Cuculus canorus (common cuckoo): 104056673
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Entry
104056673 CDS
T08597
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A
KO
K14328
regulator of nonsense transcripts 3
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03013
Nucleocytoplasmic transport
cuca03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104056673 (UPF3A)
03015 mRNA surveillance pathway
104056673 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuca03019
]
104056673 (UPF3A)
Messenger RNA biogenesis [BR:
cuca03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104056673 (UPF3A)
mRNA cycle factors
P-body specific factors
104056673 (UPF3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
104056673
NCBI-ProteinID:
XP_053915282
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All DBs
Position
1:63601622..63630930
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AA seq
514 aa
AA seq
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MQYSSLTPGLAAAEHVGPPPSSRETPRGRARLRWEREAGLGLMRGGGGGREKWLMDIPLR
RESPHRDTDAPANPPAAPPPRPREEKKAVLSKVVIRRLPPCLTKEQLEEQLHPLPAYDYF
EFCTADPSLYPHLYSRAYINFRNPEDILLFRDRFDGYVFIDNKGLEYPAVVEFAPFQKIS
KKKLKKKDAKAGSIEDDPEYRKFLESYCADEEKICANPEILLGEIEAKTRELIARRTTPL
LEYIKNRKLEKQRIREEKREERRRRELEKKRLREEEKRKRREEERRKRKEVEKQKKISEK
EIRIKLLKKPEKGDELTSEKNKEKGEEADIEENKWDKSPGSGSLKSKSLEGSLKEVKEKS
QNDSDKEQRDLERRFREKEPERQRYRLDDGRKHRAHYEVDKFVRRNEEELKWGKGYNQDR
GKKGNYNYSFTVEAVDKLGKEDKCDDMASKKERIRNKDRPAMQLYQPGARIRTHTGSTSK
TYDCSGKSFEDALDKKYEADNSAGGGSEKSEEVE
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgcagtactccagcctcacaccgggtctcgctgccgcggagcacgtggggccgcccccg
agttctcgcgagaccccgcggggccgggcccgcctgcggtgggagcgggaggccgggctg
gggctgatgcggggaggaggtggcggccgcgagaagtggctgatggatatcccgctgcgg
cgggagtcgccgcaccgcgacacggatgctccggccaacccgcccgcggcgccgccgccg
agaccgcgggaggagaaaaaggcggtgctgagcaaagtggttattcgacggcttcctcct
tgcctaactaaggagcaactggaggaacagctacatcctctacctgcctatgattatttt
gagttttgcactgctgatcccagcctttatcctcatctctactcaagagcatacattaac
tttagaaaccctgaggacatccttctttttagagatcgctttgatggctatgtcttcatt
gataataaaggtctggagtatcctgcggtggttgaatttgctccattccagaagatttca
aagaagaagctgaagaagaaagatgccaaagctgggagcattgaagatgatccagaatat
aggaaatttttagagagttattgtgctgatgaagagaaaatctgtgccaatcctgagatt
cttttgggagagattgaggccaaaacaagggaactcattgctagaagaacaacacctctt
ttggaatatattaaaaatagaaaattagaaaagcagagaatacgagaagaaaaaagagaa
gaacgaaggcggagagaattggagaagaagcgcctgcgggaggaagagaagaggaagcgc
agagaagaagaaagacgtaaaagaaaagaagtagagaagcaaaagaagatttctgaaaaa
gaaataaggatcaagcttcttaagaagcctgagaaaggagatgagctgaccagtgaaaag
aacaaagagaaaggtgaagaagctgacattgaagaaaacaagtgggataaatcacctgga
tctgggagtttaaaatccaaatcattggagggttcactaaaagaagttaaggaaaagtca
caaaatgatagtgacaaagagcaaagagatttggagagaagatttcgagaaaaagaacct
gaaagacaaaggtatcgattggatgatggcagaaagcatagagctcactatgaggttgac
aagtttgtgagaaggaatgaagaagagctgaaatgggggaaaggatacaaccaagacaga
ggaaagaaagggaactacaactacagcttcactgtggaggcagtagacaaactgggtaaa
gaggacaagtgtgatgacatggcatccaaaaaggagcgcataagaaataaggatcgccca
gccatgcagttgtaccagccaggagctcgcattcggacacatacgggatctacgagtaaa
acctatgactgcagtgggaaatcctttgaagatgctcttgataagaagtatgaggcagat
aactcagctggcggcggttctgagaagagcgaagaagtggaataa
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