Cuculus canorus (common cuckoo): 104055322
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Entry
104055322 CDS
T08597
Symbol
IFT88
Name
(RefSeq) intraflagellar transport protein 88 homolog isoform X1
KO
K16474
intraflagellar transport protein 88
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cuca03037
]
104055322 (IFT88)
Cilium and associated proteins [BR:
cuca03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
104055322 (IFT88)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_19
TPR_7
TPR_14
TPR_6
TPR_8
TPR_16
ANAPC3
TPR_11
TPR_17
ARM_TT21_4th
TPR_10
TPR-S
TPR_9
TPR_CcmH_CycH
TPR_15
HAT_PRP39_C
DUF2989
DUF6584
NatA_aux_su
ARM_TT21_2nd
Phage_CI_repr
DUF4810
Motif
Other DBs
NCBI-GeneID:
104055322
NCBI-ProteinID:
XP_053934931
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Position
1:7506989..7563662
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AA seq
791 aa
AA seq
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MMQNVHLAPEADEDDLYSGYNDYNPTFDTEDLENDVAFQQAARTSHGRRVPVTAKIPGTP
ASRSLATGFGSKATLTSSMGRPMTGAIQDGVARPMTAVQAAGYTKAAMRGSLFDPLGQGR
GPAPPLEMKNSDSTEEKIRQLEKKVNELVEESCIANSCGDLKLALEKAKEAGRKERVLVR
QREQTATPENFNSDLTYSVLFNLASQYAANEMYAEALNIYQVIVKDKIFSNGGRLKVNMG
NIYLKQRNYSKAIKFYRMALDQVSSAHKEMRIKIMQNIGVAFIKTGQYIDAISSFEHIMS
TSPNLKAGFNLILCYFAIGNGEQMKKAFQKLIAVPLEVDYDDKYISPNDDPHTNLLIEAI
KNDSLRQIEHERKSMAEEYIMTAAKLIAPAIETSFAVGYDWCVEAVKVSQYVELANDLEI
NKATMYLRQQEFNQALETLKMFEKKDSRVKSAAATNLSFLYYLENELAQAANYADLAVNS
DRYNPAALTNKGNTLFASGDYEKTAEFYKEALRNDSLCTEALYNLGLTYKKLNRIDEALD
CFLKLHAILRNSAQVLYQIANLYEMMGDPNQAIEWLLQLISVVPTDPHVLAKLGKLYDNE
GDKSQAFHYYSESYRYFPSNIEVIEWLGAYYIDTQFCEKAIEYFERAALILPTQVKWQLM
VASCYRRSGNYQKALEKYKVIHRKFPENVECLRFLARLCTDIGLKEGQEYETKLKKVEKL
KEIKEQRIKSGRDGSARSRREGSAGPESGGTKGERLSAKLKALPGANEPYESSIRKEIGK
WASHTFLLFWP
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaaaacgtgcatctggctcctgaggctgatgaagatgatctttattctggctac
aatgactataatcccacatttgacacagaggatttagaaaatgatgtggcttttcaacag
gcagcaagaacaagtcatggtagaagagtccctgtgacagccaaaattcctggtacacca
gcttcaagatctttagcaactggatttgggtcaaaggcaactttaacttcatctatggga
agaccaatgacaggagccatacaggatggggttgctcgaccaatgactgcagtgcaggct
gcaggttacactaaggcagctatgagaggttctttgtttgatcctcttggccaaggaaga
ggtcctgctccacctctggaaatgaaaaattccgacagtacagaagagaagattaggcag
ctggaaaaaaaagtgaatgaactggttgaagaaagctgcatcgccaacagctgtggagac
ttgaaactggctcttgaaaaagcaaaagaggctggaaggaaggaaagagtattggtgaga
caacgtgaacaaactgctactccagaaaacttcaactcagatcttacttactcagttctt
ttcaatctggccagtcagtatgctgctaacgaaatgtatgccgaagcactgaatatttat
caagttatagtgaaagataagatattcagcaatggaggcagactgaaggtgaatatggga
aatatatatttaaagcaacggaactattccaaagctatcaaattctaccgtatggctcta
gaccaggtatctagtgcccacaaagagatgaggattaaaataatgcagaatatcggagtt
gcatttattaaaactggccagtacattgatgccatttcttcatttgaacatataatgagc
acgtccccaaacttgaaggcaggcttcaacttgatcctgtgttattttgctattggaaat
ggtgagcaaatgaaaaaagccttccagaaactgattgcagtccccttggaagtggattat
gatgacaaatacatctcaccaaatgatgatccacatacaaatctactgattgaagccatt
aaaaatgacagcttaagacaaatagaacatgagaggaaatccatggcagaggagtacatc
atgacagctgctaaactcattgcaccagcgattgagacgtcttttgcagtgggctatgac
tggtgtgttgaagcagtaaaagtttcgcaatatgtagagttagccaatgacctagaaata
aataaagccactatgtacttgaggcagcaggaatttaaccaggcactggagactttaaaa
atgtttgaaaaaaaagatagcagagtaaagagtgctgctgcaacaaacctctcattcctt
tattatttggagaatgaattggcacaagcagctaactatgcagatttggctgtgaattct
gataggtacaatccagcagctctgactaacaaagggaatactctttttgcaagcggagac
tatgaaaaaacagctgagttttataaggaagctctcaggaatgattccttatgcactgaa
gcactttataatcttggtttaacatacaagaagttaaacagaatagatgaagctttggat
tgttttctgaaactccatgcaatccttcgaaacagcgctcaagtcctttaccagatagca
aacctatatgagatgatgggagatcccaatcaagccatagagtggctcttgcagttgatc
agcgtagtaccgactgatccacacgtacttgcaaaactagggaaattatatgataacgaa
ggtgataaatcccaagcttttcattattactctgagtcataccggtatttcccttcaaac
attgaggtcattgaatggcttggagcctattacattgacactcagttttgtgaaaaagcc
attgagtactttgaaagagcagcacttatcctaccaacacaagtgaagtggcagctgatg
gttgccagttgctacaggagaagtggtaactaccagaaagctctagagaagtataaagtc
atccacagaaaattcccagagaatgttgaatgcctccggtttttagctcgcctctgcaca
gatatagggctgaaagaaggccaggaatatgagacaaagctcaagaaagtggaaaagtta
aaagaaataaaagagcagcgcattaaatccggcagagatggcagtgcacgtagccgcaga
gagggaagtgctggtcctgagagtggtggcaccaaaggggaaagactgagtgccaaacta
aaagctttgcctggagcaaatgaaccctatgaaagtagcatcaggaaagaaataggcaag
tgggcatctcacaccttcttacttttctggccctga
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