Cuculus canorus (common cuckoo): 104058079
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Entry
104058079 CDS
T08597
Symbol
AFF1
Name
(RefSeq) AF4/FMR2 family member 1 isoform X1
KO
K15184
AF4/FMR2 family member 1
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cuca03021
]
104058079 (AFF1)
Transcription machinery [BR:
cuca03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Super elongation complex (SEC)
104058079 (AFF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AF-4
AFF4_CHD
AF4_int
Motif
Other DBs
NCBI-GeneID:
104058079
NCBI-ProteinID:
XP_053920752
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All DBs
Position
4:61690561..61801575
Genome browser
AA seq
1234 aa
AA seq
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MARLDYLLEDALKFLLMLMPPHFRPASNSCLYNEDRNLLRIRERERRNQEALQDKDKVPN
KTPLFAEPYKTNKEDELSSRIQNMLGNYEEVKELISNKSHQNLIGVPKCFTPLIPQGKPD
RPCFPEKTSHMLPSSFHHTTHHPLMGPMVVAPLPPSHSFHYQKTKSKLEPASGLHAKSHS
LSNNQSQGKEHSCSGQESLAGFHHKRNDRHEVGEGHTNELQPSILVLSPLLPSLSSPVAP
LSPLHSSQHNNSRSQNSGRSHGPTYSQTKSSQDLVTGSQEKESQDNSAVNLTSTTQPSSQ
TFPPPLPSKTSAVQQKPTAYVRPMDGQDQAPVESPVLKPLLEEYHGELYEKISDLKANAK
ARLSKLEIPSEPVEQTFPSDVHSIEEILKEMTHSWPPPLTAIHTPSTAETSKFPFPTKES
QHIGSVAQNHKQYDAPSKTLPSSQPRTSILQDDLQLSDSEESGDDQVVEKPPYSLPPPSV
PQSQPRIVASAHSSSPESGSISDSDSSSDSETESNSSGSEANDPPRASAPEPDPPTSNKW
QLDNWLTKVNPPAVPAEILSEIAHGDGHEKDKEHGQGISSYSFHQHAEPRESHHKSSGQV
ARTPQDTHLPTKRSCQKSVHAEEPFPRQTVGIKGPGKARVHEGPKGSLKVENDPGSFDIR
DQSSRDKPKAKTKGKPKSSDRRDPKLSMQEPSENRKQKSFHQANAKLCLDPQLMRDVLLG
SAQENLVLSPLPQDQGTTHTRTSGHRPAVVAKENFHKEKLTLHIMEKLSSSVRDSPFPQS
LTVKIDLPLLLRVPQPPGKDSHQKRAEAKELPNARKQDLERKSVNAPSKSLQKRKREMEK
EVNRKKMKSEKETKALQSSVNTDSNKKWKVSKASFEAQKKDLLVPPPLPPMSPAHPAPKS
TKVTQKRPRSEGGELPAMDNTARNKSIHKGPLFSKHKRVERSHAELSKGIKGSAEDVTNP
FPVPSLPNGTSKPRRPQLKIEKQHTMEYYIEEAKRLKHKADAMTDKTGKAFQYLDAALSF
IEYGVALESDALAQKPAYSIFSDTIDLIKFIMTLKPFTDLSAPPHEKIFAVLCMRCQSIL
HMVMFRYKKDTAMKYSRILNDHFKSSSRITQAPSPCVARSTSTPPLSPMPSPASSMSSQL
GLNASNCSGNSIASSVAVPYNIPSITSSYINITSYILYAYDIWEQADALARKNKEFFAEL
STVTCTLALNSSMTELVHYARQGLQWLRLETNSP
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atggcaaggctagactatctcttggaagatgcccttaaatttctgttgatgttgatgcct
cctcatttcagaccagcttcaaattcttgcttgtacaatgaggacagaaacttactgcgt
attcgagagagagagagacggaatcaagaggctctgcaggacaaagacaaggtccccaac
aagactcccctctttgcagaaccctataagactaataaagaagatgaactgtcaagccga
attcagaacatgctgggcaattatgaggaggtcaaggagctcatcagcaacaaatcccat
cagaatctcataggggttccaaaatgtttcactcctctgatcccacaaggaaagcctgat
cgcccatgcttccctgaaaagaccagccatatgttaccatcttcattccatcacacaact
caccatcctctcatgggacctatggttgtagctcctcttcctccaagccactcctttcac
taccaaaagacaaaatcaaaactagaaccagcttcaggtctgcatgccaagagtcacagc
ttatccaacaatcagagccaaggtaaagaacacagttgcagtggtcaggaaagtcttgca
ggttttcaccacaagagaaatgacaggcacgaggttggtgaaggtcataccaatgaactg
cagccctccattttggtgctttctccattgcttccatctttgtcttctcccgtggcaccc
ttgtcacctctacattccagccagcataacaattccaggtcacagaacagcggcagaagt
catgggccgacctatagtcaaacaaaatcatctcaggacctagtgacaggatcacaggag
aaggaaagtcaggacaactcagctgttaacctgaccagcaccactcagccttcctctcag
actttccccccacctttgccatcaaaaaccagtgcagtgcagcagaaaccaactgcctat
gtcagaccaatggatggccaagatcaggcaccagttgaatcaccagtgctcaaacctctc
ctggaggaataccatggagaactctatgaaaaaatttcagatttgaaggcgaatgcaaaa
gccagactatccaaattggagatcccttctgagcctgtagagcaaaccttccccagtgat
gtccactccattgaagaaattttgaaggaaatgacccactcatggccacctcccctgaca
gctattcatacgcctagtacagcagagacttccaaatttccattcccaactaaggaatca
caacatattggatctgtagcacagaatcataaacagtatgatgcaccttcaaaaacgttg
cctagttctcaaccaagaacatcaattctccaggatgacctgcagctcagtgatagtgaa
gagagtggtgacgaccaagttgttgaaaagccaccttattcacttcctcctccaagtgtc
ccgcagtcccagcccaggattgtggcttcagcacattccagcagcccagagtcagggagc
atcagtgactcagacagttcttcagactctgagacggaaagcaactcgagtggcagtgaa
gcaaatgaccctccaagagcgtcagcacctgagcccgacccaccaacttctaataagtgg
cagctagacaactggctaaccaaggtgaatccaccagcagtgccagcagagattctcagc
gaaattgcccatggggatggacatgagaaagacaaggagcacgggcagggcatcagcagc
tattccttccaccagcatgctgagccaagggagtctcatcacaagagctctggccaagtg
gccagaactcctcaggacactcatcttccaaccaaacgcagttgtcagaagtctgtgcat
gctgaggagccctttcccaggcagactgtgggtatcaaagggcctggtaaggcccgagtg
catgaagggcccaagggaagcctgaaggtggagaatgaccctggttcttttgacatcaga
gaccagtcttccagagacaagccaaaagccaaaacgaaaggaaagccaaaatccagtgac
agaagagacccgaaactgtcaatgcaagagccctctgagaaccgaaagcagaagagcttc
caccaggctaatgcgaaactctgcttggacccccagctcatgagagatgttttgcttggc
agtgcccaggagaatctcgttctcagtccccttcctcaagaccagggcacaacccacacc
aggactagtggtcacaggcctgctgttgtggccaaagagaatttccacaaggagaaactt
accttgcatatcatggagaagttgtcctcatcagtgagggactcccctttccctcagtcc
ctcactgtaaaaatagatctccctctcctattaagagtcccccagcctcctggcaaagac
agtcatcagaagagagcagaggccaaggaactccccaatgcaaggaagcaggacttagag
aggaaatctgtgaatgctccttccaagtcccttcaaaagaggaagagggaaatggagaag
gaggttaataggaagaaaatgaaatcagagaaagaaacaaaagcattgcagtcttcagtt
aacacagactccaataaaaaatggaaagtatcaaaagcttcgtttgaagcccagaagaaa
gatctcctagtacccccaccattgccacctatgtctccagcacatcctgcaccaaagtca
accaaggtgactcaaaagagacccagaagtgagggtggtgagctgcctgctatggataac
actgccaggaacaagagcatccacaagggtcctttgttctccaagcacaagagagtggag
agaagtcacgctgaactgtcgaagggcatcaaaggatctgcagaggatgtcacaaatcct
ttcccagtgccttctttgccaaatggtacctccaaaccaaggagacctcaactcaagatt
gaaaaacagcacacaatggaatactacatagaagaggccaagaggcttaagcacaaagcc
gatgcaatgactgacaagactggaaaggcctttcagtacctagatgctgccctttccttc
attgaatatggagttgccttggaatcagatgcactagcgcaaaaaccagcttacagcata
ttcagtgacaccatagatctcatcaaattcattatgacattgaaaccttttacagacttg
tcagcacctccacatgaaaaaatctttgctgtgttatgcatgcgttgtcagtccattctg
cacatggtgatgtttcgttacaaaaaagacactgcaatgaagtattccaggatcctgaat
gaccacttcaagagttcttccagaataacacaagcaccttctccatgtgttgcaagaagc
acaagcacacctcctctttctccaatgccctctcctgctagttctatgagttctcagctg
ggattgaatgctagcaactgcagtggaaacagcattgcttcttcagtcgctgtcccttat
aatatcccaagcatcacctcctcctacatcaacatcacttcctatatcctttatgcatat
gatatttgggaacaggctgatgcactggccaggaagaataaggagttttttgctgaactc
agcacagtgacatgcactctggcactgaacagcagcatgactgaactggtacactacgct
agacagggtttacagtggctgagactggaaacaaattcgccttaa
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