Cuculus canorus (common cuckoo): 104058061
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Entry
104058061 CDS
T08597
Name
(RefSeq) pre-mRNA-processing factor 39-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cuca03041
]
104058061
Spliceosome [BR:
cuca03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
104058061
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Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_19
TPR_16
TPR_12
TPR_11
TPR_2
TPR_10
HH_EMRA
Motif
Other DBs
NCBI-GeneID:
104058061
NCBI-ProteinID:
XP_053908544
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All DBs
Position
34:783099..798645
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AA seq
707 aa
AA seq
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MAAEEPDAPSNPNRAGVEEGAVGDEGEGGSGAPAEPPPPVPSATPEEPSAAASPPPPPAP
QSCNGAAAAPPPAPPEPEEPPPAAPEEPPPPRDPEPHPEEPPLTYPPDFERFWLAARSNP
HDFTAWTELLQYVEQENHLFAARKAFDAFFAHYPYCYGYWKKYADMERRFDCARETEEVF
ERGLQSIPLSMDLWIHYISYLQSTLDMNVPESIQKIRGVFEAAVAAAGMDFRSDKLWELY
VEWEREQGNLRGITGIYDRVLSMPTQLYSHHWEKFKEHVLHHPPKDILSPEELVWVQSKL
ATDPVPKPPEPEGTEAPPGEDLPPGVEGKGGAADAQEDLDQEKIRELVISMRQQIYAQNE
AEVSKRWNFEDGIKRPYFHVKPLERAQLRNWRDYLDFEMAAGSHERTIVLFERCVIACAL
YEEFWIKYTKYLENHTVTGARSVFQRACGYHLPRKPNIHLLWAAFEEKQGNLDEARRILR
CFEEAVPGLAMVRLRRVSLERRQGNLEEAEALLLEAMRANEGLPLASFYAVKLARQACKV
QKNLGKARKVLVEALEKDPDNARLHANLLEMEFGADIRQNEGNTMRCFERALRSPLPDEA
KLVFSQRRVEFLEDFGSSIHSLLTAYDEHQRILKQHAARKRAPENGSDEPDDKRLRPDEA
AALLGPLNFSSSGGDVASSPYSYWYQHGYGAYGYQSSWNYNQYYSQS
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggaggaaccggacgctccgagcaaccccaaccgcgctggggttgaggaaggg
gcagtaggggatgaaggggaaggagggagcggagcccccgccgagccgccccccccagtc
cccagcgccaccccggaggaacccagcgccgccgccagccccccacctcctcctgcccca
cagagctgtaacggcgccgccgccgccccccctccagctcccccggagcctgaggagccc
cccccggcagcgccagaggagcccccacctccccgggaccccgaaccccaccctgaggag
ccgcctctcacttatccccccgacttcgagaggttctggctcgcggcacgcagcaacccc
cacgatttcaccgcctggaccgaactcctgcaatacgtcgagcaagagaaccacctcttt
gccgcccgcaaagccttcgatgccttcttcgcccactacccctactgctatggctactgg
aagaaatacgccgatatggagaggcgattcgactgtgcgcgggagaccgaggaggtattc
gagcgaggcctccagtccatcccgctcagcatggatctctggatccactacatctcctat
ctccagtccaccctggatatgaacgttcccgaatccatccaaaaaatccgcggcgtcttc
gaggcagcggtggcggcagccggcatggatttccgctcggataagttgtgggagctctat
gtggaatgggaacgggaacagggaaacctacgtgggatcaccgggatctacgatcgcgtc
ctttccatgccgactcagctctacagtcatcactgggagaagttcaaggagcacgtcctg
catcaccctccgaaggatattttatccccggaagagctcgtctgggtccaatccaaactg
gccaccgatcccgttccgaagcctccggagccagaggggacggaagcaccgccgggagag
gatcttccacccggagtggaggggaaagggggagcggctgatgctcaggaggatttagac
caggagaaaatccgggagctggtgatttccatgcgccaacaaatctacgctcaaaacgag
gcggaagtcagcaaacgctggaattttgaggatgggatcaaacgtccctatttccacgtg
aagccgctggagagggcgcagctacggaattggcgggattatttggatttcgagatggca
gccggctcgcacgagcgaaccatcgtcctcttcgagcgctgcgtcatcgcctgcgccctc
tacgaggaattctggatcaagtacacaaaatacttggaaaatcacacggtgaccggagcc
cggagcgttttccagcgagcgtgcggctaccatcttcctcgcaaacccaacatccacctc
ctctgggcggcgtttgaggagaaacaagggaacctggatgaagcccgccgtatcctccgg
tgcttcgaggaagcggtgccgggtttggccatggtgcggttacgccgcgtgagcctggag
cggcgtcaggggaacctggaggaggcggaagcgttgctgttggaggcgatgagggcgaac
gaggggctgcctctcgcctctttctacgccgtcaaactggcgcggcaggcctgcaaggtg
cagaaaaacctcggcaaagctcgcaaggtgctggtggaagcgctggaaaaggatccggac
aacgcccggctccacgccaacctcctggagatggaatttggtgccgacatccggcaaaac
gaaggcaacaccatgcgctgcttcgagcgggcgctgcgcagccccctccccgacgaagcc
aaactcgtcttctcccaacgccgcgttgagttcctcgaggatttcggctccagcatccac
agcctgctgacggcctacgacgagcaccagcggatcctcaagcagcacgcggcgcgcaag
agggcgcccgaaaacggctccgacgaacccgacgacaaacgcctgcgcccggacgaagcg
gccgcgctcctgggccccctcaacttctcctcctccgggggggacgtggcctccagcccc
tacagctactggtaccagcacggctacggcgcctacggataccagagctcctggaactac
aaccagtattactcacagagctga
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