Cuculus canorus (common cuckoo): 104056363
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Entry
104056363 CDS
T08597
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cuca03016
]
104056363 (RTCB)
Enzymes [BR:
cuca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
104056363 (RTCB)
Transfer RNA biogenesis [BR:
cuca03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
104056363 (RTCB)
Prokaryotic type
tRNA splicing ligases
104056363 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
104056363
NCBI-ProteinID:
XP_053912266
LinkDB
All DBs
Position
1:145875083..145886833
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMHVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDEIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
AEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagctgcagtacctggacaagatcgacaagaactgctgg
cggatcaagaagggcttcgtgcccaacatgcacgtggagggtgttttctacgtgaacgac
ccactggagaagctgatgttcgaggagctgcgcaacgcctgccgcggcggaggtgcgggt
ggctttttgcctgctatgaaacagattgggaatgtggctgcattacctggcattgttcac
agatcaataggcctgcccgatgtccattctggctacgggtttgccattggcaacatggct
gcctttgatatgaatgatcccgaagcagtggtttcaccaggtggtgtcggatttgacatc
aactgtggtgtccgcctactgcgtacaaatttggatgaaagcgatgtgcagcctgtgaag
gagcagctcgcccaggctatgtttgaccacattcctgttggtgtcggctccaaaggtgtc
atccccatgaatgctaaggatttggaagaggcactagagatgggtgtggactggtctctc
cgggaaggctatgcatgggctgaggacaaggagcactgtgaggaatatggaagaatgctg
caggctgaccccaacaaggtctcctcaagagccaagaagaggggcctgcctcagctgggg
actctgggagccggaaatcattacgctgagatccaggttgtggatgagatttacaacgaa
tacgctgccaggaagatgggcattgaccataaagggcaggtgtgcgtgatgatccacagt
ggcagcagaggcctgggccaccaggttgccacagatgcattggtggctatggaaaaagct
atgaaacgggataaaatcatagtgaatgatcgccagctggcatgtgccaggattgcctct
gcagagggacaggattacttgaagggaatggcagctgctggaaactatgcatgggtcaac
cgctcttctatgacttttctaacaagacaggccttcgccaaagtcttcaacacaacccca
gatgaccttgatatgcatgttatctatgatgtgtctcacaacattgccaaagtggagcaa
catgtagtggatggaaaagagcggactctgctggtgcacagaaagggatcaaccagggcc
ttccctcctcaccatcctcttatcgctgtcgactatcaactcactggacagcctgttttg
atcggcgggactatgggcacctgtagctatgttcttactggcacagagcaaggcatgact
gagaccttcggaactacttgccatggagctggtcgtgcactgtctcgagccaaatcacgg
cgtaacttggacttccaggatgtgttggacaagctggctgatatgggcattgccatccgt
gtggcttctcccaaactggtcatggaagaagcaccagagtcttacaagaatgtgacagac
gtggttaacacctgccatgcagctggtatcagcaagaaagccattaaactgagacctatt
gctgttataaaaggctaa
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