Cuculus canorus (common cuckoo): 104058094
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Entry
104058094 CDS
T08597
Symbol
LRBA
Name
(RefSeq) lipopolysaccharide-responsive and beige-like anchor protein isoform X1
KO
K24181
lipopolysaccharide-responsive and beige-like anchor protein
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cuca04131
]
104058094 (LRBA)
Membrane trafficking [BR:
cuca04131
]
Endosome - Lysosome transport
Others
Others
104058094 (LRBA)
Endosome - Golgi transport
104058094 (LRBA)
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
104058094 (LRBA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4704
Beach
DUF1088
NBCH_WD40
PH_BEACH
WD40
Laminin_G_3
Neurobeachin
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR75_1st
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WDR55
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
SUKH_6
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Motif
Other DBs
NCBI-GeneID:
104058094
NCBI-ProteinID:
XP_053920637
LinkDB
All DBs
Position
4:62855081..63265246
Genome browser
AA seq
2886 aa
AA seq
DB search
MASEGKQVVQPTGDDGGGVEEGSAAEAGSVLQPLNPGVPIRGIRMKFAVLTGLVEVGEVS
NRDVVDTVFDLLVGGHFDLEMNFIIQEAEGITCMVDLLDKCDITCQAEVWSMFTAILKKS
IRNLQACTEVGLVEQVLKRIDRADNMIADLLVDMLGVLASYNLTVRELKLFFSKLQGEKG
RWPPHAGKLLSVLKHMPQKYGPDAFFNFPGKSAAAIALPPIAKWPYQNGFTFHTWLRMDP
VNNINVDKDKPYLYCFRTNKGLGYSAHFVGGCLIVTSIKSKGKGFQHCVKFDFKPQKWYM
VTIVHIYNRWKNSELRCYVNGELASYGEITWFVNTSDTFDKCFLGSSETADANRVFCGQM
TSVYLFSEALNAAQIFAIYHLGLGYKGTFKFKAESDLFLAEHHKLLLYDGKLSSAIAFMY
NPRATDAQLCLESSPKDNPSIFVHSPHALMLQDVKAVLTHSIQSALHSIGGVQVLFPLFA
QLDYRQYSSDHVDTTICSTLLAFIMELLKNSIAMQEQMLSCKGFLVIGYSLEKSSKVHVT
RAVLELCLAFSKYLSNLHNGVPLLKQLCDHVLLNPAIWIHIPAQVQLILYTYLSTEFIGT
VNIYGAIRRVGTVLLVMHTLKYYYWVVNPQDRSGITPKGTDGPRPTQKEILSLRAFLLMF
VKQLVMKDYGIKEDELQAILNYLLTIHEDDNLMDVLQLLVALMSEHPGSMIPAFDQRNGL
QVVYKLLASQSEGIRVQALKVMGYFLKHLAPKRKAEVMLGHGLFSLLAERLMLQTSLITM
TTYNVLFEILTEQICTQVIHKQHPDPDSTVKIQNPQILKVIATLLRNSPQCPETLEVRRA
FLSDMIKLFNNSRENRRSLLQCSVWQEWMLSLCCFHPKTSEEQKITEMVYTIFRILLYHA
IKYEWGGWRVWVDTLSITHSKVTFEMHKESLSQMYREYQGRGGEGSGVSSSAPIRTISGV
GKEAETKGQQQSLELKEDITAPSCIIGDGMECSTEKKETNTSSDGNQQTCSVSNHGEELE
GEDGETAQDLKAVSCVEFSPEPEAIKPSISEISTGIAEAIEDSLSRADEHMGETVAVTAT
LAMQTTLEGETPESPERLEKLTVEVEEEDDFVDLKEESSMPLPSEEFEEMNKECSSNESK
VTKQEKAREKQLESLLVKSDDTEGVDGIKQELTSSPEAVSSAVQEVATQPDLEGKRKPEE
EKILFCETKTAKENANARLSEPAGTSDKRIAKLDVSSVASDTENLELKANTCLEAPLPPR
SIPETYLLVDALHSAPFFLKGGKPLSTATYTLGTSRQQDSSGQELAATSDGQKRDSRPTV
FRIPEFKWSLMHQRLLTDLLFSIETDIQMWRSHSTKTVMDFVNSSDNVIFVHNTIHLISQ
VMDNMIMACGGILPLLSAATSATHELENIEPTQGLSVEASLTFLQRLINLVDVLIFASSL
SFTEIESEKNMSSGGVLRQCLRLVCAVAVRNCLECQQHAQMKPIGDTGKNQKTVQGFIRT
GKSAAKSPVDMMTGGISPIRDHDRLLQDMDINRLRAVVFRDIEDSKQAQFLALAVVYFIS
VLMVSKYRDILEPQNERRPSNHSQSFKELENENNESPATDVKNPSAALGASASTEDSEST
ASVQGRDSSSLGEEPVSGQTNSSGSVAEAGPLNVSAGPDAISEVLCTLSLEVNKSQEGRS
ETGTDDSKPATSVPAAKNVNVKDILRSLVSTPADGAAVDAALLPPTFLGVLGNGAAEQPV
QFHSFDRSVVVPPKKSTISSSTAAVGIPTNAVSVVSSLDSAQALDLSGESPGRGSSNSRL
PSVPTVSSVPEDCASNMSITDRLEHALEKAAPLLREIFVDFAPFLSRTLLGSHGQELLIE
GTSLVCMKSSSSVVELVMLLCSQEWQNSIQKNAGLAFIELVNEGRLLSQTMKDHLVRVAN
EAEFILSRQRAEDINRHAEFESLCAQYSADKREEEKMCHHLIMAAKYRDQVTATQLIQKI
INILTDKHGAWGSSAPSRPREFWRLDYWEDDLRRRRRFVRNPFGSTHPEATLKAAGEHAP
DEDILVKGKQSIKSQVLGNQNSESEILLEGDDDIMSFIEEREVENLTGPVALSTPAQLVA
PSVVVKGTLSITPSELYFEVDEEDPSFKKIDPKILAYTEGLHGKWLFSEIRAIFSRRYLL
QNTALEIFMANRVAVMFNFPDQATVKKVVNCLPRVGIGTIFGLPQTRRISLASPRQIFKA
SNMTQRWQHREISNFEYLMFLNTIAGRTYNDLNQYPVFPWVITNYESEELDLTLPSNFRD
LSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFALTWLLRIEPFTTLFLNL
QGGKFDHADRTFSSVSRAWRNSQRDTSDIKELIPEFYYLPEIFVNSNNYNLGVMDDGTVV
SDVELPPWAKTPEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRSLNVFYYLT
YEGAVNLSSITDPILREAVEAQIRSFGQTPSQLLIEPHPPRSSAMQVYLLLQSPLMFTDQ
AQQDVIMVLKFPSNSPVTHVAANTQPGLATPAVITVTANRLFAVNKWHNLPAHQGAVQDQ
PYQLPVEIDPLIASNTGMHRRQITDLLDQSIQVHSQCFVITSDNRYILVCGFWDKSFRVY
STDSGKLIQVIFGHWDVVTCLARSESYIGGNCYILSGSRDATLLLWYWNGKTNIIGDNPR
GDFATPRAILTGHDYEITCATICAELGLVISGSKEGPCLIHSMNGDLLRTLEGPETLKGP
ENCLRPKLIQASREGHCVIYYESGFFCVFSVNGRLQATMETDDKIKAIQLSRDGQYLLTG
GDNGVVMVWQMWDLKQLFAYPGCDAGIRSMALSYDQRCIMTGMASGSIVVFYNDFNRWHH
EYQTRY
NT seq
8661 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtgaaggcaaacaagtagttcagccaacaggtgatgatggaggaggagtagaa
gaaggaagcgccgccgaagccgggagcgtgctgcagcctttgaatccaggagtccccatc
cgaggtatcaggatgaaattcgccgtactgacgggactggtggaggttggggaagtgtcc
aacagagacgtagtcgacactgtgtttgatctgcttgttgggggccactttgacttggaa
atgaactttatcatccaagaagcagagggcatcacctgcatggtagacttgctggacaag
tgtgatatcacctgccaggctgaggtgtggagcatgtttacggcaatcttgaagaaaagt
atacgcaatctacaagcatgcacagaagtggggctcgttgaacaagtgctcaagaggatt
gatagagctgacaacatgattgcagatctcttagtggatatgctgggtgtgttggctagc
tataacttgacagttcgagagctaaagttattcttcagcaagcttcaaggagaaaaagga
agatggccaccacatgctgggaagttattgtctgtgttaaaacacatgcctcagaaatat
ggacctgatgccttcttcaacttcccaggaaaaagtgctgcagctattgccttacctcct
atagccaagtggccataccagaatgggtttactttccacacttggctaagaatggatcct
gtaaataatatcaatgtggataaggataagccttacttatattgttttcgaacaaacaaa
ggacttggttattctgctcactttgttggaggctgcttgattgtaacgtccataaagtca
aagggaaaaggtttccagcattgtgtaaaatttgatttcaagccacaaaagtggtatatg
gttactatagtgcacatctataaccgctggaagaatagtgaacttcgatgttatgtaaat
ggggaactggcatcttatggagaaataacatggtttgtcaacaccagtgatacatttgac
aaatgtttcctgggttcttcagaaacagcagatgccaatcgagtgttttgtgggcaaatg
acgtctgtttacctttttagtgaggctctcaatgctgctcagatatttgccatttatcat
cttggtctgggatataagggaactttcaaattcaaggcagaaagtgacctcttccttgct
gaacatcacaaattattgctatatgatggcaaactatccagtgctattgcttttatgtac
aatccaagggctacagatgcacagctgtgtctagagtcatcccctaaggataacccttct
atttttgttcactcaccacatgccctcatgctgcaggatgtgaaagcagtcttaacgcat
tctatccaaagtgccctacactccattggaggagtgcaggtgcttttccctctctttgca
cagttagactataggcaatactcatcggaccatgttgacacaactatttgttctacttta
ttggctttcatcatggagttgttgaagaactccattgctatgcaagaacagatgctttcc
tgtaagggcttccttgtgatcggatatagcctagagaagtcttccaaagtccatgttacc
cgagctgtactagaactttgccttgccttttcaaaatacctgagcaacttacacaacgga
gtgcccttgctgaagcagctgtgtgatcatgttctccttaatcctgcaatatggattcat
atcccagcacaggttcagctgatcctgtacacctacctgtctactgagttcatcggcact
gttaacatatatggtgctatccgacgggttgggacagttcttttggtcatgcataccctc
aaatattattactgggtagtgaatcctcaagatcgcagtggtattactcccaagggcacg
gatgggccacggcctactcaaaaagagattttatctctgcgagcgttcttgttgatgttt
gttaaacagctagtgatgaaggactatggaataaaagaagatgaattgcaggccatcctc
aattatcttctcactatacatgaggatgacaatctaatggatgtcttgcagttgcttgtt
gctctgatgtcagagcatcctggctctatgatccctgcttttgatcagaggaatggatta
caggttgtctacaagcttttagcatcacaaagtgaaggcatcagggtgcaagctctgaaa
gtgatggggtatttcttaaagcatctcgctccaaagagaaaagctgaagtcatgcttgga
catggattgttctctttgttggctgaaaggctgatgcttcagacaagcttaatcaccatg
actacatacaatgtcctgtttgagattctgactgaacagatttgcactcaagtgatacat
aaacagcatcctgatccagattcaacagtgaagatacaaaatcctcaaattttgaaggtt
attgcaacactgctacgtaattctccacaatgtccagaaactctggaggttcgacgtgct
tttctctcagatatgattaaactttttaataacagcagagaaaatcggaggagtttgttg
cagtgctctgtctggcaggagtggatgctttccctttgctgttttcatccgaagacttct
gaagaacagaagataacggagatggtttataccatatttcgaattttgctctaccatgca
atcaaatatgagtggggtggctggcgtgtttgggtggatacactgtcaatcacacattcg
aaggtaacttttgaaatgcacaaagagagtctttctcaaatgtacagggagtaccaaggg
agaggaggtgaaggaagtggagtatcttcttcagctccaattagaacaatctctggagtt
ggcaaagaagctgaaaccaagggacagcaacaaagtttggagttaaaagaagatattacc
gctccttcctgcataattggtgatggtatggagtgcagtactgaaaaaaaagagacaaat
acctcatcagatggtaaccaacaaacttgttcagtgtctaatcatggggaggagttagag
ggggaagatggggagactgcacaggatttaaaagcagtgtcttgtgtggaattttctcca
gaaccagaagcaataaagcccagtatttcagaaattagtactggaatagctgaagcaatt
gaagattctttgagcagagctgatgagcatatgggggaaacagtagctgtcactgctact
ttagcaatgcaaactactttggaaggagaaactcctgaaagtccagaaagactggaaaaa
ttaacagtagaggtagaagaggaagatgactttgttgatttgaaagaggaaagtagtatg
cctttaccttcagaagagttcgaagaaatgaacaaggaatgtagctctaatgaaagcaaa
gtgacaaagcaggaaaaagcaagagagaagcaactggaatctctgcttgtaaaatctgat
gatactgaaggtgtggatgggataaaacaagaactgacttcatcaccagaagcagtgagt
tctgcagttcaagaagtagcaactcaaccagatttagaagggaaaaggaagccagaggaa
gaaaagattcttttttgtgaaaccaaaaccgctaaagaaaatgcaaatgctcgcctgtca
gagcctgctggaacatctgacaaaagaatcgccaagcttgatgtttctagtgttgcgtca
gatacagaaaatctggaactgaaagctaacacatgtctagaagcacctctgccgcccaga
tccatacccgagacatacctgctagtggatgctcttcattctgcaccattcttccttaaa
ggaggaaaaccactgtctacagcaacatatactcttgggacctcaaggcagcaagattct
tcaggacaagagctagctgctacatcagatgggcagaaaagagactctaggccaactgtg
ttccgtattcctgagtttaagtggtcactgatgcatcagcgcttgcttacagacttactc
ttttccatagaaacagatatacagatgtggagaagccattctacaaaaactgtgatggac
tttgtgaatagcagtgacaatgtcatatttgtgcacaacacaattcaccttatctctcaa
gtgatggacaacatgattatggcttgtggtggtatattgcccttgctttctgctgccaca
tctgctactcatgaattggagaatattgagccaactcaaggactttcagtagaagcatct
ttaacatttctccagagattaatcaaccttgtagatgtgctaatttttgcaagctctctc
agtttcactgaaatagagtctgagaaaaatatgtcatctggaggagttctgcgacagtgt
cttcgtctggtgtgtgcggtagcagtaagaaattgcttggagtgtcagcagcacgcacag
atgaagcctattggagacaccgggaagaaccaaaaaacagtgcagggctttataagaacg
ggaaagtctgcagcaaagagtccagtggacatgatgactggtggcatttctccaatacga
gaccatgacagacttctgcaggatatggatatcaatcgacttcgagcagtagtgttcaga
gatatagaggatagtaaacaggctcagttcttggctttggctgttgtatattttatttct
gtgctcatggtttcaaaatacagagatatactggaaccccagaatgaaaggcgaccctca
aaccatagccagtcattcaaggaattggagaatgaaaataacgaaagtcctgcaacagat
gtgaaaaacccatctgctgctcttggtgcttcagcctccacagaagattcagaaagtaca
gcatccgtacaaggaagagattcttctagtcttggggaggaaccagtgtcagggcaaaca
aacagttctggtagtgttgctgaagcaggacctctgaatgttagtgccggtccagatgca
atcagtgaagtactgtgtaccctctcattagaagtaaataagtctcaggagggcagaagc
gagacaggaactgacgatagtaaacctgcaacttctgtaccagctgcaaaaaatgtcaac
gtaaaggacatcttgagaagcttggtaagcacaccggctgatggggctgcagtggatgct
gctcttctgcctcccaccttccttggagtccttggcaatggagctgctgagcagcctgta
cagttccattcctttgacaggagtgtcgtcgtaccaccgaagaaatcaaccatttcttcc
tctacagctgctgtgggtattcctacaaatgctgtcagtgtggtttcttctttagattca
gcccaagctctggatttgtcaggagaatctcctggaaggggatcatctaattcaagattg
ccatctgtccctacagtttcttcagtgcctgaggattgtgcttcgaatatgagtattaca
gacaggcttgaacatgctttggaaaaagctgccccacttctgagagagatttttgtggat
tttgctccctttctttctcggactcttttgggcagccatgggcaggagttgctgatagaa
ggtacaagtcttgtgtgcatgaaatctagcagctcagttgtggagctggtgatgcttctt
tgctctcaggagtggcagaactctatacaaaagaatgctggcctagcctttattgagctg
gtcaatgaaggaaggttgctgagccaaaccatgaaggaccatctggtaagagtggctaat
gaagcagagtttatcttgagcagacaaagagcagaggatattaaccgccatgctgaattt
gagtcactgtgtgcccagtattcagcagacaaacgggaagaagaaaaaatgtgtcatcat
ctgataatggcagctaagtaccgagaccaggtgactgcaactcaactaatacagaaaatt
atcaatattctgacagacaagcatggagcctggggaagctctgcaccaagtcgtcctcgt
gagttctggcgccttgactactgggaagatgacttgcggcgccggcgacgatttgtgcgt
aacccctttggatcgacacatcctgaagcgacactaaaagcagctggagaacatgctcct
gatgaggatatacttgtgaaagggaagcagtccatcaagagtcaagttttaggaaatcag
aactcagaaagtgagattctcttggaaggcgatgatgatatcatgtcattcattgaggaa
agagaagtggagaacttaacaggtccagttgccctgagcacaccagctcagcttgtggca
ccctcagtagtagtgaaaggcaccctttccatcactccttctgagctctactttgaggtg
gatgaagaagatcccagttttaagaaaatcgacccgaagattctggcatatacagaagga
ctccatggaaaatggctcttttcagagattcgagctatcttttcccgacgttatcttttg
caaaatacagcgctggagatatttatggccaatagagtggctgtcatgttcaactttcct
gaccaagcaacagtaaagaaagtggtcaactgtctgcctcgagttggtattggtactatc
tttggactaccccagaccagacgcatttctttggctagtccacggcagattttcaaagct
tccaatatgacccagcgatggcaacatcgagaaatttccaactttgaatacttgatgttt
ctaaatactatagcaggtcgaacttacaatgatttaaatcagtaccctgtcttcccttgg
gttatcaccaactatgaatcagaagagttggaccttacacttcctagcaacttcagggat
ttgtcaaagcctattggagctttgaatccaaagagagctgcgttctttgctgagagatac
gaatcatgggaagatgatcaggttccaaaatttcactatggcacacattattcaacggca
agttttgcactcacgtggttattaagaattgaaccctttacaacactgttcctaaatcta
caaggtggaaagtttgatcatgcagatagaactttttcatctgtatcaagagcgtggcgc
aacagtcagcgtgatacttctgatatcaaggaattgattcctgaattctattatctccca
gagatatttgtcaatagcaacaattacaatctgggtgtgatggatgatggaacagttgtg
tctgatgttgaacttccaccatgggccaaaaccccagaagaatttgttcgcataaacaga
ctggcattagaaagtgagtttgtttcctgccagcttcaccagtggattgatctgattttt
ggctacaaacagcaaggaccagaagctgttaggtccctaaatgtattctactatttgact
tacgaaggagctgttaatttaagttcaattacagatcctatattaagagaggctgttgaa
gctcaaatacgaagttttggacagaccccttcccaactgctcatagaaccacatcctcca
agaagttctgccatgcaggtgtatctcctcctgcagagtccactgatgttcacagaccaa
gctcaacaggacgttatcatggtcctaaagttcccatccaactcccctgtcactcatgta
gcagccaacacccagcctggtctggctactcctgctgtgatcacagttactgcaaataga
ctatttgctgtaaataagtggcacaatcttcctgctcatcaaggtgctgtgcaagaccag
ccttaccagctgccagtggaaatcgatcctctcatagccagcaatacaggtatgcataga
aggcaaatcactgatcttttagaccaaagtattcaggtacattcccagtgttttgtcatc
acctctgataaccgttacatcttggtctgtggcttctgggacaagagtttccgtgtttat
tctactgactcaggtaaactaatacaagtgatatttggacactgggatgttgtaacctgt
cttgctcgttctgagtcctatattggaggaaattgttacattctctcaggatcacgtgat
gcaactttgctgctctggtactggaatggcaaaactaatatcattggtgataacccaaga
ggtgattttgcaactcctcgagctattttgacaggacatgactatgagatcacctgtgct
accatttgtgctgaacttggcctggtaataagtggttcaaaagaaggaccatgtctcata
cattctatgaatggagatctactgaggacattggaaggtcctgaaacattaaaaggtcct
gaaaactgcctgagaccaaaacttattcaagcttcaagagaaggccactgtgtcatatat
tatgaaagtggcttcttctgtgtattcagtgtgaatgggagacttcaagccactatggag
acagatgacaagataaaggcaattcagctgagtcgagatggacagtacctgcttacaggt
ggagacaatggagttgtaatggtatggcagatgtgggacctcaagcagctctttgcttac
ccagggtgtgatgctggaatccgatccatggccctatcgtatgaccaaaggtgtataatg
actggcatggcttccgggagcatagtggttttctacaatgatttcaatcgttggcaccac
gagtatcaaaccagatactga
DBGET
integrated database retrieval system
