Cuculus canorus (common cuckoo): 104057518
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Entry
104057518 CDS
T08597
Symbol
VPS50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cuca04131
]
104057518 (VPS50)
Membrane trafficking [BR:
cuca04131
]
Protein recycling
Others
EARP complex
104057518 (VPS50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
104057518
NCBI-ProteinID:
XP_053914744
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All DBs
Position
2:complement(135602021..135681998)
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AA seq
986 aa
AA seq
DB search
MQKIKSLMTRQGLRSPQESVHDLSPIESFRIPTKEDLRELCEEPTDPQAQQEIINSIEEV
YFSSDSFDIVKYELERLPPVLSLQELEEYRDKLKQQQAAVSKKVADLILEKQPAYVQELE
RVTSLQAGLQLAAVICTNGRRHLNIAKEGFTQTSLGLLADQRKRQLLIGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKICKNFDVSHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNT
DTKFQKLQYKDLCTHITSDSYIPCLADLCKALWEVMLSYYRTMQWHENHDQDEAAAVSSV
SDGSNVIGTEENSFDRSYVKKKLEHGLSRIWQDVQLKVKTYLLGTDLSSFKYDDFIFVLD
VISRLMQVGEEFCGSKSEVLQESIRKQSVNYFKTYHRTRLEELRMFLENETWELCPVKSS
FSILQLHEFKFMEQSRSPSVSPSKQPASAISTTATLFEQYCNGGNPFEIQADSKDDETED
VLASNGYESDEQEKSAYQEYDSDSDVPEELKRDYVDEQTGDAPVKSISRETLRSRKRSDY
NLNKVNAPILTNTTLNVVRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAVYTFFGRN
DAPILSSSLSTSNREQHSARQFELTGLGLGSSRLRTTLSRIQESLIDLEVSADSTGTLNA
AEERKEKVPSPHLSHLVVLTSGNSLYGLAERVVATESLVFLAEQFEFLQPHLDAVMPAAK
KPFLQQFYSQTVSTASELRKPVYWIVAAKAIDYEQMLLLMTNVKWDVKEIMSQHNIYVDA
LLKEFEEFNRRLNEVSKRVRIPLPVSNILWEHCIRLANRTLVEGYANVKKCSNEGRALMQ
LDFQQFLMKLEKLTDIRPIPDKEFVETYIKAYYLTENDMDRWIKEHREYSTKQLTNLVNV
CLGSHINKKARQKLLAVIDDLDRPKR
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagatcaagtcgctgatgacccggcagggtctaagaagtcctcaagagagtgtt
catgacctcagtcctattgaaagctttcggatccctactaaggaggatctcagagaacta
tgtgaagaaccaactgatcctcaagctcagcaagaaataattaacagcattgaagaagtt
tatttttccagtgattcttttgatattgtgaagtatgaattagagaggcttcctccagta
cttagtcttcaagaactggaagagtacagagacaaattaaaacaacagcaagctgctgta
tctaagaaagttgcggatttgattctagaaaaacagcctgcatatgttcaggaacttgaa
cgtgttacatcgttgcaggctggccttcagttagcagctgttatttgcacaaatggaaga
agacacttgaatatagcaaaggaaggcttcacacaaaccagtttggggcttcttgcagat
caaagaaaacgacagttgcttattggattgctaaagtctctgagaacaataaaaacactg
caaagaactgatgtacgtttgagtgagatgttggaggaagaggactatccaggagctatt
cagctgtgcttggaatgccagaaagctgccagcactttcaaacactacagttgtataagc
gagttgaattcaaaactgcaagacaccttggaacaaatagaggaacaactggacgtagca
ctctccaaaatatgcaagaactttgacgttagtcattatacaaaggttcagcaggcttac
agactgcttggaaaaacgcagacagcaatggaccagttacatatgcacttcactcaagcc
attcacaacactgtgtttcaagtagtccttggatatgtggagctgtgtgcaggaaataca
gacaccaagtttcagaagttacagtacaaagacctctgtacacatattacatcagacagc
tacattccatgccttgctgatctctgcaaagctctctgggaagtcatgctcagttactac
cgaacaatgcagtggcatgaaaatcatgaccaagatgaggcagcagctgtgtcctctgtt
tcagatggtagcaatgtgattggaactgaagagaacagttttgaccgcagctatgtaaaa
aagaaattggagcatgggctttcacgaatatggcaggatgttcaactgaaagtgaaaaca
tatcttctgggaactgatctgtcgagcttcaaatacgacgacttcatatttgtacttgat
gttatcagcaggttgatgcaagttggagaagaattttgtggcagcaagtctgaagttttg
caagaatctatcagaaaacaaagtgttaactatttcaaaacataccacagaacccgtctt
gaagaattaagaatgtttttggagaatgagacttgggaactttgtcctgttaaatcaagc
tttagtattctgcagcttcatgaatttaagttcatggagcagtcacgttccccgtctgtg
tcacctagtaagcagcctgcttcagcaatttcaacaacagcaacattatttgagcagtac
tgtaacggaggaaacccttttgaaattcaggctgacagcaaagatgatgagacagaagac
gtgttagcttccaatgggtatgaatcagatgaacaagaaaaaagtgcatatcaagagtat
gatagtgacagcgatgttcctgaagagttgaaaagagattacgtagatgagcagacagga
gatgcccctgtgaaaagcatttctcgagaaactctgaggagcagaaagagatcagattat
aacctcaataaagtgaatgcacctatcctaacaaacactacattgaatgtagtaaggctt
gttgggaaatacatgcaaatgatgaatattctgaaaccaattgcatttgatgtgatccac
ttcatgtctcagctcttcgattactatttgtatgcagtctatacgtttttcggccgaaat
gatgcgcccatactgagttcctcactctctacttctaacagagaacagcacagtgctagg
cagtttgaattaacaggactaggcctcggtagcagcagattacgcactacactgagcaga
attcaggagagtctgattgatctggaggtctctgctgattccacaggaactctcaatgct
gctgaagagagaaaggagaaggtgccaagcccacatctcagtcatctcgtagttttgaca
tctggcaattcactgtatggtttggcagagagagtggtggccacggaatctttggtattt
ttggctgagcagtttgagtttcttcagcctcatcttgatgcggtgatgccagctgccaag
aagccttttcttcagcagttctattctcagacagtgtcaactgctagtgaattacgtaaa
ccagtttactggattgttgctgctaaagccattgattatgaacaaatgctgcttctcatg
actaatgtgaaatgggatgtgaaggaaatcatgtcacaacacaatatatatgtcgatgcc
cttttaaaggaatttgaagaatttaacagaaggttgaatgaggtgtctaagagagtccgt
attccactgcctgtgtccaacatcctttgggagcactgcatacgcttggctaatagaaca
cttgtggaaggttatgccaatgtaaagaagtgcagcaatgaagggcgtgccttgatgcaa
ctggactttcaacagttcttaatgaaactagaaaagttaacggacattaggcctattcca
gataaagaatttgtggaaacctatattaaagcttactacctaacagagaatgacatggac
cggtggataaaagaacatagggaatattccactaagcagctgacgaatctggtgaatgtt
tgtctgggctcccacatcaataaaaaggcaagacagaagctgctggctgttattgacgac
ttagacagacctaaaagataa
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