Cuculus canorus (common cuckoo): 104056117
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Entry
104056117 CDS
T08597
Symbol
THOC5
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03013
Nucleocytoplasmic transport
cuca03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104056117 (THOC5)
09122 Translation
03013 Nucleocytoplasmic transport
104056117 (THOC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuca03019
]
104056117 (THOC5)
03041 Spliceosome [BR:
cuca03041
]
104056117 (THOC5)
Messenger RNA biogenesis [BR:
cuca03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
104056117 (THOC5)
Spliceosome [BR:
cuca03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
104056117 (THOC5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
104056117
NCBI-ProteinID:
XP_009555632
LinkDB
All DBs
Position
17
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AA seq
683 aa
AA seq
DB search
MSSDSSKKRKPKVIRTDGGPQEGKRGKADGDQDTRYYSEESEVDLRDPIRDYELYRETCQ
ELQRLMAEIQELKSRGVKDNAAEIDERRIQSCVHFMTLKKLNRLAHIRLKKGRDQTHEAK
QKVDAYHLQLQNLLYEVMHLQKEITKCLEFKSKHEEIELVSLEEFYKEAPPEISRPAVTL
SEPHQQTLARLDWELEQRKRLAEKYKECLTSKEKILKEIEVKKEYLSSLQPRLNSIMQAS
LPVQEYLFMPFDQAHKQYETARHLPPPLYVLFVQASAYGQACDKKLVVAIEGSVEEAKAL
YKPPEDSQDDESDSDVEEEQTTKRRRPTLGVQLDDKRKEMLKRHPLSVTIDLKCKDENVL
HLTFYYLMNLNVMTVKAKVTTAIELTTAISAGDLLSPDSLLNCLYPGDHGRKTPNPANQF
QFDKVGIQTLSDYVTELGHPYVWVQKLGGLHFPKDQPQHTVTADNSLSASHMELTVKLLR
TRLQSRLALHKQFASLEHGVVPVSSECQHLFPTKIVSRLVKWTAIPYEDYAELPYTKDVI
EAGLAEDTHLYYMALIERGTAKLQAAVVLNPGYSALPPVFSLCLNWKGERNGSNDDNIRA
MESEVNVNYKELWGPKPGYQLLTNQLQRLCMVLDVYLETEPHDPSVEGPKEFPQEKMCLR
LVRGPMRLKPFKFNYPQGFFSHR
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcagactccagcaagaagaggaagcccaaagtgatccgcacagacgggggccca
caagagggcaagcggggcaaggccgatggcgaccaggacactcggtactacagcgaggag
agcgaggtggatctccgtgaccccatcagagattatgagctctacagagagacatgccag
gagctccagaggctgatggcagaaatccaggagctgaagagcagaggcgtgaaggacaat
gctgcagagatcgatgagcggcggattcagagctgcgtccacttcatgacgctgaagaaa
ctaaaccgattggctcacattcggctgaagaaagggagagatcaaacccatgaggcaaag
cagaaggtcgatgcctatcaccttcagctccagaacttgctctacgaggtgatgcacctg
cagaaagagatcaccaagtgcctggagttcaagtcaaagcatgaggaaattgagctggtg
agcttggaggagttttacaaggaggctcctcccgagatcagccggcctgcggtcaccctg
tctgagccccaccagcagaccctggcccgcctcgactgggagctggagcagcgcaagagg
ctggcagagaagtacaaggaatgcctgaccagcaaggagaagatcttgaaggagattgag
gtgaagaaggagtatctaagcagcctccaacctcgcctcaacagcatcatgcaggcctcc
ctgcctgtccaggagtacctcttcatgccttttgaccaggcgcacaagcagtacgagaca
gcccgccacctcccgccacctctctacgttctcttcgttcaagccagtgcctacggtcag
gcctgcgataagaagcttgtggtggccattgaagggagtgtagaggaagccaaagccctg
tacaagccacctgaggactcgcaggatgatgaaagtgattctgacgtggaggaggagcag
acaacgaagcggcgcaggcccaccctgggtgtgcagctggatgacaagcgtaaggagatg
ttgaagcggcaccccttgtctgtcaccatcgacctgaagtgcaaggatgagaacgtgctt
cacctgaccttctactacctgatgaacctcaacgtcatgacagtgaaagccaaggtgact
actgccattgagctgacaaccgccatcagtgccggcgatctgctctccccggactccctc
ctcaactgcctctatcctggagaccatgggaggaaaacacccaacccggccaaccagttc
cagtttgataaagtgggcatccagaccttgagtgactacgtgacagagctggggcacccc
tacgtgtgggttcagaagctgggcggcctgcatttccccaaggatcaacctcagcacacg
gtcaccgcagacaactcgctgagtgccagccacatggagctgacggtgaagctgctgcgg
acaaggctgcagtcgcgcctggctctgcacaagcagtttgcatcgctcgagcacggcgtt
gtgccagtctccagcgagtgccagcatctcttccctaccaagatcgtctcgcgcctggtg
aagtggactgccattccctatgaagattatgcagagctgccctacactaaagatgtgata
gaggctggcttggctgaagacacccacctctactacatggccctgatagaaaggggaaca
gccaagctccaggctgctgtggtcctgaaccctggttattctgcgctgccgcctgtcttc
agcctgtgcctgaactggaaaggagaacgaaacggcagcaacgacgacaatattcgggcc
atggagagtgaggtcaacgtcaactacaaggagctgtggggacccaaaccgggctaccag
ctcctcaccaaccagctgcagcgtctctgcatggtgctggatgtctacctggagacagaa
ccccacgaccccagcgtggagggacctaaggagtttccccaggagaagatgtgtctacgc
ctagtgaggggccccatgcgcctgaagccgttcaagttcaactacccccaggggttcttc
agccaccgctga
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integrated database retrieval system
