Cuculus canorus (common cuckoo): 104055336
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Entry
104055336 CDS
T08597
Symbol
ATM
Name
(RefSeq) LOW QUALITY PROTEIN: serine-protein kinase ATM
KO
K04728
serine-protein kinase ATM [EC:
2.7.11.1
]
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03440
Homologous recombination
cuca04068
FoxO signaling pathway
cuca04110
Cell cycle
cuca04115
p53 signaling pathway
cuca04210
Apoptosis
cuca04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104055336 (ATM)
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
104055336 (ATM)
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
104055336 (ATM)
04210 Apoptosis
104055336 (ATM)
04115 p53 signaling pathway
104055336 (ATM)
04218 Cellular senescence
104055336 (ATM)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cuca01001
]
104055336 (ATM)
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cuca03032
]
104055336 (ATM)
03036 Chromosome and associated proteins [BR:
cuca03036
]
104055336 (ATM)
03400 DNA repair and recombination proteins [BR:
cuca03400
]
104055336 (ATM)
Enzymes [BR:
cuca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
104055336 (ATM)
Protein kinases [BR:
cuca01001
]
Serine/threonine kinases: Other
PIKK family [OT]
104055336 (ATM)
DNA replication proteins [BR:
cuca03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
104055336 (ATM)
Chromosome and associated proteins [BR:
cuca03036
]
Eukaryotic type
Meiosis-specific proteins
DSB formation-related proteins
104055336 (ATM)
DNA repair and recombination proteins [BR:
cuca03400
]
Eukaryotic type
Check point factors
Other check point factors
104055336 (ATM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAT
PI3_PI4_kinase
TAN
FATC
M-HEAT_ATR
HEAT
HEAT_ATR
Motif
Other DBs
NCBI-GeneID:
104055336
NCBI-ProteinID:
XP_053914879
LinkDB
All DBs
Position
1:5763676..5841882
Genome browser
AA seq
3074 aa
AA seq
DB search
MSLALHDLLVCCRRLENEKALERRKEIENFKRLLRDPETILQLDRNSDSKQGKQVNWDAV
FSVLQKYFQKEMKNLQLTKPNASASTQTMRQKKMQEVGSLVKYFIRCANKRGPRLKCQEL
LIYVMEIIRDQASCAAYGSDCSSILLKDILSVRKYWCEISQKQWSELLILYGQLYLKPSG
KINRVLVARIIHTLTRGYCFQTDKLSSDMLIFFSKAMQCARQEKNTAGLDHIVGAMSIFC
NKFAVNCRIRICKAGEEILPTMLYICTQYRPKDSLKESIIELFRLQVHIHHPKGAKTQDK
GAYDSTKWRSILHNLYDLLVNEINLIGSRGRYSSGSRNIAVKENLIELMADICHQVFAED
TKVLEITQSYAISQRESSDEAGPSKRRRIELGWEVIRDNLQRSQKDFDVIPWLQITARLI
SKYPMSLPNSELLPLLNVLHQLLPQQRRGERTPYVLKCLTEVALCQTQKTDVKNAQRLEL
QKTWAKIWSLTIRSISFQQTEVESFGLLGAMIQGNLVVTDKDLWKIFSGPACKPSSSAVC
CLSLVMSTYSVPENLDVGMEQNNCERNLNSLLKETIMKWILSCCLEEEMEECAELPPVLC
SDFPHLIVQNILVSLTMKNNRAAMIFFQNDAKCVQHLQGKEENSFSEVEELYLQTTFDEM
DIFTDIAVNVADKNVTGSRLAINQNLRETLENCLLSMSEKLLSSYSPKSKFVAAEHLVRC
VTLLIGVLGCYCYTGILKEEDACKSELFQKAKSLIHYAGESIAQSKNKLNEDAHINSLRT
LIMQCTKCLCNCTKNSANKMLSSIFLRLLSSKFMNDLVDICKSLMAVPGKPSELGEGDLM
GDDPEESIMEVDNQVSDDLFDDHSVTDISDTNESGEMQNVTGALSPLAEEQLTKQDLLLL
EILRFLCICVTNVQIQTLSFRASDIRRKLLMLTDRSVFDSAKPLHLHMYLVLLKELPVEE
HLLPEDDILTLLRPLSTVCSLYRRDQEVCKVILNNLLPIAAGLARSNAHTEETGLARGQL
LKVVGAFWYLSQGGECTAPVRVALLNCMKALLEADPHCKWAILNVVNEDLPVSDAFPRFL
TDSHHQVRILAAKSITSLFQDVKQRDSSGMSKPLPLKLQQKAFENAYLRVQEGMRNLVTG
DESPEDLLDKQCNGKAGLLMLITMVLCCSPVCEKQALFAICQSVKENGLEPHLVKKVLKK
VSDIFGYKSTEDFMTSHLDYLVMEWLRINDSGYSLSAFPYVLLNYTSLEEFYRSCYKVLV
PHLVIRSQFEDVKSLANKIEKDWRQVLADCFPKILVNILPYFAYQSHGKIEVAEQQDTAS
KVYDMLKDENCLGKQQIDNLSHNNLPEIVVELLMTLHEPPDNTVEEGAHLSKYIRELDPA
PNPPHFPSFVIKATLDYISNCHKSKLKSLVAVLSKSPDSFQKILLALCKHASDTNNIYKK
HRVLIIYHLFVSLLLKEIRDGLGGAWAFVLRDVIYTLIHHINNRPVIFRDVSMRSFSLCC
DLLHYVCHIAVTCCKDALESHLHVIVGTLIPLVPNAMDQPEIQEQVLGLLKYLVVDNKDN
ENLYHAIKCLDPFPEYPAFKDLRATQQKIKYSKGPYSLLEEINHFLSVGVCDSLPVTRLE
GLYDLRKKLEQYKDQMKDLLKNFQENPEDSAIVKLVVSLLQLSKMAVNHTGEKAVLEAVG
SCLGEIGPMDFSTIALQHAENALDSKAADLLEKKKLQWVFIMLTQINVALTDNCIDVRAA
AVSCLKNILATESGCEFWEVYKDKADPMLIYLQPFRISRKKCFVVPTKETEAPLEGLDDA
NLWIPVGESHETWIKHLTSSILDSGGVRNEVLQLMKPLCEVKTDLCQTLLPYLIHDILLH
DSDESWRNLLSVHIQKFFTACCRFASPSRSTTPPNSDSEQETHNFKSLDKVSRRAMLAVV
DYLRRQKRSLSGTVFDDSFWLDLNYIEVAIAAQSCAAHFTALLYAEIYADKINTDKQQER
SSFKAAKSLTFEEESQRSTISILDEKSKEETGISLQDLLMDIYRSIGEPDSLYGCGGGRM
LQPLARIRTYEHEAVWEKALVTYDLETSLPPSTRQAGIIEALQNFGLCHTLSMYLKGLEH
ENTEWCAKLQEIRYQAAWRNMQWGHISSVKDETGRPGYHESLYDALQSLRDKEFSAFYDS
LKDARVNEVEELCKGSLESVYSLYPTLCRLQLIGELENIGLLFSRSVTTQQLNDIYLKWQ
RHSQLLKDSDFRFQEPIMALRTVILEILLEKEIENTKRECIKDILTKHLVELSRLARTAK
NTQLPERAMFQIKQYNPAGYAVSEWQLEEAQVFWAKKEESLALNILKGMIKKLDADWFQV
ENDPHLKLMYTECLRLCGTWLAETCLENPTVIMQKYLEKAVEIAASHSGDSSDDLKKGKM
KAFLSLARFSDNQYQRIENYMKSSEFENKQALLKKAKEEVGLIMERRVQTNRYTVKVQRE
LKLDECAIHALTEDRKRFLCKAVENYISCLLSGEEHDMWIFRLCSLWLENSGVDRVNEMM
KKNAEKIPSYKFLPLMYQLAARMGTKMMGGLGFHEVLNNLMSRVSRDHPHHSLFIILALA
NASKDELLTKPDAIRRNKLIKNVPKEISQLDVDRMEAASNIINIVRKKRARMVRDIEALC
DAYITLANLDATPWKTHRFTEGISIPADQPIIKLKNLEDVVVPTMEIKVDPTGQYENLVT
IRSFKPEFRLAGGLNLPKIIDCVGSDGKERRQLVKGRDDLRQDAVMQQVFQMCNTLLQQN
TETRKRKLTIRRYKVVPLSQRSGVLEWCSGTTPIGEFLVNVHKGAHKRYRPKDYCASQCQ
KIMMDAQKKRPEEKYSIFMKVCENFQPVFRYFCMEKFLDPAVWFEKRLAYIRSVATSSIV
GYILGLGDRHVQNILIDEQTAELVHIDLGVAFEQGKVLPTPETVPFRLTRDVVDGMGITG
VEGVFRRCCEKTMAVMRNSQEALLTIVEVLLYDPLFDWTMNPLKALYLQQRPEDEADMSS
TLGTDPQEHKRKASSDDQSFNKVAERVLMRLQEKLKGVEEGTVLNVGGQVNLLIQQAMDP
KNLSQLFPGWKAWV
NT seq
9225 nt
NT seq
+upstream
nt +downstream
nt
atgagtcttgcattacatgatctgcttgtttgttgtcgtcgccttgaaaatgagaaagct
ttggagcgaaggaaggaaattgaaaatttcaagcgacttctccgtgatcctgaaaccatt
ctccagctggaccggaattctgattctaaacaaggaaaacaagtcaactgggatgctgta
tttagtgtcttgcagaaatatttccagaaagaaatgaaaaacttgcagctgacaaaacca
aatgcatctgcttcaacccaaactatgagacagaaaaagatgcaagaagttggaagtttg
gtcaaatatttcatcagatgtgctaataaaagaggacccagactgaaatgtcaggaactt
ctgatttacgtaatggaaattataagagaccaagcaagttgtgctgcttatggatctgac
tgtagtagtatactgctaaaagatatcctttcagtaaggaaatactggtgtgagatatcc
cagaagcaatggtcagagttgctgatcctgtatggccaattatacctcaaaccttctgga
aagattaatagagtcttggtggcaaggataattcacacacttacacgagggtactgcttc
cagaccgataagttgagttctgatatgctcatcttcttttcaaaagcaatgcagtgcgca
aggcaggagaagaatactgcaggcctggatcatattgttggagcaatgagtatcttttgc
aataagtttgctgtcaactgtcgcatacggatttgtaaagcaggggaagaaattttgcct
acaatgctttatatatgcactcagtatagaccaaaggattccctgaaggaatcaataatt
gagttatttcgtctccaagttcatattcatcacccaaagggtgcaaaaactcaggacaaa
ggtgcatatgactcaacaaagtggcgaagtatcttacataacctatatgatctgctggtg
aacgaaataaacctcattggtagtagaggaaggtattcttcaggctcacgtaatattgct
gtaaaggaaaatttgattgagttaatggctgatatttgtcatcaggtttttgcagaggat
accaaagttctggaaattacccaatcgtatgccatttcacaaagagagtccagtgacgaa
gcaggaccaagcaagcgcaggaggattgaactaggctgggaagtaattcgcgacaacctg
caaagatcccagaaggattttgatgtcataccttggttacagattacagctcgattaata
tcaaagtatcccatgagtcttcctaacagtgagctacttcccttactcaatgtacttcac
cagttactgcctcagcagcgccgcggagaaaggaccccgtatgtgctgaagtgtcttaca
gaggtagctttgtgtcaaacccagaaaactgatgtgaaaaatgcacaaaggctggagctc
cagaaaacctgggcaaagatttggtctcttaccattcgtagcataagtttccagcaaact
gaagtggaaagctttgggctacttggagctatgattcaaggaaaccttgttgtaactgat
aaagatctctggaagatattttcaggaccagcatgcaagccttcaagttctgcagtatgt
tgtttatcattagtgatgtccacctattcagtgccagaaaatttggatgtaggaatggaa
caaaataattgtgaaagaaatctgaattctctgttaaaggaaacaataatgaaatggata
ctatcctgctgtttggaggaagaaatggaagaatgtgcagagttacctcctgtgctctgc
agtgattttccacatcttattgtacaaaacattcttgtgagccttacaatgaagaacaat
agagctgccatgatttttttccaaaatgatgctaaatgtgtgcaacatttgcaggggaaa
gaagaaaacagtttttctgaagttgaagagctgtatctgcaaacaacatttgatgaaatg
gatattttcactgacattgcagtaaatgttgcagataaaaatgtgactggttcaagactt
gccatcaaccaaaatcttagggaaacactggagaattgtcttttatcaatgtcagaaaag
cttttaagcagctatagtcctaagtctaagtttgttgctgcagaacacctcgtccgatgt
gtcactctcttgattggtgttcttggttgctattgctacactggtatacttaaagaagag
gatgcctgtaagtctgagttgttccagaaggccaagtctctcattcattatgctggagaa
agcattgctcagtctaaaaacaaactaaatgaagatgcccacatcaactcactgaggact
ttgataatgcagtgtacgaaatgtttatgcaattgtaccaagaacagtgctaataagatg
ctttctagtatattcctgcgtttattaagttcaaaatttatgaatgatctcgtggatatt
tgcaaaagtctgatggcagttcctggaaaaccaagtgaactgggagaaggggatctaatg
ggggatgatcctgaggagagtataatggaagtagataaccaggtatctgatgatctattt
gatgatcattcggtgactgacatcagtgatacaaatgaatctggtgagatgcaaaatgta
acaggtgctttgagcccactagctgaagaacagttgacaaagcaggatttacttctcctt
gaaattctgcggttcttatgtatttgcgtaactaatgtccaaattcagacactgagcttc
cgagcctctgatatacggagaaagctgttaatgctcactgatcgcagcgtctttgatagt
gctaagccattgcatctgcacatgtacttggtccttttgaaggagctccctgttgaagaa
cacctcttgcctgaagatgatattcttacgcttcttaggcctctttctactgtgtgttct
ttgtaccgtcgagatcaagaagtttgtaaagtgattctaaataatttgcttcctatagca
gcaggattggctcggtccaatgcacacaccgaagagacagggcttgccagaggacaactt
ctaaaagttgttggagccttttggtatttatctcaaggaggggaatgcacagcgccagta
agagtggcccttttaaactgcatgaaagccctgcttgaggctgatccacattgcaagtgg
gcaatccttaatgtggtgaatgaagatctacctgtgagtgatgctttcccccgttttctc
acagatagtcaccatcaagttcgcattcttgctgcaaaatcgattaccagtttgtttcaa
gatgtgaaacagagagattcttctggaatgtcaaaacctcttcccctgaagctccagcag
aaggcttttgagaatgcatatctcagagtccaggaaggaatgagaaatctggttactggt
gatgaaagtcctgaagaccttttggacaaacagtgtaatggaaaagcaggtttgctgatg
cttataactatggttctgtgctgcagtccggtctgtgaaaagcaagctttgtttgctatt
tgccagtctgtgaaagagaatgggttagaacctcaccttgtgaaaaaggttttgaaaaaa
gtatctgacattttcggctataaaagtacagaagacttcatgacatcccatttagactat
ttggtgatggagtggctgagaataaatgacagtggatacagtctatctgctttcccttat
gttcttctgaactatactagccttgaggaattctacaggtcttgttataaagttttggtt
ccacacctggtgattagaagtcaatttgaagatgtgaaatcacttgccaacaagattgaa
aaagattggagacaggttctagcagactgttttcccaagatacttgtgaatatcctccct
tattttgcctatcaaagccatggaaagattgaagtagcagagcaacaagacacagcttct
aaagtctatgacatgcttaaagatgaaaactgcttaggaaaacagcaaattgacaattta
tctcataataacttaccagagattgtggttgaactcttgatgaccttacacgagccacct
gataacacagtagaagaaggagctcatctaagtaaatatataagggaactggatcctgct
cctaatcctcctcattttccatcttttgtgattaaggcaaccttggactatattagcaac
tgtcataaaagcaaattgaaaagtcttgtagcagttctttctaaaagccctgattcattc
cagaaaatccttctggctctctgtaagcatgcatcagatacaaacaacatttacaagaaa
cacagggttcttataatttatcacttgtttgtcagtctgcttcttaaagagattagagat
ggtttaggaggagcatgggcttttgtcctccgagatgtaatttacaccctgattcaccac
atcaacaacaggccggttattttcagagatgtatccatgcgcagcttttcactctgttgt
gatcttcttcattatgtttgccacatagcggttacgtgttgcaaagatgctttagagagc
caccttcatgttattgtaggaaccctgatacctctagtacctaatgccatggaccagcct
gagattcaggaacaggtcttaggcctgttgaagtatctggtggtagataataaggataat
gaaaatctgtaccacgcaatcaaatgcttagatccttttcctgaatatcctgcttttaaa
gatttgcgagcaactcaacagaaaataaaatacagtaaaggaccgtattcacttttggag
gaaattaatcactttctctcagttggtgtttgtgattcactgcccgtgacacgacttgaa
gggctgtatgatttacgcaaaaagttggaacaatataaagatcagatgaaagatctcctg
aaaaatttccaagaaaacccagaagattctgcaatagtgaaattggttgtgagcttacta
cagctgtccaagatggcagttaaccatacaggtgaaaaagcagtgctcgaggctgttgga
agttgcttgggagaaataggtcccatggatttctccaccatagctcttcagcatgctgaa
aatgcactggattctaaagcagcggacttacttgaaaaaaaaaaacttcagtgggtgttc
ataatgttaacacaaataaatgttgctttaacagataactgtattgatgttagagctgct
gctgtttcctgtttgaaaaacatattagccaccgagtctggctgtgaattttgggaagtt
tacaaagataaagctgatccaatgttaatctatctacagcctttcagaatatctagaaaa
aagtgttttgtagtacctactaaggaaacggaggctcctttagaaggtctggatgacgca
aatctgtggattcctgtgggagaaagtcatgagacctggatcaagcacctaactagttca
atactggacagtgggggtgtacgaaatgaagttctccagttaatgaagccactatgtgag
gtgaaaacagacttgtgtcaaactctgcttccatacttgattcatgatatacttcttcat
gactcagatgaatcttggagaaatcttttgtcggttcacatccagaagttttttacagcc
tgctgcagatttgcctcacctagtagatctaccacacctccaaattctgattcagagcaa
gaaacccataattttaaaagtttggataaagtatctcgacgagccatgcttgctgttgtt
gattacttaagaagacaaaaaagatctctttcaggtacagtctttgatgacagtttctgg
ctggatctgaattatattgaggttgctatagcagcacagtcttgcgctgctcacttcaca
gccttgctctatgcagaaatctacgcagacaagataaacacagacaaacagcaagaaagg
tcatcctttaaagcagctaagagtctgacatttgaagaagaaagtcaaaggtcaactatt
agtattttggatgaaaaaagtaaagaagaaactggaataagtttacaggaccttctcatg
gacatatatagaagcattggagaacctgatagcctctatggctgtggtggaggaagaatg
ttgcagccattagcacggataagaacgtatgagcatgaagcagtatgggagaaagctctt
gtaacatatgaccttgagacaagcctccctccatctactcgccaggcaggaataatagag
gctttgcagaattttggcctttgccacactctttcaatgtatttaaaaggactggaacat
gaaaacactgagtggtgtgcgaagctacaggaaatacgctaccaggcagcgtggaggaat
atgcagtggggccacatctcttctgtcaaagatgagacaggaagaccagggtaccatgaa
tcattgtatgatgctcttcagtctttacgagataaggaattctctgctttctatgatagt
cttaaagatgccagagtgaatgaagtagaagagctgtgcaaaggcagtcttgagtctgtt
tattcattatatccaactctttgcagactgcaactaattggagagttggaaaatataggt
ctgctattctccagatctgttactactcaacaactgaacgatatttatttgaaatggcag
agacattcccagcttctcaaggacagtgacttccgtttccaggaacctatcatggctctg
cgcactgtaattttggagatcttacttgaaaaggagattgaaaataccaagagggaatgt
attaaagacatcctgaccaaacatctagtggagctttctagattggcaagaactgctaaa
aatacacagcttccagaaagagctatgtttcagatcaaacaatacaatccagcaggatat
gcagtttctgaatggcaactagaagaagctcaggttttctgggctaaaaaggaagagagt
cttgcactgaatattcttaaaggcatgataaaaaaattagatgcagattggtttcaggtt
gagaatgatcctcatctgaaattgatgtatacagagtgtctgaggctatgcggaacctgg
ctggcagaaacatgcttggaaaaccctacagtcatcatgcagaaatacttagaaaaggct
gtggaaattgctgcaagccacagcggagacagcagtgatgacctgaagaaaggaaagatg
aaagctttcttatctttggctcgtttctcagataatcagtaccagcgaattgagaattac
atgaaatcctcagagtttgaaaataagcaggcattactgaagaaggccaaggaggaggtt
ggcctcatcatggagcgtagagttcagacaaacagatacacagtgaaagttcagcgagaa
cttaagctggatgagtgcgccatacatgccctaactgaggatcgtaaacgtttcttgtgt
aaagcagtggagaactacatcagctgcttactaagtggagaagaacacgatatgtggatc
ttccgactctgttccctgtggcttgaaaattctggagttgatagagtcaatgaaatgatg
aagaaaaatgcagagaagatcccttcatacaagtttttgcctctgatgtaccagctggct
gctcggatgggaaccaagatgatgggtggtttaggatttcatgaagttctgaacaatctg
atgtctagagtctcacgggatcatccacatcactctttgtttataatactagctttggca
aatgctagcaaagatgaactccttacaaaaccagatgcaataagaagaaataagttaatt
aaaaatgtaccgaaagaaatctcccagcttgatgtggacagaatggaggctgctagcaat
ataattaatattgtaagaaaaaagagagctcgcatggttagagacattgaagcactttgt
gatgcttacatcacattagcaaatctagatgctactccatggaaaacccatagatttaca
gaaggaataagtattccagctgaccagccaattattaaactgaagaacctggaagatgtt
gttgttcctaccatggagattaaggtggatcccacaggacaatatgaaaatttggtcaca
ataaggtcttttaagccagaatttcgtttagcaggaggcctgaatctgcctaaaataata
gactgtgtaggatcagatggtaaagaaaggaggcagctggttaaggggcgggatgacctg
agacaagatgctgttatgcagcaggttttccagatgtgcaatacattgctccagcaaaac
actgaaacacggaagagaaaattaactatccgaagatacaaggtggtacctctttctcag
agaagtggtgttcttgagtggtgctcgggaacaactcccattggggagtttcttgtcaat
gtccacaagggagctcacaagagatacaggccaaaagattactgcgcttcccagtgtcag
aaaataatgatggatgcacaaaagaagcgtcctgaagagaaatacagcatcttcatgaaa
gtctgcgagaactttcagcctgtctttcgttatttctgcatggagaaattcctggatcca
gctgtgtggtttgagaaacggttggcgtacattcgcagtgtggctacatcttccatagtt
ggctacatacttggccttggagacaggcacgttcagaatatcctgatagatgaacaaaca
gcagaactcgtgcatatagatctgggggttgcttttgagcaaggtaaagtcctaccaaca
ccagaaactgtgccatttagattaaccagggacgttgtggatggaatgggcattactggc
gtggaaggagtcttcaggagatgctgtgagaaaacaatggctgttatgagaaattctcaa
gaagctttgctgactattgtagaggtgcttctctatgatcctcttttcgactggaccatg
aaccccttgaaagctttgtacttgcagcagagaccagaggatgaggctgacatgagctct
acgctcggtacagatccacaagaacataaaagaaaagccagcagtgatgaccagagtttt
aacaaagtggctgagcgtgttctgatgagacttcaggagaagctgaaaggtgttgaggag
ggaacggtgctcaatgtgggagggcaggtgaacctcctcatacagcaggccatggacccg
aaaaatctgagccaactcttccctgggtggaaagcttgggtgtga
DBGET
integrated database retrieval system
