Cuculus canorus (common cuckoo): 104056121
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Entry
104056121 CDS
T08597
Symbol
RFC5
Name
(RefSeq) replication factor C subunit 5 isoform X2
KO
K10756
replication factor C subunit 3/5
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03030
DNA replication
cuca03410
Base excision repair
cuca03420
Nucleotide excision repair
cuca03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104056121 (RFC5)
03410 Base excision repair
104056121 (RFC5)
03420 Nucleotide excision repair
104056121 (RFC5)
03430 Mismatch repair
104056121 (RFC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cuca03032
]
104056121 (RFC5)
03036 Chromosome and associated proteins [BR:
cuca03036
]
104056121 (RFC5)
03400 DNA repair and recombination proteins [BR:
cuca03400
]
104056121 (RFC5)
DNA replication proteins [BR:
cuca03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
104056121 (RFC5)
DNA Replication Termination Factors
ELG1-RFC complex
104056121 (RFC5)
Chromosome and associated proteins [BR:
cuca03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
104056121 (RFC5)
DNA repair and recombination proteins [BR:
cuca03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
104056121 (RFC5)
Check point factors
HRAD17(Rad24)-RFC complex
104056121 (RFC5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_22
AAA_24
AAA_16
AAA_11
AAA_lid_RFC1
AAA_assoc_2
DEAD
nSTAND_NTPase5
AAA_14
ResIII
DUF815
RuvB_N
AAA_5
AAA_30
AAA_19
PhoH
AAA_7
DNAX_ATPase_lid
TniB
TIP49
nSTAND3
ATPase_2
AAA_25
Thioredoxin_6
bpMoxR
NPHP3_N
AAA_28
AAA_3
Hydantoinase_B
ABC_tran
Motif
Other DBs
NCBI-GeneID:
104056121
NCBI-ProteinID:
XP_009555636
LinkDB
All DBs
Position
17:complement(12434617..12437951)
Genome browser
AA seq
329 aa
AA seq
DB search
MARAGGANLPWVEKYRPQALSELVSHRDILSTVQRFISEDRLPHLLLYGPPGTGKTSTIL
ACARQLYQEREFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMT
QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVIQ
EEGVDVTEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEENVYTCTGHPLKSDIANIL
DWMLNQDFSTAYRKIMELKTLKGLALQDILTEIHLFVHRVDFPPSIRIQLLIKMADIEYR
LAAGTSEKIQLSSLIAAFQVTRDLIVAEA
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgggcgggcggtgcgaatttgccctgggtggagaagtaccggccgcaggccctg
tcggagctggtgtcgcaccgggatatcctcagcactgtgcagcggtttatcagcgaggat
cggctcccgcatctccttctctatggacctcctgggaccggtaagacctcgaccatcctc
gcctgtgccaggcagctctaccaggagcgggagtttggctccatggtgctggagctcaac
gcctccgatgaccgaggtatcgacatcgtccgagggcccatcctgagcttcgccagcacc
aggaccatcttcaagaagggcttcaagcttgtcatcctggatgaagctgatgccatgacc
caggatgcacagaacgccctaaggcgagtgattgagaagttcacagaaaacacccgcttt
tgcctcatctgcaactacctctccaagatcattcccgccttgcagtcccgctgcacgcgc
ttccgcttcgggcccctcaccccggagctgatggtgccccggctgcagcacgtcatacag
gaggagggggtggatgtaacggaggatgggatgaaggctctggtgactctctcgagcggt
gacatgcgcagagccctcaatatcttgcagagcaccaacatggccttcgggaaggtgaca
gaagagaatgtctacacctgcacgggacaccccctcaagtctgatattgccaacatcctc
gactggatgctgaaccaggacttttccaccgcctatcgcaaaatcatggagctgaagacg
ctgaagggcttggcactacaggacatcctcaccgagatccacctctttgtgcacagagtc
gatttcccaccctcaatccgcatccagctgctgatcaaaatggcagacatcgagtaccgt
ctggctgctgggaccagtgaaaagattcagctgagctccctcatcgcagctttccaagtc
accagggacctgatcgtagccgaagcctga
DBGET
integrated database retrieval system
