KEGG   Cuculus canorus (common cuckoo): 104057838
Entry
104057838         CDS       T08597                                 
Symbol
RFC4
Name
(RefSeq) replication factor C subunit 4 isoform X1
  KO
K10755  replication factor C subunit 2/4
Organism
cuca  Cuculus canorus (common cuckoo)
Pathway
cuca03030  DNA replication
cuca03410  Base excision repair
cuca03420  Nucleotide excision repair
cuca03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cuca00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    104057838 (RFC4)
   03410 Base excision repair
    104057838 (RFC4)
   03420 Nucleotide excision repair
    104057838 (RFC4)
   03430 Mismatch repair
    104057838 (RFC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cuca03032]
    104057838 (RFC4)
   03036 Chromosome and associated proteins [BR:cuca03036]
    104057838 (RFC4)
   03400 DNA repair and recombination proteins [BR:cuca03400]
    104057838 (RFC4)
DNA replication proteins [BR:cuca03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    104057838 (RFC4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    104057838 (RFC4)
Chromosome and associated proteins [BR:cuca03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    104057838 (RFC4)
DNA repair and recombination proteins [BR:cuca03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     104057838 (RFC4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    104057838 (RFC4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_assoc_2 Rad17 AAA_30 AAA_16 AAA_22 AAA_11 DUF815 SLFN-g3_helicase AAA_24 Mg_chelatase AAA_28 AAA_14 TIP49_C RuvB_N AAA_19 AAA_5 ResIII DNAX_ATPase_lid AAA_2 AAA_7
Other DBs
NCBI-GeneID: 104057838
NCBI-ProteinID: XP_009557565
LinkDB
Position
9:complement(16290682..16304163)
AA seq 362 aa
MQAFLKGPAAISTKGPAARERGAAGSSGEGKRLKPIPWVEKYRPKNVDEVAFQDEVVAVL
KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRQRVLELNASDERGIQVIREK
VKAFAQLTASGSRSDGKACPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY
ISRIIEPLTSRCSKFRFKPLTDKIQQQRLLDVAEKERVKISSEAVSYLVKVSEGDLRKAI
TFLQSATRLMGGKEITEKIVTEIAGVIPKETTDELQTVCRSGSFEKLEALAKNLINEGYA
VAQLVNQLHDDIVESEDYSDKQKSVIVEKLAEVDKCLADGADEYLQLMSLCALVMQQLTQ
NT
NT seq 1089 nt   +upstreamnt  +downstreamnt
atgcaggccttcctcaagggccccgctgccatcagcaccaagggccccgccgccagggag
aggggcgcggcggggagcagcggggagggcaagaggctcaaacccatcccctgggtggag
aaatatcgtcccaaaaatgtggatgaagtcgccttccaggatgaagttgttgctgtgctg
aaaaagtccttggaaggtgctgatcttcccaatctgttgttctatggcccacctggaact
ggaaagacttccactattttagcagctgctagagaactctttgggcctgaattattccgg
cagagagtccttgagttaaatgcttccgatgagcgtggaatacaagtgattcgggaaaaa
gtgaaggcttttgctcagctaactgcatctgggagccgttcagatggtaaagcttgtcct
ccttttaaaattgtaatcctggatgaggcagactcaatgacttcagcagcccaggcagcc
ttaaggcgcacaatggaaaaagaatccaaaacaacacgtttctgccttatctgcaactac
atcagcagaataattgaacctttaacatctcgatgctccaaattccgcttcaagcctttg
acagacaaaatccagcagcagaggctcttggacgttgctgagaaggaacgtgttaaaatc
agtagtgaggcagtatcttatcttgttaaagtgtcagaaggggacttaagaaaagcaatt
acttttcttcaaagtgccactcgtctaatgggcggtaaagaaatcacagagaagatagtc
actgaaattgctggggtcattcctaaagaaacaactgatgaactgcagactgtctgccga
agtggttcatttgagaaactggaagcattggcaaagaacctcataaatgaaggatatgct
gtcgctcagcttgtaaaccagctacacgatgatattgttgagagtgaagattacagtgac
aagcagaaatctgtcatcgttgagaaacttgcagaagtagacaaatgcctggcagatggt
gctgatgaatacctgcagttgatgagtctctgtgcccttgtgatgcagcagctaacgcag
aacacctaa

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