Cuculus canorus (common cuckoo): 104056483
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Entry
104056483 CDS
T08597
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104056483 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuca03019
]
104056483 (PNLDC1)
Enzymes [BR:
cuca01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
104056483 (PNLDC1)
Messenger RNA biogenesis [BR:
cuca03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104056483 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
104056483
NCBI-ProteinID:
XP_053920003
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All DBs
Position
3:54591595..54621012
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AA seq
534 aa
AA seq
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MDVVGAEAFERRLPELRDRVRSAAFLALDLEFTGLHSDFPPNNKPSLFDSAAKRYLKERQ
SVQRFTVAQLGLATFTNENSNKYVVHSYNFFLFPSTLGGADVEFTLSASSIQFLSDYGFD
YNKFLKDGIPYMNEVQEENFSKHLFVGSWKASSAVDRDVLKKAIDEVTRWIVAAKEEETM
ILQDLSGYQVFEVQLVLRRALQNVWTEPLGDKKVLVKKVSPCNRQLLENSPYDCCQKKHI
LLSARGFTNLFQTIVEAKKPVVGHNMFMDLMHLHDKFYKPLPESYEEFKRNVHNLFPVLI
DTKTVTKSLWETCPFPPVSNLTEVYAALCSSSSLNSKDPTCPVIALASDCSRYAEKELPH
EAGYDAFLCGSVLLKSAYLLLCRSTDDAVEADPSFSQYLTVLAEYLNKVNFIRGGVSSIN
FSGEDAPCQYPPLLVVRVQGWPGVNEEQIYQEFKALCRFDVRRLSTNQFILLSNKFKQVR
LVLQDYKHHPHLRVSVYRRWRHSPGVNCLLQVSGIVALWSLLAFVFGRAPCCSL
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atggacgtagtgggggcggaggcgttcgagcggcgcctgccggagctgcgggaccgtgtc
cgcagcgccgccttcctggcccttgatctggaatttactggcttgcattcagatttccca
ccaaataacaagcccagcctgtttgattctgctgcgaagcgatacctgaaagagagacaa
agcgttcagcgcttcaccgttgctcagcttgggctggcaacattcacaaatgaaaattca
aacaagtatgtggtgcattcatacaacttttttctctttccctcaacactgggaggtgca
gatgtcgaattcaccctctctgcatctagcattcagttcctgtctgattatggctttgac
tataataagttcctcaaagatggaatcccatacatgaatgaggtacaggaggagaacttt
agcaagcatctcttcgtgggtagctggaaagccagcagtgctgtggacagggatgtactg
aagaaggctattgatgaagtgactcgttggatagttgcagcaaaggaagaggagactatg
atcctgcaggatctgagcggctaccaggtgtttgaagttcagctggttctgagacgggct
ctccaaaatgtttggacagagcctcttggggacaagaaggtactggtgaaaaaagtgagt
ccttgtaatcgacagcttctggagaactctccttatgactgctgccagaagaagcacatt
cttctgtctgcccggggcttcaccaacctcttccagacaattgttgaagccaagaagccc
gtggtgggacacaacatgtttatggaccttatgcatcttcatgacaagttctacaagccc
ctcccagaaagctatgaggagtttaaaaggaacgttcacaacctgtttcctgtcctcata
gacaccaagactgtaacaaaatccctctgggagacatgtccgtttcctccagtatctaat
cttacggaggtgtatgcagctttgtgcagcagcagcagcctaaattccaaagatccaacg
tgcccagtgatagctcttgcaagtgactgctcaagatatgctgagaaggaattgcctcat
gaggcaggctatgatgcatttctctgcggttcagttcttctgaagtcagcttatttgcta
ctgtgcagatccacggacgatgcagtggaggctgatccttctttctctcagtatctcacc
gtgttagccgagtatctgaacaaagtgaatttcatccgaggtggtgtttccagcattaat
ttttctggagaagatgctccctgccaatatcctcctctcttggttgtccgtgtccaaggc
tggccaggtgtgaatgaagagcagatttaccaagagtttaaagctctctgtcgcttcgat
gtcagaaggctttcaaccaaccagttcattctgctctccaataaatttaagcaagtcagg
cttgttctgcaagattataagcatcaccctcatctgcgggtttctgtgtatcgccgctgg
aggcactctccgggtgtgaactgcctgctgcaagtctctggtattgtggcactgtggtct
ctcttggcctttgtattcggaagagctccttgctgttctttgtaa
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