Cuculus canorus (common cuckoo): 104056432
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Entry
104056432 CDS
T08597
Symbol
SPG11
Name
(RefSeq) spatacsin
KO
K19026
spatacsin
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cuca03400
]
104056432 (SPG11)
DNA repair and recombination proteins [BR:
cuca03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
104056432 (SPG11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Kbp-5
Motif
Other DBs
NCBI-GeneID:
104056432
NCBI-ProteinID:
XP_053933216
LinkDB
All DBs
Position
12:complement(944058..980006)
Genome browser
AA seq
2421 aa
AA seq
DB search
MAAAGQELWVLLAPLSGRDATRARLSMGQGALGTLLPHAGILLESLVPRGGGRARGSVLP
GAWADFMWENTGDDLQAGKTKILALSKSHELFIYEFTLEDGKYNPVSLHSYKEDTLKKLL
EVKNNSLSSVFTLRILSFEKNTCRLLLNKCVVVHLTFPGKDSPLETCDCFTLNLPPPVLE
RVTDVCFCRGILFLLDSAGWIYVFDSFDGANLAKVSVALCQGNVQDEDKCPATSSLLSGV
KVARDLSVAVVTTSSNYAVSVDLNRYFRQFPGHLLCKRHPESLPVKPPEGLDEDDLASSD
YSMEFLSLPFRTDRSWKAHLSSLCDVVRRRRPGSPDLVNNLNLPWYHFFTHLEDHNPEIC
EESEKMVAFVPRAATWAPSIPVQNNSSNLRDARQQWKQILTEAPQEVVKLECKLVTGATA
LFVVSTKEKGLTLALWDFESQEVTCYPCGQNSVPVDCSGEEPLCLLLTERGLYLVLFGLT
QEEFLNRLMIHGSAGVVESVCHLNRWERCSVPIHALEAGLENRQLDTVDFFLKSKESLFT
LPAPCSGPEQSAESTSQTYLKNLEELRPALNLLCSAIGQNESEPQNKHFSEQLLNLTLSF
LSKQLEEISVHTAEPDEFLQKSADILTDYIIKLRKFVRKYPRLQIDTVHIGSGLDENLPA
LEESPVWEKLTPEEVIAEAILSKKMPEAQAFFRMHQHPAQSLQELIQTGLNLVYDRLLKD
NTREASELLRNMGFDVKEELRKICFYTADKRVRDLLVKVLQEENYFSEKEKKMIDFVHQV
ESFYSESSQENKEIQSLSSFKTWRKEDDLSRQMAILDSLLNCDRHRVHNRRVRVVFDWAQ
GWDELTQEMILLPKRPRQELKTCNPAVLWMHLTAQHDWPNICAWIEECEPNQTLCGEATW
PPLTPDIIDRNTLCSSYMRNDILNKLARNGIFVCSELEDFDLLLQRLSYLGGVLQNPHPV
PKYSTAAGLDFHARFVLHCLEHNLQYLLFTYLDYYSLTPSNCPILDNKELHEAHPWFEFL
VQCRGVASNPRDPKMIFQASLANAQILIPSNQASVSSMLLEGRTLLALATTMYAPGGIDQ
VLQNEDMDRPIKKVDPQLLKMALTPYPKLKAALFPPYSSHGILPPDISLYHLMQSLVPFD
PTKLFGWQSTNTLAASDASSDFPHFSSPELVNKYAVMERLDFLYYLHHGRPSFAFGTFLV
QQLVKSKSPKQLIQQAGNQAYILALSFFSVPAVPAACVCFLELLGLDSLKLRVDIKVANV
IFSYRSRNEESQHNQIRESLVEKLTKSADGEKAAAEAVLLSLEEAFWDTVERQGVQKTSS
DSRRQWSLVMQFCKLHNIRRSTSYLKECAKCNDWLQFLTQAQLHSYQPDEVIPILQEFAP
ALQDHLMLALEKLPLLCPGPESPENSPARVLESKTTDGLFQILLRCQENASPSRFLLTEG
LREHAPVLSVLAACFPDANIVHCLCVWILTTVDDATRVEATNHIHSAAESHEWDLHDLSV
IWKIFLRKQKSKTLLNGFQLFLKDSPLLFILEMCELCMSSKKYSEAKTKLDKFQESLTKL
KTAEEPAASELPVQWLESQALFLLELMMQQCRTEYELRKLLQLFAAGDNLLLDGPYVKKL
CALSETLQDSSISINRSILTSYDMEMFRNECRSILEQLQEKGMFSQAREVAALAELPMDN
VVIQEVLRDLRRLRDIGQWHQNQTRTEFWKKCNDNFVKNSISSKAASDFFLNQATTVFES
LAHEKISSIMERHLLFTLAGHWLAKDVSVALHKLEEIEKQIWICRVAQRTLSTEGQGGKS
SFPSHIAMNGDLTFDNLAKEFSFSKLPALNTPKYLKLEGLELKESQKTLTDDEEESLKCQ
IGCLLDEGSVHEASRVCQYFQFYHRDVSLVLHCRALASGETDLERLHTDIQTLLAAKETS
GGSVLQQSRVSSASSLEDWTHLVAPSPDDQVVTSLKALIDECVHGRNYCRQVLCLYELSK
ELNCSYSEMSAHDPEKVLRAILLSRQPARCRTAQVFIATQGLQPETVAELVAEEIMQELL
ASSEGKGQKHISNPAAESEAFLQLAKLCQDHTLVGMKLLDKVSSVPCGELSCITELLILA
HNCFSLTCHMEGITRVLQAARLFTDEYLAPNEEYGLVVRLLTGIGRYNEMTYVFELLHQK
HYFEVLMRKKLDPSGTLKTALLDYIKRCRPGDSEKHNMIALCFSMCREIGENHEAAARIQ
LKLIESQPWEESLQDVANLKKLLMKALTLFIDAAESYSKDSCVRQALRCSRLTKLITLQL
HFLNTGQSTMLINLTRQNLMDSIVSLPRFYQAAIVAEAYEFVPDWAEVLYQQVIAKGDFA
YLEEFKQQRPLKPGIFEEIAKKVQHHSPTDTALKNLKKLLAYCEDIYTYYRLAYDNKFYD
VVNALLKDVQTGCCLNDLLSN
NT seq
7266 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggccgggcaggagttgtgggtgctgctggcgcctctctcggggcgggacgcg
acccgggcccggctgagtatggggcagggcgctctgggcaccctcctgccccatgctggg
atactcctggagtccctggtgccgcggggaggcggccgagctcggggcagcgtcctccca
ggagcctgggctgacttcatgtgggagaacaccggagatgatctgcaagcaggcaagaca
aaaatactggctcttagtaaaagtcatgaactgttcatctatgaattcactctagaagat
gggaaatacaacccagtttccctgcatagttataaggaagacacgcttaaaaagctcctt
gaagttaaaaacaatagtctgtcttcagttttcactctgaggatcctctcttttgaaaag
aacacatgcaggctgctgctcaataagtgtgttgttgtgcatctcacctttcctgggaaa
gactcgcccttagagacgtgcgactgctttaccctcaatttgcctccgccggttttggaa
agagtaacagatgtgtgcttctgccgggggatcctgttcctgttagacagtgccggctgg
atttatgtgtttgactcttttgatggtgcaaatctagcaaaggtcagcgtagcgctctgc
caggggaatgtgcaggatgaggacaagtgtccagccacctcgtcactactttctggggtt
aaagtggcgcgggatctcagtgtggcggtggtcaccacttcttccaactatgccgtctct
gtggatctgaacaggtacttcagacagttccctgggcatctgctctgtaagagacatcct
gaaagtcttccggtgaagcctcccgaagggctcgatgaggatgaccttgctagttcagac
tacagcatggagtttttgtcactgcctttccggactgacaggtcctggaaggcacattta
tcctcactgtgtgatgttgtaaggagaaggcgaccaggttctccagatttggtgaacaac
ttgaatttaccttggtatcatttttttacccatcttgaagatcataatcctgaaatctgt
gaagagtctgagaagatggtggcttttgttccacgggctgctacctgggctccttccata
ccagtacaaaacaacagttcaaacctcagggatgccagacagcagtggaaacaaatcctt
acagaagcaccacaagaagtggtgaaactggagtgtaaattggtcacgggagctacagcc
ctgtttgtggtatcaacgaaagagaaaggactgactcttgctctctgggacttcgagtca
caagaggtgacgtgttacccctgtggccagaacagcgttcctgtggattgcagtggggag
gaaccactctgtctcctgctaacagagcgtggtctctacttagttctgtttggtttaact
caagaagagtttctgaatagattgatgatccacggcagcgctggagtcgtagagtctgtt
tgtcatctcaacagatgggaacggtgttcagtcccaatacacgcattggaggcaggtttg
gaaaatcgtcagctggacacggtagacttctttttaaaaagcaaagaaagtctcttcact
ctgcctgccccctgctcaggacctgaacagtctgctgagagcacttcccagacgtacctg
aaaaatttggaagagctgaggccggctctaaacctgctttgctcagcaatcggacaaaat
gaatcagagcctcagaataagcacttttctgagcagctgctgaacctcacgttgagtttc
ctttccaagcaacttgaagaaatttctgtgcacacagcagaacctgatgaattcctgcag
aagagtgcagatattttaactgattacatcattaaacttagaaaatttgtgagaaaatac
ccccgactacagatagacactgtgcacattgggagtgggcttgatgaaaacctgcctgcg
ttagaggaaagccccgtgtgggaaaaactgaccccagaagaagtcatcgccgaggccatc
ttaagcaaaaaaatgcctgaggcccaggccttcttccgaatgcatcagcatcctgctcag
agtctccaagaactgattcaaaccggtttgaatctggtctatgaccgtctcctcaaggac
aataccagagaggcctcggagcttttgagaaatatgggctttgatgtgaaggaggaactg
cgtaagatctgtttctacacagctgataaacgcgtgcgcgatttattggtgaaagtttta
caagaagaaaattatttttctgaaaaagagaagaaaatgatagactttgtgcatcaggtt
gaaagcttttactcggaatcctcccaagaaaataaagagattcaatctctttccagtttc
aagacctggaggaaagaagatgacctttccagacagatggccattctagactccttgttg
aactgtgatagacatcgggttcacaatcggcgagtccgagtggtgtttgactgggctcag
gggtgggatgagcttacacaggagatgattcttctccccaaaagaccacgccaagaactc
aagacatgtaatcctgcggttctctggatgcacttgacagcccagcatgactggcctaac
atttgtgcatggattgaagagtgtgagcccaaccagacattgtgtggagaagctacctgg
ccccccctcactccggatattattgaccggaacacattgtgtagtagctatatgagaaat
gatatcttaaacaagctggctagaaacggaatctttgtctgttctgagctggaagatttt
gatcttctgctccagaggctgtcttacctcgggggagtgctgcaaaatcctcaccctgtt
ccaaaatacagcactgctgctggcttggacttccacgctcgttttgtccttcactgttta
gaacataatttgcagtatctgttattcacttacttggactattacagtttaacgccttca
aattgtcctattttggataacaaggaactgcatgaagcgcatccctggtttgagtttctt
gtgcagtgccgaggggttgccagtaatccacgagatccaaagatgatttttcaggctagt
ctagcaaacgctcagatcctgattcccagtaaccaagccagcgtgagtagcatgcttctg
gaaggacggacgctattggcacttgctactaccatgtatgcgcccgggggtatcgatcag
gttcttcagaatgaagatatggacagacctataaagaaagttgatccacagctcttaaaa
atggcattgactccttaccccaagctcaaagctgctctcttccccccctattcttctcat
ggaattttgccacctgacatctctctttaccatctcatgcagtcattagtgcccttcgat
cccactaaattatttggctggcagtcaacaaacactcttgctgcatcagatgcatcgagt
gacttccctcatttttcatcccctgaactggtgaacaaatacgctgtaatggaacggctg
gattttttgtactacttgcaccatggacgtccatcgtttgcttttggaacattcctggtc
cagcagttagtaaagagcaaatctcccaaacagctgattcaacaagcaggaaatcaagcc
tatattttggccctgtctttcttcagcgtgccggcagtcccagcagcctgcgtctgtttt
ctagagttgcttggtctcgacagcctcaaactcagggtcgatattaaagttgcaaatgta
attttcagctacagatctagaaatgaagaatctcagcacaatcaaataagagaatctttg
gttgaaaagttaacaaagtcggctgatggtgaaaaagcagcagcagaagcagttcttctc
tccttagaagaagccttttgggatacagttgagcgtcaaggagtacagaagacgtccagt
gactctagaagacagtggtctttggtcatgcagttctgtaaactccataatatcagacgg
agcacatcttacctaaaggaatgtgctaagtgtaacgactggctgcagttcctcacccaa
gcccagctgcacagctaccagccggatgaggtcattcctatcctccaagaatttgctcct
gctttacaagatcacttaatgttggcactggagaagttaccacttttgtgtcctggcccc
gagagtcctgaaaacagccctgccagggtgctcgagagcaaaaccacagacgggctcttt
caaattctccttcggtgtcaggagaacgccagcccttcccgtttccttctgactgaagga
ctgagagagcatgctcctgttctgagtgttctagcagcgtgtttcccggatgcaaatatt
gttcattgtctctgtgtctggatccttactactgtggatgatgccaccagagtcgaagca
acgaaccacattcacagcgcagcagaaagtcacgagtgggacctgcacgacctgtcagtc
atctggaaaatcttcttaagaaagcaaaaaagtaaaactcttctaaatggcttccagctc
ttcttaaaggactcgcctttactgttcatactggagatgtgtgagctatgtatgagctct
aaaaaatacagtgaagctaaaaccaaactggacaagtttcaggaaagtctcaccaaactg
aaaactgcggaggaaccagcagcgtcagaattaccggtgcagtggctggaatcccaagcg
ttgtttctgcttgagttgatgatgcagcaatgtaggacggagtacgaattaagaaagctc
ttacagctgtttgctgcaggggataatcttctactcgatggcccctacgtgaagaaactc
tgtgcgctcagtgagaccctgcaggattcctccatatcaatcaatcgctccatcctaacc
agttatgatatggagatgtttcggaatgagtgcagatcaattctggagcagctacaggag
aaaggaatgttctctcaggctcgggaggtagcagcgctggctgaactacccatggacaac
gtagttatccaagaggttctacgagatctccgtcggttgagagacatcggacagtggcat
caaaaccagacaaggactgaattctggaaaaagtgtaatgacaactttgtgaaaaactca
atctccagcaaagctgcatctgatttttttttaaatcaggcaaccacggtatttgaatct
ttagctcatgagaaaataagcagcatcatggagaggcatttattgtttaccctagctggc
cactggctcgccaaggatgtctcggtggcactgcacaaattagaagaaatagagaagcag
atctggatttgtcgcgttgcacagcgaacgctctccacagaagggcagggtggcaagtcg
agctttccctcccacattgcaatgaacggggatctcacctttgataacttagctaaggag
ttctctttttcaaagctacctgctctaaacacaccaaagtacttaaaactggaaggtctt
gaattgaaggaatctcagaagaccttgactgatgatgaggaggaatcgctcaagtgtcag
atcggctgccttctcgatgagggaagcgtacatgaagccagccgtgtttgccagtatttc
cagttctaccaccgagatgtttcactggtgttgcactgccgagctctggcttctggggag
accgacctagaaaggctgcacacggatattcagactcttcttgcagcaaaggagacctct
ggaggcagcgtgttgcagcaaagcagagtctcgagcgcctcaagcctagaagactggaca
caccttgtggctccatctcctgatgatcaggttgtgaccagtctgaaggctctcattgat
gaatgtgtccatgggcgaaactactgcagacaggttctctgtttgtatgaactttctaag
gaactgaactgctcctacagcgaaatgtcagcccacgaccctgaaaaagtgcttcgagcc
attctgttgtcccgacagccagcgaggtgcaggacagctcaggtgttcatcgccacacag
gggctgcagccggaaaccgtggcagagctggtggctgaagaaatcatgcaggaattactg
gcgtcttctgaagggaaaggacagaaacacatttcaaaccctgcagctgagagtgaggca
ttcctgcagctggctaagctgtgccaggaccatacactggttggcatgaagttactggat
aaagtttcctccgtaccatgtggcgagctgtcgtgcattacagaactgctgattttggcc
cataactgcttcagtctgacttgccacatggaaggaatcactagagtcctccaagcggca
cggctcttcactgatgaatatttggcaccaaatgaagagtatgggcttgtggttcgtctt
ctcactgggattggcagatacaatgaaatgacctacgtatttgagctgctgcatcagaaa
cactactttgaagtgctcatgaggaagaaattggacccaagcgggacgctgaagacggct
ctgctggattacatcaagcgctgtcgccccggggacagtgaaaagcacaacatgatagcc
ctgtgcttcagtatgtgtcgagaaatcggggagaaccacgaggctgctgctcgcatacaa
ctcaaactcatcgaatctcagccctgggaggagtctcttcaggatgttgccaatttaaag
aaactgctgatgaaagctctgactctctttattgatgcagcagaaagctattccaaggac
tcctgtgtccgccaggccttgcgctgcagccggctgaccaagctgataaccctgcagctg
cacttcctcaacactggccagagcaccatgctgatcaacctcaccaggcagaacctgatg
gactccatcgtctccttgcccagattctaccaggcggctattgtggccgaggcttacgag
tttgttccagactgggctgaagttctgtatcaacaagtgatcgctaagggagacttcgcc
tacttggaagaatttaaacaacaaagaccactgaagcctggcatttttgaagagattgct
aagaaagtccaacaccactcccctacggacactgctctgaagaacctgaagaagctgctg
gcttactgcgaggacatctatacctactaccgcctggcctatgataacaagttctacgat
gtggtaaacgcgctcctgaaggatgtgcagaccggctgctgcctcaacgatctgttatcc
aactag
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