Cuculus canorus (common cuckoo): 104057234
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Entry
104057234 CDS
T08597
Symbol
IGHMBP2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cuca03009
]
104057234 (IGHMBP2)
03012 Translation factors [BR:
cuca03012
]
104057234 (IGHMBP2)
Enzymes [BR:
cuca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104057234 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
104057234 (IGHMBP2)
Ribosome biogenesis [BR:
cuca03009
]
Eukaryotic type
Other ribosome biogenesis factors
104057234 (IGHMBP2)
Translation factors [BR:
cuca03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104057234 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
Viral_helicase1
Helicase_RecD
ResIII
SLFN-g3_helicase
AAA_16
nSTAND3
AAA_22
DEAD
Flavi_DEAD
UvrD-helicase
AAA_25
DnaB_C
IstB_IS21
AAA
T2SSE
DAP3
AAA_33
UvrD_C_2
PhoH
Motif
Other DBs
NCBI-GeneID:
104057234
NCBI-ProteinID:
XP_053922761
LinkDB
All DBs
Position
5:68719220..68751325
Genome browser
AA seq
981 aa
AA seq
DB search
MAAAAAERMLDLLREERDSEVEQSRVWQESVSLKELQSCGVCLLKLQAATQRTGLYGRLL
VTFQPGRHDSNAELPCNSFGPGDIVGLYEGTGQGEPLSTGVVTRITSKAVTVAFEESRDG
LLSLDQESSFRLLKLANDVTYNRLKKALNALKQYRGGPASDLIDVLFLSADPSAFTETKP
LKLYNNSLDASQRDAVAFSLAQRELAIVHGPPGTGKTTTLVEIILQAVQQGLKVLCCAPS
NIAVDNLVERLAGSKARILRLGHPARLLEPIQQHSLDAVLARGDNAQIVADIRKDIDQAF
ARTKKAQDKGERSHYLSEIKVLRKELREREESAMVAALTHASVVLSTNTGASLDGPLKLL
PENHFDLVVIDECAQALEASCWIPLLRAPKCVLAGDHKQLPPTIISHKAAAEGLSLSLME
RLIAEYGEKVVKMLTVQYRMHQAIMQWASSELYGGRLTAHPSVAQHLLKDLVGVTATEET
TIPLLLIDTDGCGLFELEVEDERSKGNPGEVQLAGLHIQALVDAGVKARDIAVVTPYNLQ
VDMLREHLCHRYPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRA
RRHVAVICDTRTVSNQAFLKRLVDYFGQHGEVRTAFEYLDNIAPENYAQEGRGERQWGLK
LPAASESKAQPPPGRKPKAVVPKATRPKTEAHLSPNTSESGRDSTGTKDGAKRFKAMLVA
FLESSEPQLDFPPSLNSHDRMLVHLMAEELGLQHVSTGEGRNRYLIVRRKEPAEPVLPPA
SPHSEQCSPPQPQNPGREAPVPAEPGGSNSSPEKVDLKSLHLERVQREKARQEAARKALG
PQGSGRKKDKSEAKGKPALKSTAGSMAEEDIDALISAAVKADNTCGFPRCKVSVTTLGQL
CLHCNRRYCLSHHIPEVHGCGEKAKAHARQRISREGVLYPGSGSKDKSLDPATRAHLQRR
LDKKLSELTSQRKSKKKDREK
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggcggcggagaggatgttggatctgttgcgggaagagcgggacagcgag
gtggagcagagcagggtgtggcaggagagcgtctccctgaaggaactgcagagctgcggc
gtctgcttgctgaagctccaagctgccacccagagaaccggcctctacgggcgcctgctt
gttacatttcagcctgggagacacgactccaatgcggagctgccctgtaacagctttggc
ccaggagacattgtaggcctttatgagggcaccggccagggcgagccgctctctactggc
gtcgtaacacgcatcacctccaaagcagtgactgtcgccttcgaggagtcccgtgatggc
ttgctgagcttggaccaagagagctcgttccgcctcctgaaattggccaatgatgtcacc
tacaacaggctaaaaaaagctttaaatgcactcaagcagtatcgcggcggcccggcctct
gatctgattgacgtcctcttcctttctgctgatccaagtgctttcaccgaaacaaagcct
ctgaagctttacaacaactcactggatgcatcacagagggacgccgtcgccttctcactg
gcacagagggagctcgccattgtccacgggccacctggcacagggaagaccacaacgttg
gtggagatcatcttgcaagctgtgcagcaaggcctgaaagtcctgtgttgcgccccttcc
aacattgcggtggataacctggtggaaagactggctggctccaaagcccgcatcctgcgc
ctcgggcaccctgctcgcctgctggagcccatccaacagcattccttggacgcagtcttg
gcccggggcgacaacgcacagattgttgcagatatcaggaaggacatcgaccaggccttt
gcaaggaccaaaaaagctcaagataagggagagcggagccattatctcagtgagattaag
gtgctgagaaaggaactaagggaacgagaagaaagtgccatggttgcagcccttacccat
gccagtgtcgtcctctctacgaatacaggggcttccttggacggcccgctgaagctgctc
cctgaaaatcactttgatctcgtggtgatagacgagtgcgcacaggctctggaagccagc
tgctggatcccgctcctgagggcgcccaagtgcgtcctggccggcgaccacaagcagctt
ccacccaccatcatctcgcacaaggcggctgccgagggcctttcgctcagcctgatggag
cgtctcatcgcagagtacggcgagaaggtggtgaagatgctgacggtgcagtaccgcatg
caccaggccatcatgcagtgggcttcctcggagctgtacggtggccggctcactgctcac
ccctcggtagcccagcacttgctcaaggacctggtgggtgtcaccgctacagaagaaacc
acaattcccttgttgcttatagacactgacggctgtggcctgttcgagctggaagtggaa
gatgaacggtcgaaggggaatccaggggaggtgcagctcgctggtttgcacatccaggcc
ttggtagacgctggtgtgaaggcacgtgacattgctgttgtcaccccttacaacctccag
gtggacatgctacgagagcacctctgccaccggtacccagagctggaaattaaatctgtt
gatggcttccaaggaagagagaaggaggcggtgatcctgtcgtttgtgaggtccaacagg
aaaggcgaggtgggcttccttgcagaagaccgtcggataaatgtagcggtgacccgtgcc
cggcgccatgtggctgtcatctgcgacacccgcaccgtcagcaaccaagccttcctgaaa
cgcctggtggattatttcggccagcacggggaggtgcgcacggccttcgagtaccttgac
aacatcgcccctgaaaactacgctcaggagggacgcggcgagcggcagtggggcctgaag
ctccctgcagcgtctgagtccaaagcacagccgcctcctgggaggaaacccaaagcggtg
gtgcccaaagctacgcgtccaaaaacagaagcacatttgtcccccaacacgagcgaatct
gggagagacagcacagggacaaaggacggtgccaagagattcaaggccatgctggtggcc
ttcctggagagcagcgagccgcagttggatttccccccatccctcaattcccatgatcgg
atgctggttcacctcatggcggaggagttggggctgcagcacgtgagcaccggtgaaggg
aggaaccgctacctcatcgttcgcaggaaggaacctgccgagcctgtgctccctccagct
tctccccacagcgagcagtgctcccctcctcagccgcagaatcccggcagggaagctcct
gttcctgccgagccaggaggaagcaacagcagcccagagaaagtggacctgaaatcgctg
cacctggagagagttcagagggagaaggccaggcaggaggcagcaaggaaggcgctgggc
cctcagggcagcggcaggaaaaaagacaaaagcgaagccaaaggaaagccagcgctgaag
agcacagcagggagcatggcagaggaagatatcgacgctctgatctctgctgctgtcaaa
gctgacaacacctgtggcttcccccgttgcaaagtcagcgtcacaaccctggggcagctc
tgcctgcactgcaaccggcgctactgcctcagccatcacatcccggaggttcatggctgc
ggggagaaggccaaggcccacgcacggcagaggattagcagggagggggttctctatcct
gggagcggctccaaagacaaatccctggacccagccacaagagcgcatctccaacggcgc
ctggacaagaagctcagcgagctgaccagccaaaggaagagcaaaaagaaagacagagag
aaatga
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