Cuculus canorus (common cuckoo): 104058393
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Entry
104058393 CDS
T08597
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cuca03021
]
104058393 (CHD1)
03036 Chromosome and associated proteins [BR:
cuca03036
]
104058393 (CHD1)
Transcription machinery [BR:
cuca03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
104058393 (CHD1)
Chromosome and associated proteins [BR:
cuca03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
104058393 (CHD1)
SLIK complex
104058393 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
DEAD
DUF7855_C
Motif
Other DBs
NCBI-GeneID:
104058393
NCBI-ProteinID:
XP_053909889
LinkDB
All DBs
Position
Z:complement(30792242..30842761)
Genome browser
AA seq
1813 aa
AA seq
DB search
MNGHSDEESIRNSSGESSRSDDDSRSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGT
QSESESDTPKEKKQIQAKPPKADGSEFWKSSTSVLAVQRSAMLRKEQQQRKTASSGSGSE
EDSSSSEDSGDDSSSETKKKKHKDEDWQMSGSGSVSGTGSDSESEEDREKSSCEESESDY
EPKNKVKSRKPASRIKPKNGKKSAGQKKRQLDSSEDEEEEEEEDDDDYDKRGSRRQATVN
VSYKEAEETKTDSDDLLEVCGEDVPQTEEDEFETIEKFMDSRIGRKGATGAATTIYAVEA
DGDPNAGFEKTKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVKGMKKLDNYKKKDQET
KRWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYS
ECSWEDGALIAKKFQARIDEYFSRNQSKTTPFKDCKVLKQRPRFVSLKKQPSYIGGHESL
ELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPL
STLTSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKD
KSFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHF
IMPEKFSSWEYFEEEHGKGREFGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMS
ALQKQYYKWILTRNYKALSKGLKGSTSGFLNIMMELKKCCNHCYLIKSPDDNEFYNKQEA
LQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIK
GELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAH
RIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTILHTGSTPSSSTP
FNKEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGPLTVGDELLSQF
KVANFSNMDEDDIELEPERNSRNWEEIIPEIQRRRIEEEERQKELEEIYMLPRMRNCAKQ
ISFNGSEGRRSRSRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYK
KFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDNSSGQERAGGRLGKVKG
PTFRISGVQVNAKLVISHEEELAPLHKSIPSDPEERKRYVIPCHTKAAHFDIDWGKEDDS
NLLIGIYEYGYGSWEMIKMDPDLSLTQKILPDDPDKKPQAKQLQTRADYLIKLLNKDLAR
KEAQRLAGAGSSKRRKTRTKKNKVIKAAKIKEEIKSDSSPQPSEKSDEDDDDEDSKDEIV
SVKHPHKKIKAEKENEEKPEPDIGIKKEAEEKRETKEKENKRDLKREKKEKEDKKELKEK
DIKEKRENKIKDSTQKEKEVKEEKVNEIKSENKEKNKKPPLLDTPVHITATSEPVPISEE
SEELDQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEY
TNPEQIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRHESQQHNDQNISSNMNTHVIR
NPDMERLRENTNHDDSSRDSYSSDRHFSQYHDYHKDRHQGDAYKKNDSRKRPYSAFSNGK
DHRDWDHYKQDSRYYSDSKHRKLDDYRSREHRSNLEGSLKESRAHSDHRSHSDHRIHPDQ
RSALEYGHHKSSRDYRYHSDWQLDHRASGSGPRSPLDQRSPYGSRSPLGHRSPFEHSSDH
RSTPEHTWSSRKT
NT seq
5442 nt
NT seq
+upstream
nt +downstream
nt
atgaatgggcatagtgatgaagaaagcataagaaatagtagtggagagtccagtcgatca
gatgacgattccaggtcagcatcaggttctggatctggttcaagctctggaagcagtagc
gatggaagcagcagccagtcaggcagcagtgactctgactcaggttcagagtcaggcact
caatcagaatcagagtctgacacacctaaagagaagaaacaaattcaagccaaaccacca
aaagctgatggatctgagttttggaagtctagtaccagtgtgcttgctgtgcaaaggtca
gccatgctaagaaaggaacagcaacaacgaaagacagcctcatcaggcagtggttcagaa
gaggactcgtcaagtagtgaagattctggagatgactcatccagtgaaaccaagaagaaa
aaacataaggatgaagactggcaaatgtcaggatcagggtcagtctcgggaactggttct
gattctgaatcagaggaagatagggagaaaagcagttgtgaagaaagtgaatctgactat
gagccaaaaaacaaggttaaaagccggaagcctgcaagcagaattaagccaaaaaatgga
aaaaagagtgcaggacagaaaaagagacaacttgattcatcagaggatgaggaggaggaa
gaggaggaggatgatgatgattacgataagagaggatctcgtcgccaggcaacggtcaat
gttagttacaaagaagctgaagaaactaagacagattctgatgatttgctggaagtttgt
ggagaagatgtcccacaaactgaagaagatgaatttgaaactatagagaaattcatggat
agcagaataggacgaaaaggagccacgggtgctgcaacaaccatctatgcagttgaggca
gatggtgacccaaatgctggatttgaaaagacaaaggagccaggagaaatacagtatctt
attaaatggaaaggttggtcacacatccataacacttgggaaaccgaggaaacactgaaa
caacaaaatgttaaaggaatgaagaaattggacaactataagaaaaaggatcaggaaaca
aaacgatggctgaaaaatgcttctccagaagatgtggaatattacaactgccagcaggag
cttacggatgatctacataaacaatatcagatagtggaaagaataattgctcattcaaat
cagaaatcagcagctggttatccggactactattgcaagtggcagggtttgccttattca
gagtgtagctgggaagatggtgctctcattgccaaaaagtttcaggcacgcattgatgag
tactttagcagaaatcaatccaagaccactccatttaaagactgtaaggttctaaaacag
aggccaaggtttgtttcactaaagaagcaaccatcttacattggaggacatgaaagctta
gagttaagagattatcagttaaatggattgaattggcttgctcactcatggtgcaaaggg
aatagctgtattcttgcagatgagatgggtctaggtaaaacaatacaaactatttctttt
ctgaactacctgtttcatgaacatcaattgtatgggcctttcttgctggttgtgccactt
tctaccttgacatcctggcaaagagagattcaaacttgggctcctcagatgaatgctgta
gtttacttgggagatataactagcagaaatatgattagaactcacgaatggatgcatccg
cagaccaaacgattaaaatttaacattcttctaacaacatatgaaattttgctgaaggat
aagtcattccttggtggtctgaattgggcgttcataggagttgacgaagctcatcgttta
aaaaatgacgactctcttctgtacaagactttaatagactttaaatctaaccatcgtctt
cttattactggaacccctctacaaaactccctcaaagaactttggtctttgttgcacttc
atcatgccagaaaagttttcctcctgggagtattttgaagaggagcatggcaaagggaga
gagtttggttatgccagtcttcacaaagaacttgagccatttctactgagaagggttaaa
aaagatgtagaaaagtctttacctgctaaagttgagcaaattctgaggatggaaatgagt
gcattgcagaagcaatattataagtggattttaaccaggaattacaaagccctcagtaaa
ggtttaaaaggcagtacctcaggctttttaaacatcatgatggaactcaagaagtgttgt
aaccattgctacctcattaaatcaccagatgataatgaattctacaataaacaggaggcc
ttacagcatttaatacgtagcagtgggaaactaatccttcttgacaagctactgatccgt
ctgcgagaacgtggcaacagagttctgattttctcacagatggtaaggatgctggacatc
ctagcagaatatctgaaatatcgtcagtttccctttcagaggcttgatggatcaataaaa
ggggaattgaggaaacaagcactggatcattttaatgcagaaggatcagaggacttctgt
tttttgctgtctaccagagctggaggactaggtatcaatttggcgtctgctgacactgta
gttatatttgattctgactggaatccacagaatgatctgcaagcacaggctagagcacat
aggattggacagaagaaacaggttaatatttatcggctggtcacaaaaggatcagtagaa
gaagatattcttgaaagagccaagaaaaagatggtgttagatcatttagtaattcagaga
atggacactacagggaaaaccatactacatacaggctctactccttccagctcaacacct
tttaataaggaggagttatcagcaattttgaagtttggtgctgaggaactttttaaagaa
cctgaaggggaagaacaagagccccaggaaatggatatagatgaaatcttgaagagggct
gaaactcgggaaaatgaaccaggtccattgactgtaggagatgagttgctttcacagttc
aaggtggccaacttttccaatatggatgaagatgatattgagttggaaccagaaagaaac
tcaagaaattgggaagaaatcattccagaaatccagcggcgaagaatagaagaggaggaa
agacaaaaagaacttgaagaaatatacatgctcccaaggatgagaaactgtgcaaaacag
ataagctttaatggaagtgaagggaggcgcagcaggagcagaagatactctggatctgat
agtgactccatctcagaaagaaaacggccaaaaaaacgtggcagaccacgaacgattcct
cgagaaaatattaaaggatttagtgatgcagagatcagacggtttatcaagagttacaag
aaatttggtggccctcttgaaaggttagatgctatagctagagatgctgagctagttgat
aaatcagagacagatcttagacgtttgggagagcttgtacataatggatgcattaaagct
ttaaaggacaattcatctggacaggagagagcagggggtagacttgggaaagttaaaggc
ccaacattccgaatctcaggagtgcaggtgaatgctaagctagtcatctctcacgaagag
gagttggcaccattgcacaaatccattccttcagatccagaagaaaggaaaagatatgtc
atcccatgccacaccaaggctgctcattttgatatagattggggtaaggaagatgattcc
aatctgttaataggcatctatgaatatggttatggcagctgggaaatgataaaaatggat
cctgatcttagtttgacacagaagattttgcctgatgatccagataagaaaccccaggcg
aagcagttacagacccgtgcagactacctcattaaattactgaataaagaccttgcaaga
aaggaagcacaaaggcttgctggggcaggcagttcaaagaggaggaaaacaagaactaag
aagaacaaggtgataaaggctgcaaaaataaaagaagaaataaagagtgattcttcacca
caaccctcggaaaagtctgatgaggatgatgatgatgaggatagcaaggatgagattgtt
tcagtgaaacatccacataaaaaaattaaagcagaaaaagaaaatgaagaaaagcctgag
ccagatattggtataaagaaggaagctgaagaaaaaagagagacaaaagaaaaggaaaat
aagagggatttgaaaagggagaaaaaagaaaaagaggataagaaagaattaaaagaaaaa
gatattaaagaaaagagagaaaacaaaataaaagattccacacagaaagaaaaagaagta
aaggaagagaaggtaaatgaaatcaaatctgaaaataaagaaaaaaataaaaaaccgcca
ttgttggatactccagttcatattactgcaactagcgaaccggttcctatatcagaagaa
tctgaagaactggatcagaaaacttttagtgtgtgcaaagaaagaatgaggcctgtcaaa
gcagcactgaaacagctggatcgaccagagaagggcctttctgaaagagagcaactggaa
catactagacaatgtctaatcaaaattggggatcacataactgaatgtctaaaggagtac
acaaatcctgaacaaattaaacagtggagaaaaaatttgtggatttttgtctctaagttt
acagaatttgatgcaagaaagctgcacaaattgtataaacatgcaatcaaaaaacgccac
gagtcccagcaacacaatgaccagaatattagcagcaatatgaatacacatgtaattaga
aatccagatatggaaagactgagggagaatacaaatcacgatgacagtagcagggacagt
tactcttctgatagacatttttcacaataccatgattaccataaagacaggcatcaggga
gatgcatacaagaaaaatgactccaggaaaaggccctattcagccttcagcaatggaaaa
gatcacagagattgggatcactacaagcaagacagcagatactacagtgacagtaaacat
agaaagttagatgactacaggagcagagagcacaggtcaaacctggaaggaagtttaaaa
gaaagccgggctcattcagaccaccgttcccattcagaccacagaatacatccagaccag
cgttctgctttggagtacggccatcacaaatcttctagagactataggtaccactcagac
tggcaactggaccacagagcttcgggtagtggcccaaggtcaccgttagatcagaggtct
ccttatgggtcaagatctcccttaggacacagatctccatttgaacactcatcagatcac
agaagtacacctgaacatacatggagtagcaggaaaacataa
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integrated database retrieval system
