Cuculus canorus (common cuckoo): 104056425
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Entry
104056425 CDS
T08597
Symbol
XRCC5
Name
(RefSeq) X-ray repair cross-complementing protein 5 isoform X1
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104056425 (XRCC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cuca03400
]
104056425 (XRCC5)
DNA repair and recombination proteins [BR:
cuca03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
104056425 (XRCC5)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_N
Ku_PK_bind
Ku_C
VWA_2
VWA
DUF6005
Motif
Other DBs
NCBI-GeneID:
104056425
NCBI-ProteinID:
XP_053926289
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All DBs
Position
6:16099904..16151517
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AA seq
732 aa
AA seq
DB search
MARGGKAAIVLCLDVGFTMSNSASGEESSLEQAKKVMTKFVQRQVFAESRDEVAVVLFGT
DGTRNDLASEDQYQNITVHRSLMLPDFDLLEDVQDLIKPGTEQADFLDAIIVCMDLLQKE
TIGKKYEKRHIELFTDLSSPVSDDQLEIIVDNLKKTGISLQFFLPFPADADDGGGDTSGT
VRTQMQRNSFPRKGLTTQQKEGIGVVRKLMHTLDEEGGLEEIYTFRESLERLSMFKKIER
RPMAWPCQLTIGSNLSIRIVAYKSVTEEKVKKVWTVVDAKTLRKEDVQKETVYCLNDDDE
TEVQKDDTIQGFRYGSDIVPFSKEDEEQMKYKTEAKCFSVLGFSRSSQIQRHYYMGNQVL
KVFAAKDDENAAVAFSALVHALDELKVVAIVRYAYDRRCNPQIGVAFPFIKDAYECLIYV
QLPFMEDLRQYIFSSLKNNKKFTPTADQLSAVDSLIDSMNLVYEDGDGGSFEDLFKPSKI
PNPHFQRLYQCLQHKAFHPNDPLPPIEQHLLEMLEMPCVVKERCQAPLEKVKALFPLKEV
GNKKEEKTAQDIFKDNSEDGPKPKKPKIEDEEGSFSIMKLAEGNVTSVGSVNPAEDFRIL
VRQKNADFRDVSQQLINRIDQFLENKGSQYYMKGINCIRAFREEALKLSKVQCFNDFLQA
LKSKAEDKALVDFWEIMIQDRISLITKDEAEGSSVTSEEAEKFLAPKEKKNETLPPTDEG
GDVDDLVSAIKT
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcggcgggaaggcagccatagtgctgtgcctggatgttggctttacgatgagc
aattctgcctctggtgaggagtcttcacttgagcaagccaagaaggttatgacaaagttt
gtacagcgacaggtttttgctgagagtagagatgaagttgctgtagttttgtttggcaca
gatggcacaaggaatgaccttgccagtgaggatcagtaccaaaacattactgtacatagg
tcactaatgctaccagattttgatctgctggaagacgttcaagatttgattaaaccaggc
actgaacaagcagactttctggatgcaattattgtgtgtatggacttacttcagaaggaa
acaataggaaagaaatatgagaagagacacattgaactgtttacagaccttagcagtcct
gtcagtgacgatcagctggagattatcgttgataacttgaagaaaacgggaatttcactt
cagttttttctgccatttccagcggatgctgatgatggaggtggagatacaagtggtact
gtacgtactcaaatgcagagaaactcttttccaaggaagggtttaactacgcagcagaag
gaaggtattggtgtggtgaggaaactgatgcatactttggatgaagaaggagggctggaa
gaaatttatactttcagagagagcctggagcgtctttcaatgtttaagaaaatagaaaga
aggcctatggcttggccctgccagcttacaattggttccaatttgtctataaggattgtg
gcctacaaatcagtcactgaagagaaggtgaaaaaagtttggacggttgtggatgctaaa
accctcagaaaagaagatgtgcaaaaagaaactgtttactgcttgaatgatgatgatgag
acggaggttcagaaagatgatactattcaagggtttcgctatgggagtgatatagttcct
ttttccaaggaagatgaagagcaaatgaaatacaaaacagaagcaaaatgtttttctgtt
ttgggattcagtagatcctctcagatccagaggcattactacatgggcaaccaggttctg
aaggtctttgcagcgaaagatgatgagaatgcagcagttgctttttctgcccttgttcat
gcattggatgaattgaaagtggtagctatagtgcgttatgcttatgatagaagatgcaac
ccgcagattggggtagcttttccatttattaaggatgcatacgagtgtctcatctacgtg
caactacccttcatggaagacttaagacaatacatattttcatccttgaaaaacaataaa
aaatttactcctacagccgatcagttatctgctgtcgactctttgattgattctatgaat
ttggtttatgaagatggtgatggaggatcttttgaggacctgtttaagcccagcaaaatc
ccaaaccctcattttcagaggttgtatcagtgtttgcagcataaggcttttcatcccaat
gacccattgccgccaattgaacagcaccttttagagatgctggagatgccttgtgtggta
aaagaaaggtgtcaggctcctcttgaaaaagtaaaagcacttttccccctgaaggaagtt
ggcaacaaaaaggaagagaagactgctcaagacatcttcaaagacaacagtgaagatgga
cccaagcctaagaaaccaaaaattgaagatgaggaaggtagctttagcatcatgaaactc
gctgaaggcaatgtcacctctgttggcagtgttaacccagcagaagatttccgaattctg
gtgaggcagaaaaatgctgacttcagagacgtgagtcagcagctgataaaccgcattgat
cagttcctggaaaataaagggtcacagtactacatgaaagggatcaattgtatcagagct
ttcagagaagaggcccttaagctgtccaaggtgcagtgctttaatgattttctgcaggcc
ctgaaatcaaaggcagaagataaagccttagttgatttctgggagatcatgatacaagac
agaatttctttgatcactaaagatgaagcagagggaagttctgtgactagtgaagaggct
gaaaagttcttggctccgaaagaaaagaagaatgaaactctgcctcccacagatgaaggt
ggtgatgttgatgacttggtgagtgccataaagacatag
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