Cuculus canorus (common cuckoo): 104058332
Help
Entry
104058332 CDS
T08597
Symbol
PMS1
Name
(RefSeq) PMS1 protein homolog 1 isoform X1
KO
K10864
DNA mismatch repair protein PMS1
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cuca03400
]
104058332 (PMS1)
DNA repair and recombination proteins [BR:
cuca03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
104058332 (PMS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HATPase_c_3
HMG_box_2
HATPase_c
HMG_WDHD1
HMG_box_5
CHDNT
Motif
Other DBs
NCBI-GeneID:
104058332
NCBI-ProteinID:
XP_053926498
LinkDB
All DBs
Position
6:complement(34255905..34314657)
Genome browser
AA seq
935 aa
AA seq
DB search
MKQLSAETIRLLSSSQVITSVVSVVKELIENSLDAGATNIDTKLENYGFNKIEIRDNGSG
IKVADVPFMAIKYYTSKISSSEDLERLTTYGFRGEALGSICCVSEVLITTKTADDEISTQ
YALDSNGHITSKKPSHLGQGTTVTVLKLFKNLPVRKQFYSTNRKCKEELKKVQDLLIAYG
IIKPDLRITLTHNKAVIWQKTRVSDHKMACMSVLGTAVMGSMVPFQHCCEDPEINLSGFL
PKAESDSSLTSLSSSERSFIFINNRPVHQKEILKVIRQYYSLMTHKDCTRLYPVFFLNIT
LPASAVDVNLTPDKTQVLLHYKESVLLAVENVLKSLYGPLPATVPGESSKTDVTSEDMFV
HRTEQTDVVVNEMGPSGSDDLQAHTSFLSFSSNVQNCQAGKNTEICLNHQTLCGENVHSH
LDKKEVSKSDAFPDSSLDLSCEEEWNGQNIVLLNIQSNTIPVDPEFKKANEHFLSSDNID
KIEKNEDTLVPKDLPEISADSWSVGRGFKNHLGDNLEPVKILIPEDEGTINMQNEHTDEQ
SSGPRISDQSRKKRNVITDKFGHVMAYDLISSRIIRKPKSAIGFFTQELRPKLITDNPKA
SMEDILLKIEEQWKNLNEEEKKNYEIKAAKDMERYNREVKKAMRQTVHRPAKEVEKQKPK
LRTSPCNQQKLEKIFHDQIEKKRKPEQPTKIVTVPFSLSSCRRQLQRHEKNYSGEHELFL
IRRHSFPDIWIFATENQVMLLNPYRLEETLLHKRLLMNHKLPVERLEKPIVLTDSLLGGS
LYMSALYKMQKDYQCFSGLGYLSDPRLVANGFQIKVIEGASATESHLEIEGIANCLPYYG
ISDLKEILTAVVHANANEVYACRPLKVINYLEGEAVRLARQLPLHLSKDDVQNTVYRMKQ
QLGEENKACVHGRPFFHHLTDIPEDDKHSSMEIIQ
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagctgtcagcagaaactattcgtctcctttcaagttctcaagtgattacatca
gttgtcagtgtggtgaaggagctgatagaaaactccttggatgctggtgccacgaatatt
gatactaaattggagaattatggatttaacaaaatagaaataagagacaatggcagtgga
atcaaggttgctgatgttccatttatggcgattaaatattacacatcaaaaataagctct
tctgaggacctggagaggctgacaacatatggtttccgcggagaggctttgggatcaatt
tgctgcgtatcagaggttttgatcacaacaaagacagctgatgatgaaatcagcactcag
tatgctttggatagcaatgggcatataacttctaaaaagccttcccatcttggacaaggt
actacggtaacagtactgaagttgtttaagaatcttcctgtaagaaagcagttttactca
acaaatagaaaatgtaaggaagaactgaaaaaagtccaagatctactgatagcatatggt
atcataaaaccagacctgaggataaccttaacacataataaggcagttatttggcagaag
accagggtgtcagatcacaaaatggcctgtatgtcagttctgggaacagccgttatgggc
agtatggtaccttttcaacactgctgtgaagaccctgagataaatctttctggatttctt
cctaaagctgagtcagacagttctttgacaagcctttcaagttcagaaaggagtttcatt
tttataaataatcgcccagttcatcaaaaggaaatactgaaggtaattcgacagtactac
agtctgatgacacacaaggactgtactcgtttatatcctgttttctttttgaatattact
ttacctgcctctgctgtggatgtgaatttaacacctgataaaactcaagttttactgcat
tataaggaatctgtcttacttgctgttgaaaatgtgttgaaatcactgtatgggccacta
cctgctacagtgcctggtgaaagtagtaaaacagatgttacctcagaagacatgtttgtt
catagaacagaacaaacagatgtggttgttaatgaaatgggaccatctggaagtgatgat
ctgcaggctcatacttcattcctttcattcagcagcaatgtgcaaaactgtcaagcagga
aaaaacacagagatctgcttaaatcatcagacactttgtggtgaaaatgtacatagtcac
ctggacaaaaaagaggtttccaagagtgatgcctttcctgacagttccttagatttatcg
tgtgaggaggaatggaatggacagaatatagtgttacttaatattcaaagtaacactatt
cctgtggaccctgagtttaaaaaagccaatgaacattttctgagttctgataatattgac
aaaatagaaaaaaacgaggacactttagtccctaaagacttacctgaaatctctgctgat
agttggagtgtgggaagaggatttaaaaaccatctaggagacaacctggagcctgttaag
attttgattcctgaagatgaaggaacaattaatatgcaaaatgaacatactgatgaacaa
agcagtggtccacgaatctcagatcaaagtagaaagaaaagaaatgtgataactgataaa
tttggacatgtaatggcttatgacttaattagtagtagaataataaggaaaccaaagtct
gcaattgggtttttcactcaagaattgcgtccaaaattgataactgataatccgaaggcc
agcatggaggacatcttgctgaaaattgaagaacagtggaagaatttgaatgaagaggaa
aaaaagaattatgaaataaaagcagcaaaagacatggaacggtacaacagagaagtcaag
aaagctatgagacagacagtgcaccgaccagcaaaggaggtggaaaaacaaaaacccaag
ctgaggacttccccatgcaaccagcagaagcttgagaagatatttcatgatcaaattgaa
aagaagcggaaacctgaacagcctacaaaaattgtcacagtgcctttttctctgagttcc
tgtagacgtcagcttcagagacatgagaaaaattattcaggtgaacatgagcttttcctg
attcgtcgccacagttttcctgatatctggatatttgctactgaaaaccaggtgatgtta
ctgaatccatatagattggaagaaaccctgctacataaaagattgctgatgaatcataag
cttccagtagagagactggagaagccaattgtgttaacagacagtcttcttggtggatct
ctgtatatgtctgctctttataaaatgcagaaggattaccagtgtttcagtggattaggt
tatttgtcagatccaaggcttgtggcaaatggattccagataaaagtgatagaaggtgct
tcagccacagaaagtcatctggaaatagaaggaatagctaattgtctgccgtattatggt
atttccgatttgaaggaaattctgactgcagtagttcatgcaaatgcaaatgaagtatat
gcatgtaggcctctcaaagtgataaattatttggagggagaagcagtacgtttagctcgg
cagctgcccttacatttgtcaaaagatgatgtacaaaacacggtttacaggatgaagcaa
cagcttggagaggaaaataaagcctgtgttcatggtcgacctttttttcatcacttaaca
gatattccagaagatgacaagcacagctccatggaaattattcagtaa
DBGET
integrated database retrieval system
