Cuculus canorus (common cuckoo): 104057201
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Entry
104057201 CDS
T08597
Symbol
SMG8
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG8
KO
K18734
protein SMG8
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuca03019
]
104057201 (SMG8)
Messenger RNA biogenesis [BR:
cuca03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
104057201 (SMG8)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg8_Smg9
Motif
Other DBs
NCBI-GeneID:
104057201
NCBI-ProteinID:
XP_053940937
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All DBs
Position
20:complement(3128319..3133453)
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AA seq
963 aa
AA seq
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MPLSAAPPAALGPAAAVGPVSLRELLLNAAGGGDDEVCVVGIFGKTALQLCSEKEALVST
VCDRQVFPLFGQDDLEEEAEGAEGDPADKDYNELQAYYSRESRVLFLVLTSVCDTRQLLR
ACGDLAAAESRGSPPGQPSGHAPLPHAEAHEFWKHQEKLHCLNLLYLFSVCHILLLVHPT
CSFDITYDRVFRALDGLRQKVLPSLKAAIKDCPVGKEWKLNCRPCPPRLLFLFQLNGALK
VDPPPGRGQDPCSHLEKPPPKKHSPKRRLQHALEDQIYRIFRKSRVLTNQSINCLFTVPA
NQAFVYIVAGGAQDGDDPVAMLLDQLRSNCTMRETDSLLAPTLSGPRRYQMMRHGRQQLS
FHAESSSSSSSSSGQLVDCTLKEFLWQHVELVLSKKGFDDSVGRNPQPSHFELPTYQKWV
AAALKLYEVTIEGKDDDPTSLTGELSSKIMASIKVLEGYLDIDTKFSENRCQKALPMAHS
AYQSNLPHNYTMTVHKNQLAQALRVYSQHARGPAFHKYAMQLNEDCYKFWSNGHQLCEER
SLTDQHCVHKFHLLPKAGEKPEADRNPPVLYHNSRARSTGACNCGRKQAPRDDPFDIKAA
NYDFYQLLEEKCCGKLEHINFPVFQPSTPDPAPARDESSPAPPEGEIEKLKEKEPQTQGE
STGLSLALSLGQSTGSLGTYPPEAQGGGDNAESHGQGGDSKSEKRPSLVDRQASTVEYLP
GMLHSNCPKGLLPKFSSWSLVKLGPAKAYNFHTGLDQQGFIPGTNYLMPWDIVIRTRTED
EGDLDTNSWPAPNKAVPAKRSAVVMGRGRRRDDIARAFVGFEYEDARGRRFMCSGPDKVM
KVMGGGPKESAIKALNSDMPLYILSSTQGRGLKPHYAQFMRLFVVVPDAPLQITLMPQVQ
PGPPPCPVFYPEKQEITLPADGLWVLRFPYAYVTERGPCFPPKESQQLMSYKVLRGILKA
ITQ
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atgccgctgtcggcggcgccgcccgcagcgctgggcccggcggcggccgtgggtcccgtg
agcctgcgggagctgctgctgaacgcggcgggcggcggcgacgacgaggtatgcgtggtg
ggcatcttcggtaagacggcgttgcagctgtgctcggagaaggaggcgctcgtcagcacc
gtctgcgaccggcaggttttccccctcttcgggcaggatgacctcgaggaggaggcggag
ggagcggagggcgacccggcggacaaggactacaacgagctgcaggcgtactacagccgg
gagagccgcgtgctgttcctcgtgctcacctcggtctgcgacacgcggcagctcctgcgg
gcctgcggggacctggcggcggccgagagcaggggcagcccccccgggcagccctcgggg
cacgccccgctgccccacgccgaggcacacgagttctggaagcaccaggaaaagctgcac
tgcctcaacctgctctacctcttctccgtctgtcacatcctgctgctggtgcatcccacc
tgctccttcgacatcacctacgaccgcgtcttcagggcgctggatgggctgaggcagaag
gtcctgccctccctcaaggccgccatcaaggactgtccggttggcaaagagtggaaactc
aactgcaggccgtgccctccacgcctcctcttcctcttccagctcaatggggccctgaag
gtggatccccccccgggcaggggccaggacccctgcagtcacctggaaaagccaccccct
aagaagcattcccccaagagaaggttgcagcacgctctggaggatcagatctaccgcatc
ttccgcaagagcagggtgctaaccaaccagagcatcaactgcctgttcaccgtccctgct
aaccaggcctttgtctacatcgtggctggtggcgcccaggatggagatgatccagtggcc
atgcttctcgaccagctcaggagcaactgcaccatgagagagaccgactcgctgctggct
cccaccctgtcggggcccaggaggtatcagatgatgcgacacggcaggcagcagctctcc
ttccatgcagagagcagcagcagcagctccagctcctctgggcagcttgtggactgcacc
ctcaaggagttcttatggcagcacgtggagctggtgcttagcaagaagggctttgatgac
agcgtggggaggaacccgcagccctctcacttcgagctcccgacctaccagaagtgggtt
gccgcggctttgaaactgtacgaagtgaccattgaaggcaaagatgatgatccgacctct
ctcactggggaactgagctcaaaaatcatggccagcatcaaagtcttggaaggctattta
gatatagacaccaagttctctgaaaaccgttgccagaaagctctccccatggcccacagc
gcttatcaatctaacctgccgcacaattacaccatgacggtccacaagaaccagctggca
caggccttacgcgtgtacagccagcacgcccgcgggccagcctttcataagtacgccatg
cagcttaacgaggactgctacaagttctggagcaacgggcatcagctttgcgaagagcga
agtttaactgaccagcactgcgtgcataagtttcatctgctcccaaaagcaggggaaaaa
cctgaagcagacagaaatcctccagttctgtaccacaatagccgggctcgttccactggt
gcctgtaactgtggaaggaaacaagctcctcgggatgatccctttgatatcaaagcagct
aattatgacttctaccagctactggaagaaaaatgctgtgggaaactggagcacatcaac
tttcccgtattccaaccaagtacgcctgacccggcccctgctcgggatgagtcttcgcct
gcgcctccggaaggcgagattgagaaactcaaagagaaagaacctcagactcagggagaa
agcacaggcctgagcttagccctcagcctgggtcagtcgacgggcagcttgggcacttac
ccgcctgaggcccagggtggaggggacaatgccgaaagccatgggcagggcggagactcc
aaaagtgagaaaaggccaagcctggtagatcgccaggcatccactgtggagtacctccct
gggatgctccattctaattgccccaaaggcctcttgcccaaattctctagttggtcactg
gttaagctagggcctgctaaggcgtataacttccacacaggcttagatcaacaaggcttt
atcccaggaacaaactatttaatgccttgggacattgtcatcaggacgagaactgaagat
gaaggagatttagataccaattcctggcctgcgcctaacaaggctgttcccgcgaaaaga
agtgcggttgtgatgggaagaggcagacggagagatgacatagctcgagcttttgtagga
tttgaatatgaagatgcacgtggtaggaggttcatgtgttcagggcctgataaggtgatg
aaagtgatgggagggggcccaaaggaatcggccatcaaagccctcaactctgatatgcca
ctgtacatcctgtcgtcgacccagggacgaggactcaagccacactacgcccagttcatg
aggctctttgtggtggttcctgatgctccgctgcagatcacgttaatgcctcaggttcaa
ccagggccaccaccttgtcctgtattctaccctgagaagcaagaaataacccttccagct
gatggactgtgggtgcttaggtttccttacgcatacgtgacggaacgcggaccctgcttt
cctcccaaagaaagccaacaattaatgagttacaaagttctccggggaatactgaaagcg
attacacagtaa
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