Cuculus canorus (common cuckoo): 104056919
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Entry
104056919 CDS
T08597
Symbol
ABCA5
Name
(RefSeq) cholesterol transporter ABCA5 isoform X1
KO
K05648
ATP-binding cassette, subfamily A (ABC1), member 5
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
104056919 (ABCA5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cuca02000
]
104056919 (ABCA5)
Transporters [BR:
cuca02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA5, 6, 8, 9, 10 subgroups
104056919 (ABCA5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
RsgA_GTPase
AAA_29
NB-ARC
AAA_16
MMR_HSR1
AAA_23
nSTAND3
Dynamin_N
Rad17
Motif
Other DBs
NCBI-GeneID:
104056919
NCBI-ProteinID:
XP_053939137
LinkDB
All DBs
Position
18:complement(4934868..4972383)
Genome browser
AA seq
1648 aa
AA seq
DB search
MAPATPKEAGVWRQTKALLFKNCLIKCRTKKSSVQEVLFPLFFLFWLILMSMMHPHRKYD
EVANTNLGTLDTSMLVNFVIGYTPPTRMAREIMKKVAFDNFEDGLITEEYLSEEELQEAS
AFKPSNFVGVVFNDAMSYQLRFPDLVAMVTYMESRASCSNLRKGCESVTYWSSGFTALQA
CIDAAIIQLKTNHSVWEQLELTRAVVMGEAAVVEIDNFPRAIILIYLVIAFSPFGYYLAI
HIVAEKERKLKEFLKILGLHDTAFWLSWVLLYMSLIFVMSILMAVIATASSLFPQSSAFV
IFLLFFLYGISSVFFALMLTPLFKKSKHVGIVEFLATLTFGFVGLNIVLLEDFPKSFVWI
LSPLCQCSFLIGVAQVMHLEDYKDGATFANLNDGPYPLFISLILLMLDSIFYLLVAVYLD
QVIPGEFGLRRVPFFFMKPSFWSKRRKNYKELYESSVNGSLSFSEIVEPVPSEFQGKEAI
RISCVQKTFRKKGETVEALRNLSFDIYEGQITALLGHSGTGKTTLMNILCGLCPPTDGFV
SVYGHKVSEIDEMLEVRQIAGVCPQSDIHFDILTVEENLSIFAAIKGIPQNDLIQEVQKV
LLDLDIQPIRDNQAKKLSGGQKRRLSVGIAVLGNPKVLLLDEPTAGMDPCSRHIVWNLLK
NRKANRVTVFSTHFMDEADILADRKAVISQGMLKCLGSSLFLKSKWGIGYRLSMHIDAYC
NTEATTSLIRQHIPAASLIQENDEQLVYTLPLKDMDKFAGLFSDLDTHSHLGVITYGVSM
TTLEDVYLKLEVEAEIDQADYSVFNSQQVQDEMDTKSLDDMEQSLLMLSETKAPAMSNTA
LWKKQVSTVAKVHFLSLKRENKCVRVMLLLFLIFLVVQILFFFVHHIIKNSVAAIKLSPD
LYFLKPGEVYHKYRSRLLLQNSTGSDISDIVRSLGSMNILLEMFNDSDYVSAAPHSAALN
VIDLESSQNYVFTVIFNSTMVHSLPVLMNIVSNLLLRNLNVTESIQIWSNPFVQNLPDTI
FKLEIYFEAVLLGIIITGMPPYFAMDNAENHKIKAYTQLKIAGLYPSAYWTGQAVVDLPL
FFSILVLMIGSLFAFHYGVYFYVGKFIAVIFCLIGYVPSVVLFTYVVSFTFKKVQNTKEF
WSFIFSVTALLCTVVTEVAFFLDYYLVTTVLHYVFSIFIPIYPLIGCLICFIKVSWKSKR
KSGGYYDPWDRLLVAVIAPYLQCVVWLFLLRCFELKNGGRTVREDPFFRKCFTKARTWKF
PDVSHDENEDEDVKAERLRVQEILKSPKSEEMPAILVSSLHKEFDERKEFLLGRKIKKVA
TKHVSLCVKKGEILGLLGPNGAGKSTLINMLVGEIEPTSGQVLMGDYSFGLNSEDDSVKF
VGYCPQTNPLWPDITLQEHFEIYGAIKGMSQTDVKEVIKRSIASALDLKDHLQKTTKKLG
VGLKRKLCFALSMLGNPRVTLLDEPSTGMDPKAKQHMWRAIRAAFKNKERAAILTTHYME
EADAVCDRVAILVSGQLRCIGTVQHLKSKFGRGYFLEMKLKETADVQQVEFLQRQILHIF
PNANRQESFASILAYKIPKEDVQSLSHSFSKLEEVKHAFNIEEYSFSQATLEQVFVELAK
EQEEEDSSFGTFNSTLWWERTQEDRVIF
NT seq
4947 nt
NT seq
+upstream
nt +downstream
nt
atggcaccagcaactccaaaagaagcaggagtatggaggcaaaccaaagctctcctgttc
aagaactgtctcattaagtgtaggacgaaaaaaagcagcgttcaggaggtccttttccca
ctcttctttttgttttggctgattttgatgagcatgatgcatccgcacaggaaatacgat
gaggtcgccaacaccaaccttggcactttggatacctccatgctggtgaattttgtcatc
gggtacacaccgccaacccgaatggcacgagaaatcatgaagaaagtggctttcgataac
tttgaagatggcctcatcacggaggagtatttaagcgaggaggagctgcaagaggctagt
gcttttaaaccctcaaactttgtgggcgtcgtgttcaatgatgccatgtcctaccagctg
aggtttcccgatttggtcgctatggtcacttacatggaatcaagagccagttgctccaac
ctgcggaaagggtgtgaatcggtgacgtactggagctcaggatttacggctctgcaagcc
tgtatcgatgctgcaattatacagctgaaaactaatcactccgtttgggaacaactggag
ctgacgagagcagtggttatgggagaagctgcagtggtggaaatagataattttcctcgt
gcgatcattttaatttacctagtgatcgctttctcaccgtttgggtattacttggcgatt
catattgtggcggaaaaggagaggaagttgaaggaattcttaaagatattgggactgcat
gacactgccttttggctttcttgggtgctgctctacatgagcctgatttttgtcatgtcc
attcttatggcagtgatcgcgacggcctcttccctctttccccagagcagtgcctttgtg
atatttctcctttttttcctgtatggaatctcttcagttttctttgcacttatgctgaca
cctttatttaaaaagtcaaagcacgtaggtatagtggagttcttggcaacgctgactttt
ggttttgtgggccttaatattgtcctgctggaagatttccccaagtcctttgtgtggatt
ctcagccccttatgtcagtgcagcttcttgatcggtgtcgcgcaggtcatgcatctagaa
gattataaagatggtgcaacattcgcaaatctaaatgatggtccttacccactttttatc
tctcttattttattgatgctggatagcatattttatctgcttgtagctgtgtaccttgat
caggttatcccaggagagtttggactacgccgcgtgccatttttctttatgaagccctcg
ttttggtcaaagcgcagaaaaaattacaaagagctgtacgagagtagtgtcaacggcagc
ttgagtttcagtgagatagttgaacctgtgccttcggaatttcaggggaaagaagccatc
agaatcagctgtgttcagaaaacattcaggaaaaaaggggaaactgtggaggctctcaga
aatttatcctttgacatctatgaaggtcagatcacagctctgcttgggcacagcgggact
gggaagacgacgctgatgaacatcctttgcgggctgtgcccaccaacggatgggttcgtc
tctgtctacgggcacaaagtctctgaaatcgatgagatgctcgaagtgcgacaaatagca
ggtgtgtgtccccagtctgatatacacttcgatatattaactgtggaagagaacctctcc
atatttgctgcaattaaaggaatcccacagaatgatttgatacaagaggtgcagaaggtg
ttgttggatttggatatacagcctatcagagataatcaagctaaaaaattaagtgggggc
cagaaaaggcggctgtcagtgggaattgctgttcttgggaacccaaaggttttactgctg
gatgagccgactgcgggtatggatccgtgttcacggcacattgtctggaacctcttgaaa
aacaggaaggcgaatcgcgtgactgttttcagcacccacttcatggatgaggcagatatc
ctcgctgatcgtaaagctgtgatttctcaagggatgttgaaatgccttggatcttctctc
tttctcaaaagcaaatggggaattggctaccgcttgagtatgcacatcgatgcctattgc
aacacggaagctacgacctcgctgataagacagcacattcctgcagccagcctgatccag
gagaacgatgagcagctcgtgtacaccctgccactcaaggacatggacaaatttgcaggc
ttattttctgaccttgacactcattcccatttgggcgttatcacctatggcgtttccatg
acaacgctggaggatgtctatctgaagctggaagtggaggcagagatcgatcaagcagat
tatagcgtgttcaattcccaacaagtgcaggatgaaatggatacaaaatccctggacgat
atggagcagagcctcctgatgctgtcggagacgaaggcaccagcaatgagcaatacagcc
ctctggaagaagcaggtttccaccgtagcgaaagttcatttccttagtctcaagcgggaa
aataaatgtgtgagagttatgttgttgctttttctgatttttcttgtagttcagatttta
ttctttttcgtacaccacatcatcaaaaattctgtagctgctatcaaactttccccagat
ttgtactttctgaagcccggagaggtctatcacaagtacaggagtcgtctcctgctgcag
aactccacaggctcggatatcagtgacattgtccgctctcttgggagcatgaacatactc
ttggagatgtttaatgacagtgattacgtctcagctgcacctcacagcgcagctttaaac
gtgattgaccttgaatccagtcagaactatgttttcacggtcatattcaatagtaccatg
gtgcattccctgccagttttgatgaatattgttagcaatctccttctgcgcaatttaaat
gtgacggagagcattcagatctggagcaacccctttgttcagaatcttccagacacgatt
ttcaaactggagatctattttgaagctgtgttactgggcatcattattactggaatgccg
ccctattttgccatggacaatgcagaaaaccataagatcaaagcgtacacgcagttgaag
atagcgggactttatccctccgcttactggaccgggcaagctgttgttgacctcccgctg
tttttctccatccttgtcctgatgatcggcagcctctttgcctttcactacggtgtctac
ttctacgttggcaagttcattgctgtgattttttgcctgattggttatgtcccatcggtc
gtgctcttcacttacgtcgtctccttcacatttaaaaaagtccagaacacgaaagaattt
tggtcatttatattttcagtgacagctttgctctgtacagttgtcactgaagtggccttc
tttctggactattacttggtaaccaccgtcctgcattatgtcttctccatcttcattcct
atttatcctcttattggctgtcttatttgctttataaaggtctcgtggaaaagcaagcga
aagagtggaggatactacgacccatgggaccggctcctggtagcagttatagctccctat
ttgcagtgtgtcgtgtggcttttcctactgcgatgttttgagctgaagaacggcgggagg
acagttagagaggatccatttttcagaaaatgttttacaaaagccagaacctggaagttc
ccagatgtgtctcatgatgagaacgaagatgaagatgtgaaggcagagaggcttcgagtc
caagaaatactgaaaagccccaagagcgaggagatgccagcaatcctggtcagcagcttg
cacaaagagtttgatgaaaggaaggaatttcttctggggagaaaaataaaaaaagtggca
acaaaacatgtctctctctgcgtcaaaaaaggagaaatactggggttgttgggacccaat
ggagctgggaaaagcacgttaattaatatgctcgttggagagattgagccaaccagtggg
caggttctgatgggagattattcttttgggctgaacagtgaagatgactctgtgaaattt
gtgggttactgtcctcaaacgaatccactttggccagatatcacgttgcaggaacacttt
gaaatttatggtgctatcaaaggaatgagtcagactgacgttaaggaagtcataaaacgc
agcatcgcaagtgccctggatttaaaagaccacctgcagaagacaacgaagaagctgggc
gtagggctgaaacgcaagctgtgctttgccctgagtatgctgggcaacccgcgagtcacg
ctcttggatgaaccgtcaaccgggatggatccaaaagccaagcagcacatgtggcgggca
attcgagcagcgtttaagaataaggagagagcagctatcctgacgactcactacatggaa
gaggcagatgctgtctgtgatcgtgtggccattctggtgtccgggcagctcagatgtata
ggtaccgtccaacacctgaagagtaaatttggcagaggatacttcttggaaatgaaatta
aaagaaacagcagatgtacagcaagtggagtttctacagagacagattttgcacatcttc
ccaaatgcaaatcgtcaggaaagctttgcttctattttggcatataaaattcctaaagaa
gatgtacagtcactttcacattctttttccaagctggaagaagtaaaacacgcctttaac
atcgaggagtacagcttctctcaagcaacattggaacaggtttttgtggagcttgctaaa
gagcaggaggaggaggacagcagcttcggcaccttcaacagcacgctgtggtgggagagg
acgcaggaggaccgagtcattttctga
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integrated database retrieval system
