Cuculus canorus (common cuckoo): 104055062
Help
Entry
104055062 CDS
T08597
Symbol
SMARCA2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
104055062 (SMARCA2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cuca03021
]
104055062 (SMARCA2)
03036 Chromosome and associated proteins [BR:
cuca03036
]
104055062 (SMARCA2)
Transcription machinery [BR:
cuca03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
104055062 (SMARCA2)
Chromosome and associated proteins [BR:
cuca03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
104055062 (SMARCA2)
Chromatin remodeling factors
BAF complex
104055062 (SMARCA2)
PBAF complex
104055062 (SMARCA2)
GBAF(ncBAF) complex
104055062 (SMARCA2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
104055062
NCBI-ProteinID:
XP_053910345
LinkDB
All DBs
Position
Z:complement(15060214..15173336)
Genome browser
AA seq
1568 aa
AA seq
DB search
MSTPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVPHPMPTM
GPTDYPQEGMHQMHKSIDGLHEKGMVEDIHCGSMKSMRPPHPGMGPPQSPMDQHSQGYMS
PHPSPLGAPEHVSSPMSGGGPTPPQMTPSQPGPIIQGDPQVMNQPNRGPSPFSPVQLHQL
RAQILAYKLLARGQPLPENLQLAVQGKRTLPGIQQQQPPSAFNRQSGIGLHTMSGAATGP
GPAPGMPGHTAAITPKTWTEGQAPDMSVSNTQQKLPAPPPSGRPSPAPAAAQPTAAMPGP
SVPQPPPGQPSPIVQLQQKQNRISPIQKPQGLDPVEILQEREYRLQARIAHRIQELENLP
GSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQTLRE
ARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHA
NTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVW
EHKQAQAAKEKKKRRRRKKKAEENAEGMASGLGPDGEPIDESSQMSDLPVKVTHTETGKV
LLGPEAPKASQLDAWLEMNPGYEVAPRSDSEDESGSEYEEEDDEEESSRLEADEKILLDP
NSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAITERVEKQSSLLINGTL
KHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLST
LSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIR
WKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFK
SCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEY
VIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQH
IEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMED
YFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVIIF
DSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMF
DQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRRED
ARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQ
WLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDSGKEDGEKAKKRRGRPPAEKLSPNPPKLT
KQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYR
SLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNDDEDE
DEEEESETESKSVKVKIKLNKKDEKSREKGKGKKRQSRAKAKPVVSDDDSDEDQDENDQS
EASGSDDE
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgcctacagatcctggtgccatgcctcatcctggtccttcccctggaccagga
ccttcacctggaccgattctaggacctagcccaggaccagggccatctcctggctcagtt
cacagcatgatggggccaagtcctggtccccccagtgttccacatccaatgccgacaatg
gggcctactgattatccacaggaaggcatgcaccaaatgcataagtctattgatggcttg
cacgagaaaggaatggttgaagacattcattgtggctccatgaagagtatgcgaccacct
caccctggaatgggcccacctcagagtccaatggaccagcatagccaaggttatatgtct
ccacatccatctccactgggagcaccagagcatgtgtccagtccaatgtctggaggaggt
ccgactccaccccagatgactcccagccagccaggacccattatacagggagacccgcaa
gttatgaatcaacctaacagaggcccttcccctttcagccctgtgcagctgcatcagctg
cgggctcagattctagcatacaaactgttagctagaggtcagcctttaccagaaaacctc
cagcttgctgttcagggcaagaggaccctccctggcattcaacagcagcagccacccagt
gccttcaacagacagtctggtattgggttacatacaatgagtggtgctgcaactggacca
gggccggctccagggatgcctggacatacagctgccattaccccaaaaacttggactgaa
ggccaggcaccagatatgagtgtctccaacacgcagcaaaagcttcccgcaccaccccct
agtgggaggccttctcctgcccctgctgctgcccaacctactgctgccatgcctgggcct
tctgtacctcagccaccgcctggacaaccttcacccattgttcaactgcagcaaaagcag
aatcggatcagccctatccaaaagccacaaggattggatcctgttgaaatactccaagaa
cgtgaatataggcttcaggctcgaattgctcacagaatccaggaactagagaacttgcct
ggttctctgcctcctgatctgcgaaccaaagctacagtggagttgaaggcacttaggtta
ctgaatttccagcgccagctaagacaagaggtagtagcctgcatgcgtcgtgacacaaca
ctggagacagcattgaactccaaagcgtacaaacgaagcaaacgccagactttgagggag
gcccgtatgacagaaaagcttgagaagcagcagaagatagaacaggaaaggaagcgtaga
cagaagcatcaggaatacctgaatagcatattgcagcatgctaaagattttaaagagtac
caccgatcagttgctgggaaaattcagaaactttctaaagctgtggcaacttggcatgcc
aacactgaacgtgagcagaagaaggaaactgagagaattgagaaagaaagaatgaggaga
ctaatggctgaagatgaagaaggctaccgtaagctgattgaccaaaagaaagatagacgc
ctggcttacctgttgcagcagacagatgagtatgtggctaacttgactaacctcgtatgg
gagcataaacaggcacaagcagccaaagagaaaaagaagagaaggagaagaaagaagaag
gctgaagaaaatgcagaaggaatggcatctggtcttggtcctgatggagagccaatagat
gagagcagtcagatgagtgaccttccagtcaaagtgactcacactgaaacgggcaaagtt
cttcttggtccagaagcaccaaaagcgagtcagctagatgcttggctggaaatgaaccct
ggctatgaagtcgctcccaggtcagacagtgaagatgaaagtggttctgaatatgaggag
gaggatgatgaagaagaatcaagcaggttagaagcagatgagaagatactcctggatcct
aacagtgaggaagtttctgagaaagatgcaaagcaaatcattgagacagccaaacaagat
gtggatgatgaatatagcatgcaatatagtgctagaggatctcagtcttactacactgtt
gctcatgcaatcactgaaagggtggaaaagcagtcttctcttcttattaatggcacacta
aaacattatcagctccagggactggaatggatggtttcactctataataacaatctcaat
ggaattttggctgatgaaatgggtctaggaaagacaatacagactattgcactcatcact
tacctgatggagcacaaaaggctgaatggcccctatctgatcattgttccactttcgact
ttgtccaattggacttacgaatttgacaaatgggctccttctgtggtgaagatatcctac
aagggtacacccgcgatgcgccgctcacttgttcctcagcttcgaagtggaaaatttaat
gttcttttaactacttatgagtacataataaaggacaaacacatccttgctaagattcga
tggaaatacatgatagtagatgaaggccatcgaatgaagaaccatcactgcaaactgact
caggtcttgaatactcactatgtggccccaaggagaatactgctgactgggactccattg
cagaacaaattaccagaactttgggctcttctcaatttcctccttccaaccattttcaag
agctgtagcacctttgaacagtggttcaatgctccatttgccatgactggagaaagggtg
gacttaaatgaggaagaaactattctgatcatccgtcgtctccataaagtgcttcgacct
ttcttgctgagaagattgaagaaggaagttgagtcgcaactgccagaaaaggtggaatat
gtgatcaaatgtgatatgtcagctcttcagaagatcctgtaccgtcacatgcaagccaag
ggaatccttctcacagatggttctgaaaaagacaagaagggaaaaggtggagcaaaaact
cttatgaacactatcatgcaattgagaaagatatgcaatcacccatacatgttccaacac
attgaggagtccttcgctgaacatttaggatattcaaatggtgtcatcaacggagctgaa
ctttatcgggcctcagggaagtttgagctactggatcgtattctaccaaagttacgagct
actaaccatcgtgtgcttcttttctgtcaaatgacatctctcatgaccattatggaagac
tactttgccttccgaaatttcctttacctgcgtcttgatggcacaacaaaatcggaggat
cgagctgctctcttgaagaagttcaatgaacctgggtcccaatattttatcttcttgctg
agtacaagggctggaggactaggcttaaatctccaggctgctgacacggttataatcttt
gatagtgactggaatcctcaccaggacttgcaggcccaagacagagctcaccgaattggt
cagcagaatgaagttcgagtcctgcgactgtgcactgtgaacagcgtggaagagaaaata
cttgcagctgcaaagtataagttgaatgtagatcagaaagttattcaggctggaatgttt
gatcagaaatcttcaagccatgaaaggagagcctttctacaggctatattagagcatgaa
gaagaaaatgaggaagaagatgaagttcctgatgatgagactctcaatcaaatgattgct
cgacgtgaggaggaatttgatctctttatgcgtatggacatggaccgccgcagggaagat
gccagaaatccaaagcgtaagcctcgcctgatggaagaggatgaattaccatcctggatt
attaaggatgatgctgaagttgaacggcttacatgtgaagaagaagaagagaaaatattt
ggtagaggatcccgtcaacgcagggatgtggactacagcgatgctcttacagagaaacag
tggctgagggcaattgaagacggcaatttggaagaaatggaggaggaggttcggcttaaa
aaacggaagagacgaagaaatgtggataaagattctgggaaggaggatggagagaaagca
aagaagagaagaggaagacctcctgcagagaaattgtcacccaatccaccgaaactgaca
aaacaaatgaatgctataattgatactgtgataaactacaaagacagttcaggacgacag
ctaagtgaagtcttcattcagcttccgtctaggaaagagttaccagagtattatgaattg
attaggaaaccagtggattttaaaaagataaaggaaagaattcgcaaccataagtatcgg
agtcttggagacttggagaaagatgtcatgttgctgtgtcacaatgctcagacgttcaat
ttggagggatcacagatctatgaggattccattgttctccagtctgtgttcaaaagtgca
cgacagaaaattgccaaagaagaagaaagcgaggatgaaagcaatgatgacgaagatgaa
gatgaagaagaagaatcagaaacagaatcaaaatcagtgaaagtcaaaatcaagctaaat
aagaaggatgaaaaaagtcgggagaaaggaaaaggcaagaagaggcaaagccgagcaaaa
gccaagcctgttgtgagtgatgatgatagtgatgaggatcaagatgaaaatgaccagtcg
gaagcaagcggaagtgatgatgagtga
DBGET
integrated database retrieval system
