KEGG   Cuculus canorus (common cuckoo): 104056196
Entry
104056196         CDS       T08597                                 
Symbol
RIF1
Name
(RefSeq) telomere-associated protein RIF1 isoform X1
  KO
K11138  telomere-associated protein RIF1
Organism
cuca  Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:cuca00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cuca03032]
    104056196 (RIF1)
DNA replication proteins [BR:cuca03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    104056196 (RIF1)
SSDB
Motif
Pfam: Rif1_N
Other DBs
NCBI-GeneID: 104056196
NCBI-ProteinID: XP_053925912
LinkDB
Position
6:complement(1946729..1977972)
AA seq 2332 aa
MSAPAAGSSLQPLLETLQDPTAPPGELTDAYLTVVSRMTGEGGKEFTADVGRHFPQLCKA
FKAHISSQNSELSNAALQALGFCVFSSKITSELSATEIHDLLSMVTAVAVKASDKNTRTR
ALWVISKQVFPSEVIKKEVSNIISTLETVLTKGDVQSMVVEYEALNVIIRLMEQTPAQMG
EEAVRWAKLIIPLVVHSAHKVQLRGATALEMGMPLLLQKQQEVAAVTEHLMTTKLISELQ
KLFSTKNETYVLKLWPLFVKLLGKTLHRSGSFINSLLQLEELGFRSGSPVVKKIAFIAWK
SLIDNFALNPDILCSAKRLKLLMQPLSSIHVRTEALALTKVEVWWYLLMRLGPQLPANFE
QVCVPLIQSTLSLDSSAVLQGTPSRVPANQSVAAAAPAQKAGPYPFPSPVTPRMNLNCST
AGVVALPSIQLLGIEMLLHFLMGPEVVDFAKRNKLVLSLEPLQYPLISSPSFFCKHANTL
INAVQDGFIAIGKEVPDCMLNVIWKDINGYVKTVIESGNKKEKQGSEILTTLLQALKNIV
RSNSLPVQKILSLIDITVKEFPPKVLGSPAYQVADMDLLNGTPALFLIQLPFHNNILECC
VTDERFFVILESLVGYVLSGPASPLAFSESVICIINQSAKQVENKEHLWRMWSIVVNPLT
EWINRTNEVNQGDALEHNFNAVYSALLLPISHIFPAQEFPQPTMKSLLRTWSDLYRAFAR
CAALVATAEENLCCEELCAKIISGLEGEAPVMFSVMEGLTHIVSVMVDCINFAPYGTKYQ
PKTRSPQTPTDWSKKKKEPLGKMSSLFKLLVMLLNSFHVFSSKETCSDTLLAVGTSIIAV
LHSIISHVSLPSVIGTILALLSKPLAAFYEKTKLADVSKVYSNLNNKLEKLLAEIILCLQ
SHCTGAYDSELLKHLSPLLCVVFQHKSKQIRNQCAHFWNATFAKSASLTYPEELKSVLSQ
AKKKIPLLLPGFESIEIAEECSGPFSDAVENSQLDAKISGMEVKPGQKRDSILAQTSELK
NDVKDKSGNVQVTSAKLKLEFSSLKPKSEILLEEEKSADFVFIPPETKTRILTEHQKEVL
RSKRVGIPTMYNNLDSSQDTALFSQYTQSQEDSLEKSPLTENTREDAKNKPEEENAESKG
CTNKPDGITEDCKSDKPPEDADCVNKSSVTRTEASSTSNSEGDSRRDAAEMIPEVPSVGE
DLEKSTVEAASKEPLAANENTSAVSTSSTSSDIISGTPQPASRRQSFITLEKFGSSESRP
FSLSAFSSLSETPGSVSVAGKQENTTACKAGTNPEKPGEGNKKPSKAESEQIFTAIRRLT
RRQGKTDHRGNKQSKLSARSEQEKSTQGSLDLSSVEDSPELCSGESVEHVLLAQSEAVHS
TEAEMKKAEDAETEKSQVLDMDSKENTPPERTVSPDQVAGSDSQVPHVSPHQKTLRRSSR
RQSEGVESPAGSQEKEDGHQKTDRHKDDEKSRPKKVPQTKDDASQKQKVSGKTAENTNKK
ESSVPERTTTEDLSAKEPPAARDLEEENRSARKSEDNLKTDTEGQDCSTNAVGQKKVERP
RYHTRRSSQGLLSSIENSEGDGSETKEESTRKKRSVKAKNRTSSLGGKSKDRQPGSRSHE
GSGQGNETKNLQATNKDELSHDISTDAALPSEVCDQETQVTSPDAIKAVGATSSKISPDA
QSTDGEQESNTPMELFTSPGVSDQGLKAAEENKHVEKQIDSKDGRPAVLPEGVPGAKASG
GDLSSSQTAECQHKRSKRLKRPRSCDCCSQKSKQPLRSLTESRNKSSHELNESSRELNEP
QTSPVQVTENLSEVSGNSNLDESLSMAPCAMSTPLQPPKEPSAFNLEGERTSEDAAQGNS
GAVEEDLENPEFTAHEGSDSVAAVTEPAGQSDQTEQSLPECVSDEPGDGSLAAENRSEEP
AAMEEEGISQNGQLEEIPEAPVVVSKTEEKQEDELESSQDDKAADENSAGSTYIIQEEEV
KEELVETEITVPENVPLDKEDAVENNSVNSPQKPDHDSFVSVNESPNSMQARCIWSPSAS
PSTSILKRGVKRNQDDDSLSPANKIRRVSFANPIYQEGLADDIDRRSPVIRAHSSSPSSR
SLKILSNIQAKHITTPTKGFLSSGSRNARFKSSKKCLITEMAKELLPCPTECVYPALAGC
KAPVDVILPQITSSIWSRGLGQLIRAKNIKTVGDLSALTASEIKTLPIRSPKVCNVKKAL
RGFHEQQVKSRGFEEIAALEDAEKPEDKSPSADEEKLATDLTEPVVVTMTDPPTVDLLSQ
MDALAAQLTSEDLHSYSGSQLFEMQEKLLVMTNCVMKTLQARWKSPPHDTSD
NT seq 6999 nt   +upstreamnt  +downstreamnt
atgagtgctcccgctgccggctccagcctgcagcccctcttggagaccctgcaggacccc
accgccccgccgggggagctcaccgacgcctacctcaccgtcgtcagtcgcatgacgggt
gaaggtggcaaagaatttactgcagatgtcggaagacacttcccacagctttgcaaagcg
tttaaggcacacatttctagtcaaaactcagagctaagtaatgcagcattgcaggcgctg
ggattctgtgttttcagttcaaagattacatctgaattatctgcaacggaaattcatgat
ttgctttcaatggtgaccgctgttgctgtaaaagcttcggacaaaaacactcgcactcga
gcactttgggtgatctctaagcaggtgtttccttcagaagttattaaaaaggaggtgtcc
aatattatttctaccctggaaacagtacttactaaaggagatgtgcagtcgatggtggtt
gaatacgaagcactaaatgttattatacgcttaatggagcaaactccagcccagatgggg
gaagaggctgtgcggtgggcgaagctgatcattcccctggtcgtgcactcagcccataag
gtgcagctgcgaggtgccactgcgctggagatgggcatgcctctgctcctccagaagcag
caggaggtagcggccgtcactgagcacctcatgaccacaaaattaatttcagaacttcag
aaattgttttccacaaaaaatgagacgtatgtgttaaaattgtggccgctatttgtcaaa
ttgcttggaaagactctgcatcgtagtggaagttttatcaactcgttgctgcagctggag
gaacttggatttcgtagtggctcgccagtggtaaagaaaatagccttcattgcatggaag
agtctaatagataattttgctctaaatccagatattttgtgcagtgctaaaaggctgaaa
ttgctcatgcagccgctgagctcaattcatgtgagaacagaggctttggcgttgacaaaa
gtggaggtgtggtggtatctactcatgaggctgggacctcagctgcctgcaaactttgaa
caggtgtgtgtgccattaatccaaagcactttaagtctcgattcctctgctgtgttgcaa
ggaactccttcacgtgtcccagccaaccaaagtgtagctgcggcagcccctgcacagaaa
gcaggtccttacccgtttccaagtccagttacaccaaggatgaacttgaattgtagtaca
gctggagtggtggcgctcccttccattcaacttttgggaattgaaatgctgcttcacttc
ttgatgggaccagaagttgtagattttgcaaagcgaaacaaacttgtacttagtttagag
ccactccagtacccgctgatcagtagcccttcttttttttgtaagcacgccaacacgctt
ataaacgctgtacaggatggctttattgcaattggaaaagaagttcctgattgtatgctg
aatgtcatatggaaggacataaatggatatgtaaaaacagtgattgaatcaggaaataag
aaagaaaaacaagggtcagaaatactgactacgttgctccaggccttaaaaaacatcgtt
agatccaattctcttcctgtgcagaaaatactgtccctcattgatattactgttaaggaa
ttccctccaaaagtattgggatcaccagcttatcaggttgcagatatggatcttctaaat
ggaacgccggctttgttcttaattcagctgcctttccataataacatcctggaatgctgc
gttacagatgagagattctttgtaattctagagtcactcgtgggttatgttctgtctggg
cctgcgtctccgctggctttcagtgaatccgtgatctgcattattaaccagagcgcaaag
caagtggagaataaggagcatctctggagaatgtggagtattgttgtgaatccactcact
gaatggattaatcggactaacgaagtcaatcaaggtgatgcactggaacacaacttcaat
gctgtttatagtgccttgttgctaccaatatcgcacatcttccctgctcaggaattccca
cagccgaccatgaagtccttgttgcgcacttggtccgacctgtatcgagcatttgctcgc
tgcgctgctttagttgccacagcagaagaaaacctgtgctgtgaagaactctgtgccaaa
ataatatctgggcttgaaggtgaagctccagtaatgttttcagtgatggaaggtctcacc
catattgtatcagttatggttgactgcatcaactttgcaccatatggaactaaatatcag
ccaaaaacaagatctcctcagacacccacagattggtctaagaagaagaaggaacccctc
ggaaagatgtcctctctgtttaaactcctggtgatgttactaaactctttccacgtgttc
agttccaaagaaacctgttcagacacattgcttgctgttggtacttcgattattgctgtg
ctccacagcatcatcagccatgtttcgttgccctcggtgattgggactatccttgcactt
ttgtcaaagcccctggcagcgttttatgagaaaacaaagcttgctgatgtgtctaaggtg
tacagtaaccttaacaacaagcttgagaagctactggccgagattatcctgtgcttgcag
tctcactgcactggcgcttacgacagtgagctgctgaagcatctctctccgttgctctgt
gttgtatttcagcataagagcaaacagatccgcaaccaatgcgcccatttctggaatgcc
acgttcgccaagagtgcatcgttaacctaccctgaagagttaaaatctgtgttaagccaa
gctaaaaagaaaattccgcttttgctgcctggttttgaaagcatcgagatagctgaagaa
tgcagcggcccgttctctgatgcggttgaaaactcacagctggatgcaaagataagtggg
atggaagtaaagccaggtcaaaaacgagactctatattggcgcagacaagcgaactaaaa
aacgatgtaaaagacaaatctggcaatgtgcaagtaacttctgcaaagctcaaactagaa
ttttcatctttgaagcctaaaagcgagatacttttggaagaggagaaatctgctgatttt
gtgtttattcctccagaaacaaaaacaagaatattgacagagcatcagaaagaagtgctt
aggtccaagagggttggcattcccactatgtacaacaacttggactcgtcgcaggacact
gccttgttttctcagtacacccaaagccaggaggattccttggaaaaatcacctttaaca
gaaaacacaagagaagatgctaagaacaagcctgaggaagaaaatgccgagagcaaggga
tgcaccaacaaaccggatggaatcacagaggactgcaagtcagataagcctccggaggat
gctgactgtgtgaacaagtcgtctgttactcgcacagaggcgagctcgacttcaaacagt
gagggagactccagaagggatgcggctgaaatgattccagaggtgccatcagttggagag
gacttagaaaaaagtactgtggaagcagcttcaaaggagcccttagctgcgaatgaaaac
acctcagctgtcagcaccagttctacttccagtgacatcatttctggaacgccccagcct
gcgagccggcgacagtcttttattaccttggagaaatttggtagttcagagagcagaccc
ttcagcctttccgccttcagcagtttgtcagagacacctggaagcgtgtcggtggcaggc
aaacaggaaaatacaactgcctgcaaggctggcactaacccagaaaaacctggagaagga
aataaaaagccttcaaaggctgaatctgaacaaatatttaccgcaatccgaaggctaacg
cgcaggcagggtaaaacagaccaccgaggaaacaagcagtccaaactgtcagctaggtca
gagcaagagaaaagcacacaggggtctcttgatttgagcagtgtggaagatagtcctgaa
ctgtgttcaggagaaagtgtggaacacgttctccttgctcagtctgaggctgtccattct
acagaagcagaaatgaaaaaagctgaagatgcagaaacagagaagtcccaggtgttagat
atggattctaaagaaaatacaccccctgagaggactgtctcgcctgaccaggttgcaggc
agcgacagccaggtgccacacgtgtctcctcatcagaaaacactgagacgttcttccagg
cgtcagtcagaaggtgtggaaagcccagcaggcagtcaagagaaggaggatggccaccaa
aagacagacaggcataaagatgatgaaaaatccaggccgaagaaggtgccacagactaaa
gatgatgcatcccaaaagcagaaggtttctgggaaaactgcagagaacacaaataaaaaa
gaaagcagcgtccccgagagaaccaccacggaggacctgagcgcaaaggagcctcctgct
gcaagggaccttgaagaagagaacaggagcgctcggaagtcggaagataacttgaagacc
gacacagaagggcaagactgcagcacaaacgcggtaggtcagaagaaggttgagcgccct
cgataccacacaaggaggtcttcacaaggattgctttccagtatagagaactccgagggt
gatggctctgagaccaaggaagaaagcacaaggaagaaaagatccgtaaaagcaaaaaat
agaaccagttcccttggaggtaaatcgaaagatcggcagccaggaagccgtagccatgaa
gggtctggccaaggaaacgaaactaagaatctgcaggcaacaaataaagatgaactaagc
catgacatcagcacagatgctgcgctgccatctgaagtgtgtgaccaggaaacccaggta
acatctccagatgccatcaaagcggtgggagccaccagctcgaagatatcgcctgatgca
caaagcacagatggggaacaagagagtaatacaccgatggagttgttcaccagcccaggt
gtatctgaccaaggtttgaaagcagcagaggaaaacaaacatgttgagaagcaaatagac
agcaaagatggtcgcccagctgttctgcctgaaggtgtaccaggagcaaaggcttcaggt
ggagatctttcctcttcacaaacagctgagtgtcagcacaaaagaagcaaaagactgaaa
agaccaaggagctgtgactgctgttctcaaaagtccaagcagccattaagatcattaact
gaatccagaaacaagagcagtcatgaactaaatgagagcagtcgtgaactgaacgagcct
caaaccagcccagttcaggtgactgaaaatttgtcagaggtgtctggaaattcaaatctt
gatgagagcttgtccatggcaccctgtgcaatgagcacgccgttgcagcctcctaaggag
ccaagtgcatttaacttggaaggagagagaacatcggaagatgctgcgcaaggaaacagt
ggtgcagtggaggaggatctggagaatccagagttcacagcgcacgaaggtagtgactct
gtagcggcagtgacagaacctgctggtcagagtgaccagactgaacagagtctgcccgag
tgtgtttcggatgagcctggtgacggctctctggctgcagagaatcgaagtgaagaaccg
gcagctatggaggaggaaggaatcagccagaatggacaattggaggagatacctgaggca
ccagtggttgttagcaaaactgaggaaaaacaggaggatgagctagaaagcagccaggat
gataaagcagcagatgagaactctgcaggatcaacttacattattcaagaggaagaggtg
aaggaggaattagtggagactgaaattacagtgcctgaaaacgtgcccttggacaaagaa
gatgcagtagaaaataacagtgtcaattcacctcaaaagccagaccatgattctttcgtg
tcagtcaatgagagccccaacagcatgcaggcgcgctgcatctggtctccctcagcttct
ccatccacgagcattttaaagagaggggtcaaaaggaaccaggatgatgattccctgtca
cctgctaataagatccgtcgagtctcttttgcgaaccctatttatcaagaaggcctggca
gatgacattgataggagaagccctgtcattagagcccattcttcttcaccttcttcacga
agtctaaaaattctatctaacattcaggctaagcatattaccactccaaccaaaggattt
ctgtcctctggatctcgtaacgctagatttaagagctcaaagaagtgtttaattacggaa
atggctaaggaattgctgccttgccctacagaatgcgtgtatcctgccttagccggctgc
aaggcaccggttgatgtgattctgcctcagatcacatcaagcatatggtccagaggcttg
gggcagctcatccgagccaagaacatcaagaccgtgggtgacctgagcgctttgacagca
tcggaaatcaaaacccttcccatccgctctcccaaagtgtgcaatgttaaaaaggctctg
agaggatttcatgagcagcaggtaaaatctcgaggatttgaggaaatagcagcacttgaa
gatgcagaaaagccagaggataaatctccttctgcagatgaagaaaaacttgcaacagat
ctgacagaaccggttgtggtgaccatgactgacccgcccactgtggatctcctgagccag
atggatgccctggcggctcagcttacctctgaagatcttcacagctactcgggaagccaa
ctctttgagatgcaagagaaactccttgtcatgacaaactgtgtcatgaaaaccctgcag
gcccgctggaaatcgccaccccatgacacttctgactag

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