Cuculus canorus (common cuckoo): 104056591
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Entry
104056591 CDS
T08597
Symbol
TAF1C
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cuca03021
]
104056591 (TAF1C)
Transcription machinery [BR:
cuca03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
104056591 (TAF1C)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
TAF1C_C
Rrn6_K-rich
Motif
Other DBs
NCBI-GeneID:
104056591
NCBI-ProteinID:
XP_053910899
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All DBs
Position
Z:complement(67449295..67454215)
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AA seq
928 aa
AA seq
DB search
MEFPATLFPSSFSTGPPRDEGGPAPAAGWGEYGQVLEAGRGHHQAETRFVPRHGRTGESW
EPADVAAVPFLPPNATCWLPLLAPQDILYRSFLHRKLQASISGPAVDFTKQLSHFFVDHP
EDAFGSLGCLLHKNFHLGDSGVKREARDNTIRMTALMEEINRLDARRGCPQKYLASRLRW
FSHLSRDWLFEVPIGLLADCVHEELLLQWAGLLFDDGPTGGALAWLPAEDTGARTGRLVY
PGGQAMNHLYFQDVVLKELPSARGSPAEFELNGRIRQVAAARTNGEDFVGVRSDYHCGIW
RVPGRTGAAPTPLQVIRTSMPASCLTVSPHIPGELAVCTQSGSTYLWNIEKGLQRLRHDS
QTMFFRDHSPWRWCDFTAHPRVLSCADRTGLQCLDARAPERCQLDLFKVGEEASCQQGER
VVLPMYLGRAHPSQHLVTTQFSMYVVDERLPLVPVLKWLHMMKAPPLFAHLTPGDPGRSH
KLLLGASRTQEMMLLQYQGGGQLACRLVGPPQKLHTITGCLEHFPTQLPHRHCLLQQRLG
IPAAGLAAVLQKHGPRESLLVFQLSEAGDIFCQRLTHEVAQPLARTSGDKPTAAPGSSPL
FEDPASSPQHLGSEEEKEEEEEDEQTSYLSNLEVMINEEEDGGRPAFLEEAELTQEPCAS
PQPSPVVLSEAVALRYRRWLKALSKRCGEPPWPSCPTTCGQKRLFTREELQTQAGPSILH
QQARQRMHQAMREGGRIQCWDLLDSQSSAILKPPEPVEGPDSLSARLTAAWSGDWSQWWE
ERTSFYRTQRQRALRERRRRQKRARGRRSLSASFTSSLTYQSELSELSDTGLPPLSPTPP
QEGFPPRGSPPPSPVPDEALLSSQSLRIRGIPKERRKTLRDYLGVWTESPLEPPELPSSQ
VSQLCIPSSQSQLSSASQTRRKRPRMGF
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggagttcccggccactctcttcccctcctccttcagcaccggcccaccccgggacgag
gggggccctgctccggccgctggttggggcgagtatgggcaagtgctggaagccggccgc
ggccaccaccaggctgagacaagatttgtgccccgccatggcagaactggcgaaagctgg
gaacccgctgatgttgctgctgtgcccttcctgcctcccaatgcaacctgctggcttcct
ttgcttgcgcctcaggacatcctttaccgcagctttctgcacagaaagctccaggcaagc
atctctggaccggctgtggatttcacgaagcagctgagccacttctttgtggatcaccca
gaagacgcgtttggctccctggggtgcctgctccacaagaacttccacctgggtgactcc
ggtgtgaagagagaagctcgggacaacaccatccggatgacggccctcatggaagaaatc
aaccgtctggacgccaggcgtggctgcccccagaagtatctggcctcccgcctgcgctgg
ttctcccatctgtcccgtgactggctcttcgaggtgccaatagggctgctggcagactgc
gtgcatgaggagctgctgctgcagtgggccggcctgctcttcgatgatggtcctactgga
ggggcactggcctggctgcctgctgaagacacaggagcacgcacaggccgcctggtgtac
cctggagggcaggccatgaaccatctctatttccaggacgtggtgctgaaggagttgccc
agtgcacgaggctcccctgcagagtttgagctcaatgggcgcattcggcaagtagctgct
gcccggaccaacggggaagattttgttggcgtccgctcagactatcactgtggcatttgg
agggtgccaggcaggacaggggcagcccccaccccactgcaggtcatccgcaccagcatg
cctgcctcctgcctcactgtcagccctcacatccctggggagctagctgtctgcacccaa
agtggatctacctacctctggaacatcgagaaggggctgcagcggctccgtcatgactcc
cagaccatgttttttcgggaccattcgccctggcgttggtgtgacttcactgcccaccca
cgggtgctgagctgtgccgaccgcaccggcctgcagtgcctggatgctcgggcccctgag
aggtgccagttagacttgttcaaggtgggcgaggaagccagctgccagcagggtgagcgt
gtggtgctgcccatgtacctgggcagggctcacccctcccaacaccttgtcaccacccag
ttctccatgtacgtggtagacgagcggttgccgctggtgcctgtgttgaagtggctgcac
atgatgaaggccccccctctcttcgcccacctgacaccaggggaccctggaaggagccat
aaactgctgcttggcgcatcccgcacccaggagatgatgctgctgcagtaccagggaggt
ggccaattggcctgccggctggtgggacctccacagaagctgcacaccatcaccggctgc
ctggagcactttcccacccagctcccacaccgccactgcctcctccagcagcgccttggc
atcccagctgccgggctggctgctgtgctgcagaagcatgggccacgggaatccctgctg
gttttccagctctccgaggctggggacatcttctgccagaggctgacccatgaggtggct
caacccctggcacgcacctcaggggacaagcccacagcagcccctggctcttcgccgctc
ttcgaggatccagccagcagcccacagcacttgggcagcgaggaagaaaaagaagaggaa
gaagaggatgaacaaacctcctacttgtccaacctggaagtgatgatcaacgaggaggag
gacgggggcagaccagcattcctggaggaagctgaactgacccaggagccctgcgccagc
ccccagccttccccagtggtgttgagcgaggctgtagccctgcggtaccgccgctggctg
aaggccctttccaagcgctgtggggagcctccctggccctcctgtcctactacctgtggc
cagaagcgcctcttcacccgtgaagagctgcagacacaggcgggacccagcattctgcac
cagcaggcacggcagcggatgcaccaggccatgcgggaggggggccgcatccaatgctgg
gacctcctggacagccaaagttctgccatcctgaagccgccagagccagtggagggtcca
gactccttgagcgcccgtctgacggcggcgtggtctggggactggagccagtggtgggaa
gagaggacgagcttctacaggacacagaggcagcgggcactgcgggagcggcggcggcgg
cagaagcgagcccgtggccggcgcagcctttcagccagcttcacctcttccctcacctac
cagtcagagctgtctgagctgagcgacactggtctgccgccgctctcccccacgcctcct
caggagggcttcccaccaagaggcagccccccaccatcaccagtgcccgacgaagccctg
ctctcctcacagagcctgcgcatccgtggcatccctaaagagcgtcgaaagacgctgcgg
gactacttgggggtatggactgagagtccccttgagccaccagagctccctagcagccag
gttagccagctctgcataccctcgtcccagagtcagctctcctctgcttcccagacccgc
cgcaagcgcccacgcatgggcttctga
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