Cuculus canorus (common cuckoo): 104058398
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Entry
104058398 CDS
T08597
Symbol
VPS13A
Name
(RefSeq) intermembrane lipid transfer protein VPS13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cuca04131
]
104058398 (VPS13A)
Membrane trafficking [BR:
cuca04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
104058398 (VPS13A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
104058398
NCBI-ProteinID:
XP_053911373
LinkDB
All DBs
Position
Z:28664947..28763256
Genome browser
AA seq
3208 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDSSQLKLGIWGGAVALKNLEIKENALSQLDVPFKVKAG
HIGQLNLQIPWQNLYTQPVEAVLDGVYLLIVPTASIKYDAEKEARQLLEARQRELQRIEE
AKQKIADQDKVKEEKQDTFVEKLVTQVIKNLQVKISNIHIRYEDDITNRNNPLSFGISLQ
NLSLQTSDKNWNPCLHDETAKLFYKLVRLDNLFAYWNVKSEMFYHGGCEESLVNLKQGIA
SQSVIPEGYDFVFRPISARAKLLMNPRSDVDFSSPKMDLDVNLQDITVEFNKPQYFSVME
LLESIDMMTRNLPYRKYRPDVPLHNNAKTWWKYVIYGILEVNVQPKLQMWSWEHIRHHRK
EVKNYKEMYKTKITSKKPSEEILKVLEEFEKALDIFNITLARQQAEVEATKAGLKIYRPG
VKQDDENSGGWFSWMWNWSSEKKNEQKQEVKGSSLEELMTPEEKAKLYAAIGYSETAVDP
TLPKSYEAMKFSVKLLSMSISIRENKQSPELVEFALTGLSTIFTQRPGAQAIRFETEITS
LEVTGMSREKCTPCLLSSRTVYSDESTSLLSIMFETNPLDEKADQRLRIESQPLEIVYDA
MTINSLVDFFRPPKDVHLEQLTSATLMKLEEFREKTSTGLLYVIETQKVLDLKINLMASY
IIVPQKGFYDRTSNLLLLDLGSLKMKSQSRSDLSELKVGQSTIEDIMSRAYDVFDIQLSS
IQLLYSKHDENWQEARKLKYSSQHILQPLDVKVEFSRAMVVTDARMPKFKLSGQLPLLSI
QISDQKLTSILELIDSIPKPESATATGSPPKITEAAISPVLSAPHLSQDVFPVLDLHSFA
ESESEEEFYDALSSPVEDMPFFEAPSGSLKRVNSTRRKRLHKQESLKNMTEFQLRFEVAE
VLIKLCRLTGNTETPVLQLEIVGLGTELKLRTFDMTANAFLREVCLLCPEYMDDNEKPVY
IITTLDNVEDDLLTLEYIKADINGPELKTVYQNVLQKIEVNFSSLDIHLHTETLLNAMNY
LNNLLPKQETKVAEETVHEKTEEKKDVLKKLTSKKSKYEDVIDLNICADLSCLRIFIREK
KHRIAEIHIQGLDSQVIMKKAATEVTAKLKNIIIVDSDETALYKKALYITGKEVFNFRMI
SYVNATDGMAYTNMDVVDNRIYLTVGCIQVVFVNKFVSSVLAFINNFQAAKEALTEATVQ
AAEKAATGVKELAERSSRLALDINIKAPVVIIPQSAMSANVLVADLGLITVKNQFFIAKT
KTRYNLPPVVDSMTVKLSELKLYRSCYEQGSLQTEVQLLQPLNLEVAVERNLAAAWYNEV
PDIEISGRLKPMNLILSQEDITTILRTLNENIGGSSASSTSLPEPKDMTSHSSGMHSTSQ
HSAGVTVVTSAVVELHSPVKIKTTLKLDFRFDSLTLVLYSPNSRQVTNLDQRDDLLKLAE
FKLVLLSAAVKMLSDSSMNASVKLANCTLDDKRQSIQKATPRMVEMKHGFEKKVMVDISY
KQGRDGTALDIVVQEIYICASMEFLLTVADIFLKANAESAAAQKNLKQSLPLKEQAPVQP
VTTTEMNIIVKNPEIVFVADLTRSDAPALVVTTQCEVFIKNSPEKYSMTAAVKEIQVKAC
PFLPEKRKGNITTVLQPCDFFFEMKQSGTNPQTADLMIKSLTIKVSPIIINTVITITSAF
YQTAETTEEETSQIPPDLWNKKDIKNLKMWFLEESNENKDTSPTTELVPTGESLKMNIES
VFLTLEAGVGHRTVPMLLAKSSFLGEVKNWSTLINLRSRLELEVHYFNEMFGVWEPLLEP
LEVEKTDLFKPWILEIKMKKKAKKALVESDAEEENYKVPEYKTVINVSSKDQLNITLSKC
GLQMLSNLGTAFAEAATQTSDIFKKDRAPFVIINSLGLPITIFPSDSFSVLNVELGAKIF
HLRDGENLNMEFVRTKSESDQFTAMTTLSSKRFYIQICPHNHSTVEKIPLTKVGRCIYRV
RHEESGVERSIVCQIDTVEGSKMITIRSPVQIRNHFSIPLNIFEEGRCLGTASPANEFNI
PLSSYRSILSLQPVANESGADREYDMCEGITFDEILKNVDSLLQRKCQSVRSTNHSLIIN
IVPVKDTLTSSLCAEDQWDFPYVVHLWPSVLLHNLLPYQITYSIEGSGNKYDSLQEGCSA
QIHNAVLDQTKLDLQLLNYLDQNWKSEYHIKSNLSDITFTTFYCITELDKTELDIAVHVT
YTTGQMVIAIHSPYWMVNKTGRMLQYKADGIHRKHPPDYKKPLLFSFQPKNFLQNNKVQL
MVTDSELSDPFSLDTVGSHGSVKCKSHKKEYQVGVTINNSSFNITRIVTFTPFFMISNRS
KYTLEVAEEGKEKWIPIVLQQWCEKQWERELSGMCIPFWPESDANKLLVRVENSELPPKK
INFDKQENCLLLHLDNKLGGITVDVNLTEHSTVITFSNYHDGAAPFLLINHTKEEIIEYG
QSSLSELEDCLQANKAVLYTWADPAGSRKLKWKCGNRTEEITPKEDKMEILSLDCRRVVY
LVSFFEGLQRIVLITEDENVFKLTYESVKAELAEQEIVLSLQDVGISLVNNYTKQEVSYI
GITSSDVVWETKPKKKSRWRPMSIKQTDKLEQEFKDYSELTPSENKIVELESNVLVCLTP
NGMNMKIQQPNEIPIRRNYLPALKVEYSSSAHQKSFRIQIYRIQIQNQIPGAIFPFVFYP
IKPPKSITLDSAPKPFTDVSIVMRTAGHSQISHIKYFKVLIQEMDLRLDLGFLYALAEFF
TQADVPSDQELELFKKDVESLQEELMSVSSMDTSQISLYEYFHISPIKLHLSFSLSTGGE
DSNKEERKNELIPLQSLNLLLKSIGATLTDVQDVVFKLAFFELSYHFCTTQQLQSAVRRH
YSKQAIKQMYVLILGLDVLGNPFGFIRGLSEGVEAFFYEPYQGAIQGPEEFIEGMALGLK
ALVGGAVGGLAGAASRITGAMAKGVAAITMDEDYQQKRREAMNKQPTGLREGITRGGKGL
VSGFVSGITGIVTKPIRGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKKV
ADSSEDVVSLRPPRFFGEDGVIRPYRLRDGAGSQMLQKIENGRFSKLRYIAHAMVNSTDM
LMVTKSGVLFVTKGTFGQLTCEWQYTFDEFTKEPFIVDGRRLRIEAKERVKSVFHAKEFG
KIINFKSPEDAKWILSKLEEVRENQPKL
NT seq
9627 nt
NT seq
+upstream
nt +downstream
nt
atggtgtttgagtcgctggttgtggatgtcctcaaccgtttcctcggcgactacgtagtg
aacctggacagctcgcagctgaagctgggcatctggggaggagctgtagcactgaagaat
cttgaaataaaagaaaatgcactgagtcagctagatgtgccatttaaagttaaagcagga
catattggtcaacttaacctacagattccatggcaaaacctttatactcaaccagttgag
gcagttcttgatggcgtttatttgcttattgtgcccacagccagcataaagtatgatgct
gaaaaagaagccagacagctcttggaagcaagacaaagggaattgcaaaggatagaagaa
gcaaagcagaaaatagctgaccaagataaagttaaagaagagaaacaagacacttttgta
gaaaaattagtcactcaggtcatcaaaaatcttcaggtgaaaatttccaacatccatatt
cgctatgaagatgatattacaaatcggaataaccccttgtcatttgggatttcacttcag
aatctaagtttgcagacctcagataagaattggaatccatgtttacatgatgaaactgcc
aagttgttctataagcttgtacgactggataacctttttgcttactggaatgtgaaatct
gagatgttctaccatggtggttgtgaggagtcattggttaacttaaaacagggaattgct
agtcagagtgtgattccagaaggttatgattttgtattccgccccatttcagctagagcc
aaactccttatgaatcctcgatctgatgttgacttttcatcaccgaaaatggatttagat
gtaaatttacaggatattactgttgaattcaataagccacagtacttcagtgttatggag
cttcttgagtctattgatatgatgactcgaaatctgccatataggaaatatagacctgat
gttccgttacacaacaatgcaaaaacatggtggaagtatgtcatttatggcatccttgag
gtaaatgttcaacctaagctccaaatgtggtcatgggaacatattcggcaccataggaaa
gaagtgaagaattacaaagagatgtataaaacaaagataacatcaaaaaaacctagtgaa
gagatcttaaaagtattggaggaattcgaaaaggccctggatatttttaatatcactcta
gcaaggcaacaagcagaagttgaggcaactaaagctggattaaagatctacagaccagga
gtaaaacaagatgatgaaaattctggtggctggtttagttggatgtggaactggtcaagt
gaaaagaagaatgaacaaaaacaagaagtaaagggttcaagtcttgaagagctgatgaca
cctgaagagaaggccaaactttatgcagcaattggatacagtgaaacagctgtggatcca
acccttccaaaatcatatgaagccatgaagttctctgtgaagttactaagcatgtctata
tcaataagagaaaacaagcaaagtcctgagctagtagaatttgcattaactggcttgagt
acaatatttacccaacgaccaggtgcacaagcaataagatttgaaacagaaattacctca
cttgaagttacaggcatgtctcgagaaaagtgtacaccgtgtcttctatcttctcgaaca
gtctattcagatgagagtacttcactcttaagcataatgtttgagactaatcctttggat
gagaaagcagatcagagactcagaattgaatcacagccactggaaatagtatatgatgca
atgacaataaatagcttagtggacttcttcagacctccaaaagatgtacatttagagcag
ttgacatcagcaactctgatgaagcttgaagaattccgtgaaaagacatcaacaggtttg
ttgtatgttattgaaacccagaaagttcttgacctcaaaattaatctcatggcttcatac
atcatcgttccacaaaagggattctatgaccgcacgtcaaatttactacttctggatctt
ggtagtcttaagatgaaaagccaaagtcgttctgatttatcagaactcaaagtaggacaa
agcaccattgaagatataatgtcaagagcctatgacgtttttgatatccagctgagcagt
atacagttactctacagcaaacatgatgagaactggcaagaggctcggaagctgaaatat
tcatctcaacatatcttgcagcccttggatgtaaaagtggaatttagtagggctatggtt
gttacagatgcaagaatgcccaagttcaagttgtcgggacagctgcctctactttctatc
caaatatcagaccagaagctgacgagtatcttggagctgattgatagcattcctaagcca
gaaagtgctactgctactggttctcctccaaaaataactgaggctgcaatatcccctgta
ctctcagcaccacatttgtcacaagatgtgtttcctgttttggatcttcattcatttgct
gagtcagaatcggaagaagaattttatgatgctctaagtagtcctgtggaagacatgcca
ttttttgaagccccatctggttccctcaagcgagttaacagtacaaggcgaaaaagacta
cataaacaagaatctttgaaaaatatgacggaattccagctaaggtttgaagtagctgag
gtcttaattaaattatgccgtctcaccggtaatactgaaacacctgtgctgcagcttgaa
attgtagggttaggcactgagctgaaattaagaacatttgacatgactgcaaatgctttc
cttcgtgaagtttgtctgctgtgccctgagtatatggatgataatgaaaagccagtttac
ataattactactttggataacgtggaagatgatctactcactcttgagtatataaaggct
gatattaatggaccagaactgaaaaccgtctatcagaatgttttacagaaaatcgaggtc
aacttttcatctctagatattcatttgcataccgaaactctgctgaatgctatgaactac
ctgaataatcttctacccaaacaagaaactaaagttgcagaagaaacagtccatgaaaaa
acagaggagaagaaggatgttcttaagaaattaacatcaaaaaaatctaagtatgaagat
gttatcgacctcaatatctgtgcagatttatcctgtttacgtatctttattagagagaaa
aaacacagaatagctgaaattcacattcaaggtcttgatagccaagtgatcatgaagaaa
gcagcaacagaagtgactgcaaaactaaagaacatcattattgtggattctgatgagaca
gcattgtataaaaaggctctttacatcacaggaaaagaagtcttcaactttagaatgata
tcatatgtgaatgcaacagatggcatggcatatacaaatatggatgttgttgacaatcgt
atttacctaactgttgggtgtattcaagtggtttttgtcaacaagtttgtttcatctgtt
ttagcttttataaataactttcaagctgccaaggaagctcttacagaggcaactgttcaa
gcagcagagaaagcagctactggtgtaaaagaactagcagagcgtagttcccgtttggca
ttggatatcaatattaaagcacctgttgtgataattccacagtccgcaatgtctgcaaat
gtcctggtggctgatcttggtctaatcactgtgaaaaaccaattctttatcgctaaaacg
aaaacgcggtataatcttccacctgttgttgactccatgacagtaaaattgagtgaactg
aagttatacagatcatgctatgagcagggctcattgcaaactgaggtacagttgctgcaa
ccactcaatctggaagtagctgttgaacgaaatttagctgctgcatggtataacgaagtt
cctgatattgaaatatctggacgactcaagcctatgaatctaattctcagtcaggaagac
attaccacaatattgaggacactgaatgaaaatataggtggaagctctgcttcatccaca
tctttaccagaaccaaaagacatgactagccatagtagcggtatgcatagtacttcacag
cactctgcaggtgtaactgttgtgacatcagctgtggtggaattgcattcacctgtgaag
ataaaaacaacactaaaactggacttcagatttgactctctgaccttagtattgtatagt
ccaaattcaagacaggttacaaatttggatcagagagatgaccttttgaagcttgcggag
tttaagttagttttgttgtcagctgcagtcaaaatgttatcggatagttcaatgaatgct
tcagtcaaactggcaaactgtaccttagatgataaaagacagtcaatccagaaggctaca
ccaaggatggtggaaatgaaacatggatttgaaaagaaagttatggtggacataagctat
aagcaaggaagagatggcactgctcttgacatagttgttcaagagatatacatttgtgcg
agcatggagtttctacttactgttgcagatatattcctaaaggctaatgcagaaagtgct
gctgcacagaaaaatctcaaacagtcattacctttgaaggagcaagcacctgtacagcct
gtaactacaacagaaatgaacatcattgttaaaaatccagagatcgtgtttgtagctgat
ttaacaagaagtgatgctcctgcattggtggttacaacacagtgtgaggtcttcattaaa
aatagtcctgaaaagtatagcatgacagccgctgttaaagagatacaagtgaaagcatgc
ccatttcttccagaaaaaaggaaagggaacattactacggtgttacagccatgtgacttc
ttctttgaaatgaaacagtcaggtactaatccacagactgctgatctaatgattaaatct
ctaaccataaaagtttcaccaataatcataaacacagtaattactattacatcagccttt
tatcaaactgcagaaacaacagaagaagagacaagtcaaatacctccagacttatggaat
aagaaagatataaaaaatctgaaaatgtggtttcttgaagagtcaaatgaaaataaagat
acaagtccaaccactgaactggttcccacaggagagtcattgaaaatgaatatagaatct
gtttttctaacgcttgaagctggcgttgggcaccgaactgtaccaatgcttttagccaag
tcctcatttcttggagaagttaaaaattggagtactctaatcaacctacgctctcgtctt
gagctagaggtacactattttaatgagatgttcggggtatgggagcctttgcttgaacca
ctagaagttgaaaaaacagatttattcaaaccatggattcttgaaatcaagatgaaaaag
aaggctaagaaagcgttggttgaatcagatgcagaagaagaaaactacaaagttccagaa
tataaaacagtaataaatgtttcctcaaaagaccagctgaacattacgctatccaaatgt
gggctgcaaatgttgagtaatttgggcacggcatttgctgaagcagctactcaaacttca
gatatcttcaaaaaagaccgagcaccatttgtaataataaattctttaggacttcctatc
actatcttccctagtgattcctttagtgtcctgaatgttgaacttggagcaaaaatattt
catttaagagatggagagaatttaaacatggaatttgtcagaactaaaagtgagagtgat
cagttcacagcaatgacaactctgagtagcaagaggttttacattcagatctgtccacat
aatcattccactgtggagaagattccgttgacaaaagttggtcggtgtatttacagagtg
agacatgaggaatcaggtgttgaaaggtccattgtctgccaaatcgatactgttgaagga
agcaagatgataacgatacgctctcctgttcagataaggaatcatttttcaatcccatta
aatatttttgaggaaggaagatgtttagggactgcttcaccagcaaatgaattcaacata
ccactgtcctcctacagatccattctgagtttgcaaccagtagccaatgaaagtggagca
gatagagaatatgatatgtgtgaaggaattacatttgatgaaattctgaaaaatgttgac
agtttattacaaaggaaatgccagtctgtgagatcaactaaccactcacttatcatcaat
attgttcctgtaaaagacacattgacatcttcattgtgtgcagaagatcaatgggatttt
ccatatgttgttcatttatggccttctgttcttctccacaatcttcttccttatcagata
acttattcaatagagggaagtggaaacaaatatgacagtctacaagaaggatgttcagcc
cagattcataatgcagtgttggatcaaacaaaactagatttacagttgcttaattatctt
gatcaaaattggaagagtgagtatcatataaaaagcaatctatccgatatcaccttcacg
accttttactgcatcacggagttggataagactgaactggatattgctgtccacgtgacc
tacacaactgggcagatggttatagcaattcacagtccatactggatggtaaataaaact
ggtcgaatgctgcaatacaaagctgatggtattcaccggaagcatcctccagattacaaa
aagccgctccttttttctttccagcccaaaaactttctccaaaacaacaaggtgcagctt
atggtaactgacagtgaactgtctgatccgttttcactggacactgttggaagtcatggt
tctgtgaaatgcaagagccataaaaaggagtatcaagttggtgtaaccataaacaacagc
agttttaatattactagaattgtaactttcactccattttttatgatctcaaatagaagc
aaatacactttggaagtagctgaagaaggaaaggaaaagtggattcctattgttttgcaa
cagtggtgtgagaaacaatgggaaagggaacttagtggcatgtgcattcccttttggcct
gaaagtgatgccaacaaactgcttgttagagttgaaaattctgagctccccccaaagaaa
ataaattttgataagcaagaaaactgtctgctgctgcatttggacaacaagcttggagga
attactgtggatgttaacctgactgaacattctacagtgattaccttttctaattaccat
gatggtgccgctccttttctgttgataaaccatactaaagaagaaatcattgagtatgga
caaagttccctcagtgaattggaagactgtcttcaggcaaataaggcagtactgtatact
tgggcggacccagcaggatctagaaaattgaaatggaaatgtggaaatagaactgaggaa
attaccccaaaagaggacaaaatggaaatactcagcctggattgcagaagagtggtctat
ttagtgtcgttttttgaaggtttgcagcgcattgtcttaatcactgaagatgagaatgtg
tttaaattgacatatgaaagtgtgaaagcagagctagcagaacaggaaattgttctttca
ttgcaagatgttggaatttcattggttaataattatacaaagcaagaggtgtcctacatt
ggaattacaagttctgatgtggtttgggagacaaaacccaagaaaaaatcaagatggaga
ccaatgagtatcaagcagactgataaattagaacaagaattcaaagattacagtgaacta
actccttcagaaaacaagattgttgaattggaatcaaatgttttggtatgtttaactcct
aatggaatgaatatgaaaattcaacaaccaaatgagattccgatcagaaggaattatctg
ccagctttaaaagtggaatacagttcatctgcacatcagaagtctttcagaattcaaatt
tacaggatacagatacaaaaccagattcctggagccatatttccctttgtgttctatcct
attaaacctccaaagtccatcaccctggattcagcaccaaaaccatttactgatgtcagt
attgtcatgagaactgcaggacattcacaaatatctcatattaaatattttaaggtcctg
attcaagagatggatctcagattagatcttggctttctatatgcactggctgaattcttt
acacaggctgatgtgccaagtgaccaagagctagaacttttcaaaaaggatgttgaatct
cttcaagaagaactgatgagcgtgtcatcaatggatacatcacaaatcagcttgtatgaa
tactttcatatctctccgattaagttacacttgagcttttcactcagtacgggtggagaa
gacagtaacaaagaagaaagaaagaatgaattgataccactgcagtccttgaatctcctg
ctgaaaagtataggggccaccctcacagatgtacaagatgttgtctttaagttggcattc
tttgaactcagctatcacttctgtactacacaacaactccagtcagcagttcgaagacat
tattcaaaacaggctattaaacagatgtatgttcttattcttggccttgatgtattgggt
aatccatttggattcataagaggcttgtctgaaggagtagaagcattcttctatgaacct
taccagggagccatccagggtcctgaagaatttatagaaggaatggccctaggacttaaa
gcactagtcgggggagctgttggtggattggctggtgctgcatcaagaattactggtgct
atggcaaaaggagtagctgcaataactatggatgaggattaccagcagaaaaggagagaa
gccatgaataaacagcccactggtctgagagagggtatcactcgtggtggaaaaggatta
gtttctggttttgtcagtggcataacaggaatagttacaaaaccaataagaggagctcag
aaagaaggagcagctggttttttcaaaggtgttggaaaaggcttagtgggagcagtagct
aggcctactggaggaatcatagacatggccagcagcacctttcagggtattaaaaaagtt
gcagattcatcagaagatgtggtaagcttgcgcccacctcgcttctttggtgaagatgga
gttatcagaccttacagattaagagatggagctggaagtcaaatgttacagaaaattgaa
aatggaagattttcaaaactcagatatattgcacatgctatggtcaacagtacagatatg
ttaatggtgacaaaaagtggtgtgctatttgtgacaaaagggacatttggacagctgact
tgtgagtggcaatacacttttgatgaatttaccaaagaaccatttattgttgatggcaga
agattacgcattgaagcaaaggaacgagtgaagtctgtgtttcatgccaaagagtttgga
aaaattattaattttaaaagtccagaggatgcaaagtggatcctttctaaactggaagaa
gtgagggagaatcagccaaaattgtaa
DBGET
integrated database retrieval system
