Cuculus canorus (common cuckoo): 104058581
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Entry
104058581 CDS
T08597
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cuca03000
]
104058581 (RC3H1)
04121 Ubiquitin system [BR:
cuca04121
]
104058581 (RC3H1)
Transcription factors [BR:
cuca03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
104058581 (RC3H1)
Ubiquitin system [BR:
cuca04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104058581 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4
zf-C3HC4_3
zf-CCCH_UNK
zf-C3HC4_2
zf_CCCH_4
FYVE
zf-CCCH_4
PaaA_PaaC
Vesi_VP2
Baculo_IE-1
zf-RING_4
zf-RING_6
zf-RING_10
FimD_3rd
Motif
Other DBs
NCBI-GeneID:
104058581
NCBI-ProteinID:
XP_053928572
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All DBs
Position
8:1406410..1487187
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AA seq
1132 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINID
IELLPVNSALLQLVGAQVPEQQPITLCSGAEDTKHYEEGKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSGAILSEE
GGVDLPNRKTSALPNGIVPAGGTVTQLISRGTDSGYETALKPGKMDHLSSSAPGSPPDLL
ESVPKSSISALPVNPHPVPARAPADLPSVSVTKQLQMVPRGSQLYSTQQPDMFYQDPRGA
APPFEPAPYQPGVYYPTQSISRFVRPPPSAPEPGPPYLDHYPPYLQDRVVSPQYTQPQQY
PPMAQPIYPPHYDSRRVYPPVQPYQREEIVRGSPVPIEIPQAAVPSYVPESRDRYQQTEG
YCPVAPHLSQIRPSCHRPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTLPHLFHSE
EIFVFVQYLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAARSVEMANV
DSKAMRDQRLDMQRRAAETGDDDLIPFGDRPTVSRFGAISRTSKAMYQNSGPMQAMAVQG
ATTKSIISVADYNPYGTHSGWGGSPYSPHQNIPSQGRFSDRERLSMSDVTGHGKQLPSAE
REQQLRMELQQVDHQISQQTQMRGLEAVSNRLLLQREATTLAGQPQPPPPPPKWPGMISS
EQLSLELHQVEREIGKRTRELSMESQSSLDIKNKLGTTKQTENGQLEPQSKVPTENLALT
FSSDVPNGSALTQENIGLLSNKTASLSLSEDPETGGDNQDSQRTGVTPTSAP
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggattttctctcctgcccgatttgcacacagact
tttgatgaaacgatacggaagcccatcagcttagggtgcggccacactgtctgcaagatg
tgcctcaacaagctccaccgaaaggcatgcccttttgaccagaccactatcaatatagac
atcgaactcctgcctgtgaactcggccttgctgcagctagtgggtgctcaggttcctgag
cagcagccaattactttgtgtagtggagctgaagataccaagcactatgaagagggcaag
aagtgtgttgaagagttggcattgtacctcaagccactcagcagtgcgagaggtgtgggt
cttaacagtactacccagagtgtgctgagtcgtcccatgcaaaggaagctggtgacatta
gttcactgccagctagtggaggaagaagggcggatcagagctatgcgtgcagcgcggtcg
cttggtgaaagaacagtcacggagcttattcttcagcatcaaaatcctcagcagctctcc
tccaacctctgggctgcagtgagagccagagggtgccagttccttggaccagcaatgcaa
gaggaggctttaaagttggttctgctagctctggaagatggatctgctttgtcacgaaag
gtcttggttctctttgtggttcagaggctggagccgcgatttcctcaggcctcgaaaact
agcattggccatgttgtacagctgctttacagagcttcctgcttcaaggtaacaaagcga
gatgaggattcctccctgatgcaactgaaggaggaatttcggacttacgaagctctgagg
cgggagcatgattcccagatagttcaaattgctatggaagcaggtttacgcattgcacca
gaccagtggtcctcgctgttatacggagaccagtctcacaaatctcacatgcagtctatc
attgacaagttgcagaccccagcctcgtttgcacaaagtgttcaggaattaactattgct
cttcagaggactggagatccagctaacctgaatcgtcttcgtcctcatctagagctcctg
gcaaatatcgatcccagtccagatgctccacctccaacgtgggaacaactggaaaatgga
ctggttgctgtgaggacagtggttcatggcttagttgattatatccagaatcacagcaag
aaaggaacagatcagcaacagcctcctcagcacagcaagtacaagacatacatgtgccga
gacatgaaacagagaggaggatgcccccgaggggccagctgcacctttgcacattcacag
gaggagctagaaaaattccgtaaaatgaacaagcgtctggttcccagaagacccctgagt
gcctccctgggccagctaaatgaggtgggcctgccttcaggagctatcctctcggaggaa
gggggagtggacttgcccaataggaaaacttctgctctgccaaatggaattgtgccagca
ggcggcacagtgacgcaactaatttctcgagggactgactccggttacgaaactgctctg
aagccagggaagatggaccatctgagtagcagtgcccctggatcccctcctgacttgctg
gaatcagtccccaagagctccatttctgccttaccagtgaaccctcatcctgtgcccgct
cgagcaccggcagatctgccttcagtgtcagtcaccaagcagctgcaaatggtaccacga
ggatctcagctgtacagcactcagcaaccagatatgttttatcaagatcctagaggagct
gctccaccgtttgagccagcaccctaccagccaggagtttactatcccactcagtccata
tctcgctttgtccgacctcctccgtctgctcctgaacccggtccaccttatttagaccat
tacccgccctaccttcaggaccgcgtggtgagcccgcagtacacacagccgcagcaatat
cctcctatggcacagcccatctacccgccgcactacgacagccgccgcgtctatccccct
gtccagccatatcagcgagaggagattgtccgaggaagcccagttcccattgaaattccg
caagcggctgtaccttcctatgtacctgaatccagagacagataccagcaaacagagggt
tattgcccagtggctccacatctcagccagatcagaccttcttgccacaggccacatccc
agcctggacgaacttcaccggcgaaggaaagaaatcatggcccagctagaagagaggaag
gtgatttctccacctcctttcgcaccgtctccaaccttgcctcatctttttcattcagag
gagatttttgtgtttgtacagtacttggatgaagacctgaaggtagctgggaaatacaaa
ggaaatgactacagccagtactcgccctggtcctgtgacaccatcggctcctacattgga
accaaagatgcaaaacccaaagatgttgtggcagcaagaagtgtggagatggcgaacgta
gatagtaaagccatgcgtgaccagcgattagacatgcagcgaagagcagcagagaccggc
gatgatgacctcattccatttggagaccgaccaactgtgtcgagatttggggctatctct
cgtacctccaaagcgatgtaccagaactctggtcccatgcaggccatggcggttcaggga
gctaccaccaaatctatcatttcagtggcagactacaatccttacggaactcacagtggc
tggggaggctctccatattctcctcatcaaaatataccttctcagggacgtttcagtgac
agggagagactgtccatgtccgatgtgactggtcatgggaaacagttgccctcagcagag
cgagagcagcagctgcgcatggagctgcagcaagtagaccatcagattagccagcagaca
caaatgcgaggactagaggctgttagtaacaggctgctgttgcagagggaggcgactacc
ctggcaggccagccacagcccccaccccctcctcccaagtggcctgggatgatctcaagt
gagcagctgagcttggagctacaccaggtggaaagggaaattgggaagagaacccgtgag
ctgagcatggagagccagtcttcactggatataaaaaacaaactgggcaccactaaacag
accgaaaatggacagttagaaccacaaagcaaggttccaactgagaacctcgcactgaca
ttcagcagtgatgttccgaatggatcagccttgacacaagagaacatcggcctcctgtca
aacaaaacagcatctctcagcctgtcggaagacccagagacaggaggagacaaccaggac
tcccaacgcacaggagttacgcccacgtctgctccgtga
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integrated database retrieval system
