Cuculus canorus (common cuckoo): 104056578
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Entry
104056578 CDS
T08597
Symbol
VCP
Name
(RefSeq) transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca04137
Mitophagy - animal
cuca04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
104056578 (VCP)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
104056578 (VCP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuca03019
]
104056578 (VCP)
03009 Ribosome biogenesis [BR:
cuca03009
]
104056578 (VCP)
04131 Membrane trafficking [BR:
cuca04131
]
104056578 (VCP)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cuca04147
]
104056578 (VCP)
Messenger RNA biogenesis [BR:
cuca03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
104056578 (VCP)
Ribosome biogenesis [BR:
cuca03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
104056578 (VCP)
Membrane trafficking [BR:
cuca04131
]
SNARE
SNARE associated proteins
Others
104056578 (VCP)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
104056578 (VCP)
Exosome [BR:
cuca04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
104056578 (VCP)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
AAA_22
TIP49
AAA_14
NPHP3_N
RNA_helicase
Vps4_C
AAA_28
nSTAND3
Parvo_NS1
Mg_chelatase
AAA_17
IstB_IS21
ATPase_2
AAA_18
AAA_7
ATPase
DUF815
ABC_tran
AAA_24
TsaE
NB-ARC
ResIII
Viral_helicase1
NACHT
Sigma54_activat
SLFN-g3_helicase
KAP_NTPase
Zot
DUF3944
Motif
Other DBs
NCBI-GeneID:
104056578
NCBI-ProteinID:
XP_053910395
LinkDB
All DBs
Position
Z:68104143..68128261
Genome browser
AA seq
806 aa
AA seq
DB search
MASGSDSKADDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQAKMDELQLFRGDTVLLK
GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV
INQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN
LRKSPVAKDVDLDFLAKMTNGFSGADLTEICQRACKLAIRESIESEIKRERERQTNPSAM
EVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSGNQGG
AGPSQGTGGGSGGNVYSEDNDDDLYG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgggatccgattccaaagcggatgacttatcgactgctattctgaagcagaag
aacaggcccaatcggttaattgttgatgaagccatcaatgaagataacagtgttgtgtca
ctgtcccaggcaaaaatggacgagttgcagctgttcagaggagacactgtcctgctaaaa
ggaaagaagaggagggaagcggtctgcattgttctgtcagacgatacctgctcagatgag
aagattcgcatgaacagggttgtgcgcaacaacctgagagtgcgcctgggtgatgtgatc
agcatccagccttgcccagatgtgaaatatggcaaacgtatccacgtgctgccaattgat
gacacagtagaagggatcacggggaatctgttcgaggtgtatctcaagccatacttcctg
gaggcatacagacccatcaggaaaggtgacatcttcctggtgcgtggagggatgcgtgca
gtggagttcaaagtggtggagacagatccgagtccctactgcatagttgctccagacacg
gtgatccattgtgaaggagagcccatcaaacgagaggatgaagaggagtcactgaatgaa
gtgggctatgatgacattggtggctgccggaagcaactagctcaaatcaaagagatggtg
gagcttcccctccgacaccctgcactcttcaaggccatcggggtgaagcctcctcgtggg
atcctactgtatggtcctcctggcactggtaaaacactgattgctcgagcagtggccaat
gaaacaggggctttcttcttcctgatcaatggtcctgagatcatgagcaagctggctggt
gagtctgagagtaacctgaggaaagcctttgaggaagcagagaagaatgctcctgccatc
atcttcattgatgaactggatgccattgctcccaagagagagaagacacacggagaggtg
gaacgtcgcatcgtgtctcagctgttgactcttatggatgggctgaaacagagagcacat
gtgattgtgatggcagctaccaacagacctaacagcattgacccggcactcaggcgattc
ggtcgctttgacagagaggtagatattggtatcccggatgccaccgggcgcctggagatc
ctgcagatccacacaaaaaacatgaaactggctgatgatgtggatctggaacaggtggca
aacgagacccatggccatgttggtgctgacttggctgctctttgctcagaagctgctctt
caggctatcagaaagaagatggatctcatagacttagaagatgaaaccattgatgctgaa
gtgatgaactcgctggctgtgaccatggatgactttaggtgggctctgagccagagcaac
ccttctgctctccgggagactgtggtggaggtgccacaggttacctgggaagatattggt
ggtctagaagatgtaaagagagaactccaggagcttgtacagtatcctgtggagcacccg
gacaagttcctcaagtttggtatgaccccatcgaaaggggtgctgttctacgggccccct
ggttgtggaaagacgctgctggccaaagccattgccaatgaatgccaggcaaacttcatt
tccatcaaggggccggaattgctcaccatgtggtttggtgagtctgaagccaatgtgcgc
gagatctttgacaaggcccgccaggcagccccttgtgtgctcttctttgatgagctggac
tccattgcaaaggctcgaggtgggaatatcggcgatggtggtggtgccgcggaccgtgtc
atcaaccagatcctgacagagatggatggcatgtccaccaagaagaacgtcttcatcatt
ggtgccaccaacaggccagacatcattgacccggccatcttgcgccctggccgcctggat
cagctcatctacatcccactgcctgatgagaagtctcgggttgctatccttaaagccaac
ctgaggaaatcaccagttgccaaggatgttgacctggatttcttagccaagatgaccaat
ggcttttctggggctgacctgacagaaatttgccagcgtgcctgcaaactggccatccgc
gagtctattgagagcgagatcaagcgagaacgcgagaggcagaccaatccttctgccatg
gaagtggaggaggatgacccagttcctgagatacgcagggatcactttgaggaggccatg
cgctttgctcgccgctctgtcagcgacaatgacatcaggaaatatgagatgtttgcacag
actctacagcagagccgtggcttcggcagcttcaggttcccatctggaaaccaaggcggt
gccggcccgagccaaggcacaggaggtggcagtgggggcaacgtgtacagtgaagacaac
gatgacgatctctacggttaa
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