggccacaaggtctccctggtttgatgggattgccaggaaca
ccaggaacacgtggattcccagggatgccaggaaaccctgggccagaaggcaggcttggc
tcgcaaggacctgatggtccacctggtgctaggggagaagatggtgaacaaggatttcct
ggccccgtgggcctaaaaggtctgtctggtgacaaaggtgaaacaggtttcccaggatta
ccgggtctacctggtgtgtctggtccccctggaataagaggaatggatggctttccagga
gataaaggctcaagaggttcacctggtgttgatggtttcaaaggcatgacaggcctaaaa
ggaagaccaggcatcaagggactcaaaggagaatttggctcatatggagctcagggtgat
aaaggcgcacaaggcgcacgcggctttaaaggtgaccgtggggatcaaggccccccagga
gagcccccaaagatcaagcccagcatgatgatggaagttaaaggtgaaaaaggcgatgct
ggagaaaggggctcaaagggattctttggcacaaaaggtagcaagggaatgccgggcatt
cctggaaagacaggaactccaggttcccctgggcatcccagctatgtggccggcgtgaaa
ggggacgtcggcgcaaaaggagtaacaggtctgaaagggtatcctggtccagctggctct
cctggcatcagaggctttcctggcagcacaggaatcagaggagaaaaaggtattccagga
atttcaggccaatttggtactcctggctcacatggtgaaataggtgagcggggagaaact
atggacttaccaggaatgccaggtcttaaaggcgaagttggtgtgccaggcttaacaggt
acaagaggaggtgcagggcaaaaaggcgaaggtggtgatcctggttttcctggtattgaa
ggcctcaagggcacacagggtgtccctggttctgtgggacaagaaggtttgccaggactg
gtaggtgcccctgggcagcaaggaagccccggagagccaggatttcaaggtgaaaaggga
actccgggctggcctggcttaccaggacgaccaggctcacctggcttaagaggaatcagt
ggactgcatggtttaccaggcactaagggcttaccaggatcaccaggtccagatggctac
ggctctgcaggtttcccaggttcagtgggtgacaaaggagaagcaggagagccaagcaga
gtggaaggcagccaaggacctccgggtcagaagggagacagaggtgttccaggactccca
ggaccctttggcattcctgggcaggaaggatttccagggcctcctgggatttcaaatata
tcaggatatcccggtgataaaggctccccaggtctagacggagtgccaggctacccagga
ctacaagggcagcctggaataccggctccaccaggaagcaaaggagaaagtggacaaaca
ggtgtgagtggagaaattggtccaaaaggaagtagaggcgatcctggattagcagggaga
tctggcgttcctgggtaccctggaccaaaaggtcgtaagggtgaacaaggtgtcatcggc
tttatgggcccagtaggattgccaggtgatttgggacccatcggacccaagggggataga
ggagtaactgggtttcagggccctccaggctctcctgggctgccccctcttcctccaagg
ctggttgctgagcaaggttcaccaggtccccgtggaaatataggacctcaaggaagccca
ggagatacaggatctcagggtccaccaggcgatccaggtttcagaggctcacctggaggg
gcaggacttcaaggcaggggtggcatcccagctcctcccggctccagaggtgaacaagga
gcaacagggtttcagggtccagtgggatttgaaggtcagccaggccgccctggtagcccc
gggctaccaggcatgccgggtcgcagtgttaacatgggctacttgctggtgaagcacagc
cagtctgagcaagagccaatgtgtccagttggcatgaacaaactctggagtggatacagt
ctactttactttgaaggacaagagaaagcacacaaccaggacctagggctggccggctca
tgtttgactcgttttagtactatgccattcctctactgtaaccctggggatatttgttat
tatgccaatcgaaatgataaatcctactggctttcaactacagcacctcttccaatgatg
cctgtggcagaagaagacattaggccatatatcagtcgctgctcggtttgtgaggcccca
gctatggcaattgctgtccatagccaagaagcttctattcctcgctgccctgaaggctgg
cgcagtttgtggatcggatattccttccttatgcacactgctgctggtgatgaaggtgga
ggacaatcactggtttctcctgggagctgcttggaagatttcagagcgactcctttcatt
gaatgcaacggcgcacgcggaacctgtcactactttgcaaataaatacagcttctggctc
actacaattgaccagcccttccaaagcaagccctcagcagatacactcaaggcaggactc
atccgaagccatatcagcagatgtcaagtctgtatgaagaatttatag
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integrated database retrieval system
