Cuculus canorus (common cuckoo): 104058071
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Entry
104058071 CDS
T08597
Symbol
SYVN1
Name
(RefSeq) E3 ubiquitin-protein ligase synoviolin
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca04120
Ubiquitin mediated proteolysis
cuca04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
104058071 (SYVN1)
04120 Ubiquitin mediated proteolysis
104058071 (SYVN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cuca04121
]
104058071 (SYVN1)
Enzymes [BR:
cuca01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104058071 (SYVN1)
Ubiquitin system [BR:
cuca04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104058071 (SYVN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_16
zf-RING_11
zf-RING_5
zf-ANAPC11
zf-RING-like
zf-HC5HC2H
zf-Nse
Endonuclease_7
Motif
Other DBs
NCBI-GeneID:
104058071
NCBI-ProteinID:
XP_053908413
LinkDB
All DBs
Position
34:771661..781818
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AA seq
551 aa
AA seq
DB search
MLCTAVVMAGSLALTTAVVAHAYYLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKF
MGKVFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLA
EDRVDFMERSPNISWLFHFRIVSLMFLLGILDFLFVNHAYHSILTRGASVQLVFGFEYAI
LMTMVLTIFIKYVLHSIDLQNENPWDSKAVYMLYTELFTGFIKVLLYMAFMTIMIKVHTF
PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEELQAMDNVCIICREEMVT
GAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPAQPPPEPPEQGPAPPQTPQVP
QPPNFPQGILPPFPPGMFPFWPPVGPFPPVPGVQPPNSAENATPTSGTASTTRPGDSPST
GSEAAASGTAPGLPLPPPWMGMPWPPVFGFPPMPVPPAGFAGLTEEELRAMEGHDRQNLE
ARLQCLQNIHTLLDAAMVQINQYLTVLATIGSPRPGASRPPTASTEDSTPLRSPESPSAS
GTDGSAATAGA
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgctctgcacggcggtggtgatggcggggagcctggcgctgacgacagccgtggtggcc
cacgcctattatctcaagcaccaattctaccccaccgttgtctatctcaccaaatccagc
cccagcatggccgttctctacatccaggctttcgtgttggtttttctcctgggaaaattt
atgggcaaagtgtttttcggacagctgcgggcggcggagatggagcacctactggagcgc
tcctggtatgccgtgaccgagacctgcttggccttcaccgtcttcagggatgacttcagc
ccgcgcttcgtcgcccttttcaccctcctcctcttcctcaagtgcttccactggttggcc
gaagaccgggtggactttatggaacggagccccaacatctcttggctcttccacttccgt
attgtctccctgatgttccttttgggaatcctggacttcctcttcgttaaccacgcctac
cacagcatcctgacgcgtggagcctcggtccagctcgtctttggcttcgagtacgccatc
ctcatgaccatggtgctcaccatcttcatcaagtacgttctccactccatcgacctgcag
aacgagaacccgtgggacagcaaagccgtctacatgctctacacggagctcttcacgggg
ttcatcaaagttctcctctacatggccttcatgaccatcatgatcaaagtccacaccttc
ccgctctttgccatccgccccatgtacctggcgatgaggcagttcaagaaagcagtgaca
gatgccatcatgtctcgccgagccatccggaacatgaacacgctctacccggacgccacg
ccggaagagctgcaggccatggacaacgtctgcatcatctgccgcgaggagatggtgacg
ggcgccaagcgtttgccttgcaaccacatcttccacaccagctgcctgcgatcctggttc
caacgccagcagacgtgtcccacttgccggatggatgttctccgggcttccctcccagca
cagccgcctccggagccaccggaacaaggcccagcgccaccccagaccccacaagttcct
caaccccccaactttccccaaggaatccttccccccttcccaccgggaatgtttcccttc
tggcccccggttggtcccttcccgccggttcctggcgttcaaccacccaacagtgccgaa
aacgctacgccgacctccggcactgcttcgaccaccaggcctggtgactcccccagcacc
ggctcggaagctgcggcatcggggacggcgccaggccttccgttgccgcccccgtggatg
ggaatgccgtggccacccgttttcggcttcccaccaatgccggtgccgccagccggcttt
gccggattgacggaagaagaacttcgagccatggaaggccacgatcggcaaaaccttgaa
gcgcggttgcagtgtctccagaacatccacacgctcctcgacgccgccatggtgcaaatc
aaccaatatctgacggtcttggccaccatcgggtcaccccgacccggcgcttcccggcca
ccaaccgcctccaccgaggattccaccccactccgctcccccgaaagcccttcagcatcc
ggaaccgacggctccgcggccaccgctggtgcgtga
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