Cuculus canorus (common cuckoo): 104058622
Help
Entry
104058622 CDS
T08597
Symbol
CUX1
Name
(RefSeq) homeobox protein cut-like 1 isoform X1
KO
K09313
homeobox protein cut-like
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cuca03000
]
104058622 (CUX1)
Transcription factors [BR:
cuca03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain CUT
104058622 (CUX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CUT
Homeodomain
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
104058622
NCBI-ProteinID:
XP_053941385
LinkDB
All DBs
Position
20:6459760..6713307
Genome browser
AA seq
1536 aa
AA seq
DB search
MAANVGSMFQYWKRFDLQQLQRELDTTATILANRQDESEQSRKKLIEQSREFKKNTPEDL
RKQVAPLLKSFQGEIDALGKRSKEAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKVQRMH
DIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREYEQTLKNQAENIALEKEQKLQ
NDFAEKERKLQETQMSTASKLEEAEHKVQALQTALEKTRTELFDLKTKYDEETTAKADEI
EMIMTDLERANQRAEVAQREAETLREQLSSANKSLQLATQIQKAPDVEQAIEVLTRSSLE
VELAAKEREIAQLVEDVQRLQGSLTKLRENSSSQISQLEQQLTAKNSTLKQLEEKLKGQA
DYEEVKKELNILKSMEFAPSESSGAQDASKPLEVLLLEKNRSLQSENATLRITNSDLSGS
ARRKGKDQPESQRPATLPASPPSQLLRNAGEQASNTNGTHQFSPTGLSQDFFSSSLASPS
LPLASTGKFALNSLLQRQLMQSFYSKAMQEAGSTSMIFSTGPYSTNSISSQSPLQQSPDV
NGMAPSPSQSESAGSISEGEEIDTAEIARQVKEQLIKHNIGQRIFGHYVLGLSQGSVSEI
LARPKPWNKLTVRGKEPFHKMKQFLSDEQNILALRSIQGRQRENPGQNLNRLFQEVPKRR
NGSEGNITTRIRTTETGSDEAIKSILEQAKRELQVQKTAEPAQPPSASSSGNSDDAIRSI
LQQARREMEAQQAALEPALKTPPLSQADISILSPKLVSTPAMSSVSSYSPLAISLKKHSS
VTDSSISALQNLSGLKKEPQEAPGLELHGISDSAQGMLRHVKNELGRGGVWKDHWWNAVQ
HERRNTALPEDIKVEEASGGKEKVSNQTRPDRSQLQGPSSSEYWKEWPNAESPYSQSSEL
SMTGASRSETPQNSPLPSSPIVSLSKPSKPSVPPLTPEQYEIYMYQEVDTIELTRQVKEK
LAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQLWLNGELGQCVL
PAQGQQQGQVLHSVTSLQDSLQQGCASSESTPKTSASCSPAPESPMSSSESVKSLTELVQ
QPCPAIETSKDSKSQESSEPPASDSQSTTPLPLSGHSALSIQELVAMSPELDTYGITKRV
KEVLTDNNLGQRLFGETILGLTQGSVSDLLARPKPWHKLSLKGREPFVRMQLWLNDPNNV
EKLMDMKRMEKKAYMKRRHSSVSDSQSCESSSAGIDYSQGASPQPQHQLKKPRVVLAPEE
KEALKRAYQQKPYPSPKTIEELATQLNLKTSTVINWFHNYRSRIRRELFIEEIQAGSQSQ
AGSSDSPSARSSRAAHSSEGDSCDGVDAEGAPEGKPSGPEADEYSNATTKSQGGPSESAF
EAGEEALQGARSSEKAETFQAESLEDTDDEGRLRASRQSSPPASQRSGDALDPLPDSATE
GDASTSAASASVLTGESSKSKECSEKISSVPSTSSTPTAGSQKANSLQSLFGFSEAASSR
NTRDSSLRKKKAANLNNIIHRLEKAASREEAVEWEF
NT seq
4611 nt
NT seq
+upstream
nt +downstream
nt
atggcggccaatgtgggatcgatgtttcaatattggaagcgctttgatttacagcagctg
cagagagagctcgataccacagcaacgatattggccaaccggcaagatgaaagtgagcag
tccaggaaaaaacttatcgagcagagtcgcgagttcaagaaaaacactccagaggacctg
cgcaaacaggtagctccattactgaagagtttccagggagagatcgacgcattgggtaaa
agaagcaaagaagcagaggcagccttcttgaatgtctataagagattaattgatgttcca
gatccggtgccagccttggatttaggacagcagcttcagctgaaggttcaacgtatgcac
gatattgagacagagaaccagaaacttagggaaactctagaggaatacaataaagaattt
gccgaggtgaaaaatcaggaggttacaataaaagcacttaaagagaaaatccgagaatat
gaacagaccctgaagaaccaagcggagaacattgcccttgaaaaggagcagaagttgcaa
aatgatttcgctgagaaggagaggaaattgcaggagacacagatgtcgacagcctcgaag
ctggaagaagccgaacacaaagtgcaagctttgcaaacagccttggaaaaaaccagaaca
gaactatttgatctgaaaacaaaatacgatgaagaaactactgcaaaggctgatgagatc
gagatgatcatgacagacctcgaaagagcaaatcagagggcagaggtggctcagagagag
gcagagaccttaagggagcagctctcgtcagctaacaaatctctccagctggctacgcag
atccagaaggcacctgatgtggagcaggccatcgaggtgctaacgaggtccagcctggaa
gtggagctggctgcgaaggagcgggagatcgcccagctggtagaagatgtccagagactc
cagggcagcctcaccaagctgcgggagaactccagcagccagatctcgcagctggagcag
cagctgaccgccaagaacagcacgctgaaacaactggaagaaaaactgaaaggccaggct
gattatgaagaggttaagaaagaattaaatatattgaaatccatggagtttgcaccctcc
gaaagctctggtgcgcaggatgcatctaaaccgctggaggtgctgctgctggagaagaac
cgctccttgcagtctgagaacgccacgctgcgtatcacaaacagtgacctgagtgggtca
gccaggagaaaagggaaagaccagcctgagagtcagcgtcctgcaaccttgccggcctcc
cctccttctcagttgctccgcaacgcgggggagcaggcttccaatactaatggtacacac
cagttctcaccaacgggtttaagtcaagactttttcagctcatccctggcgagccccagc
ttacccctggcctccacaggaaaatttgcactaaactctctcctccagcgccagctaatg
cagtccttctactccaaggcaatgcaggaagcaggaagcacaagcatgattttctcaaca
ggtccttacagcacaaactccatatcttcccaaagtccattacaacaaagcccggatgta
aatggcatggccccatctcccagccagtcagaaagtgctgggagcatctccgaaggcgag
gagatagacacggccgaaattgcacgtcaggtgaaagagcagttgatcaagcacaatatt
ggacagcggatatttggacattatgtgttgggactgtcgcaagggtctgtgagcgagata
ctagcccggccaaagccatggaataaactgactgtgagaggcaaggagccatttcataag
atgaagcagttcctctcggacgaacagaacatcttggctcttcgcagcatccagggtaga
caaagagagaatccaggccagaacctgaacagactatttcaggaagtaccgaaacgaaga
aatgggtctgaaggtaacataaccacaagaatccgaaccacagagactggctctgacgaa
gccatcaaatccattctcgaacaagccaaaagggagctgcaagtacagaaaacagctgag
ccggctcagccgccttctgcatctagcagtggcaattctgacgatgctattcgatccatt
ctgcaacaagcccgacgggaaatggaggcacagcaggctgcccttgaacctgccttaaaa
acaccacctttatctcaagctgacatttctatcctgtcccccaaactagtatctacacct
gcaatgtcttcggtttccagctattctcctttggccatatccctgaagaaacattcatct
gtcactgattccagtatctctgcgttgcagaacctctctgggctcaaaaaggagccgcag
gaggcgcctgggttagagcttcatggaataagtgattctgcccagggtatgttgaggcat
gttaaaaatgagttgggacgtggtggtgtatggaaggaccattggtggaacgctgtgcag
catgagagaagaaatacagctcttcccgaagatataaaagttgaggaagccagtggtgga
aaagaaaaggtcagcaatcagactaggccagatcgtagccagctccaaggaccatcttct
tcagagtattggaaagagtggccaaacgcggaatctccatactcgcagagttctgaattg
agcatgactggggcgagtcgcagtgagacaccgcagaatagccccctcccttcgtcccct
atcgtgtctttgtcaaagccatccaaaccttcggttcctccactgacacccgagcagtat
gagatttatatgtaccaggaggtggatacgatagagctaacgcggcaggtcaaagaaaag
ctagcaaagaatggcatctgccaaaggatctttggggaaaaggtgttggggctgtcccaa
ggaagtgtcagtgacatgctctccaggccaaagccatggagcaaactgacccaaaaaggc
cgagaaccgtttattcgtatgcagctctggttgaatggtgagctgggacagtgtgtcctg
cccgcacaagggcagcaacaaggacaagtccttcactctgtgacatcattgcaggattcc
ctccagcagggatgtgcgagctcagaaagcactccaaagacttctgccagttgcagtcct
gctcctgaatcgcccatgagctccagcgagtcagtgaaaagcctgactgaattggtacag
caaccctgtcccgccatagagacaagtaaagacagcaaatcccaagaatctagcgagccg
cctgcttctgactcccagtcgacgacacctttgccgctgtcgggccactcggcactcagc
attcaagagctggttgcaatgtcccctgagctggacacatacggcatcacgaagagggtc
aaggaagtgctaacggacaacaatcttggtcagcgtttgtttggggagacaatcctcggg
ctaacacaaggctctgtctcagacctcctggctcgcccgaagccctggcacaagctgagt
ttgaagggacgggaaccctttgtccgcatgcagctgtggctgaacgatcccaacaacgtg
gagaagctgatggatatgaaacgaatggagaaaaaagcctacatgaaacggcgacacagc
tctgttagcgacagccagtcctgtgagtcctcctccgctggaatagactacagccaagga
gccagcccgcagccgcagcaccagctgaagaagccccgggtggtgctggcaccagaagag
aaagaagctctgaaacgagcctaccagcaaaagccatacccatcaccaaaaaccattgag
gaactcgctacgcagctcaacttgaaaaccagcaccgtgatcaactggttccacaattac
aggtctcgcatccgccgggagctgttcatcgaggagatccaagctgggagccagagccag
gctggatcgagcgactctccttccgccagaagcagcagagccgctcacagctccgaggga
gacagctgcgacggcgtggacgcagaaggcgcacctgaagggaagccgagtggcccggag
gcggatgagtacagcaatgcaaccacaaagtctcagggagggccatcggagtcggctttc
gaagccggggaggaggcactgcaaggcgccaggtcttcggagaaagcggagacgttccag
gcagagagcctggaggacaccgatgacgagggcaggctcagagcatcgcgccagagctcc
ccgccggcgtcacagcgctcgggagacgcgctggacccgctgccagactctgccacggaa
ggggatgcctctacctcagccgcctccgcctcggtccttacgggggagagctccaagtca
aaagagtgttcagagaaaatctccagtgtgccaagtacgagttcgacgcccaccgccggc
tcgcagaaagccaactctcttcagagcttgttcggcttctcggaggcagcgagctccagg
aacacgcgagacagctccttgaggaaaaagaaagcggcaaacttgaacaacatcatccac
cgcttggagaaagccgcgagtcgagaagaggccgtcgagtgggagttttga
DBGET
integrated database retrieval system
