Cuculus canorus (common cuckoo): 104058638
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Entry
104058638 CDS
T08597
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104058638 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cuca03041
]
104058638 (PRPF8)
Spliceosome [BR:
cuca03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104058638 (PRPF8)
Complex C
U5 SnRNP specific factors
104058638 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
104058638
NCBI-ProteinID:
XP_053941090
LinkDB
All DBs
Position
20:5499564..5520290
Genome browser
AA seq
2335 aa
AA seq
DB search
MAAVFPYRGACAPVPSPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYIAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLKDNRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDVNLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
VAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQGSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgtgttcccgtaccgcggggcctgcgcgccggtgcccagcccgctggcgccg
ctgccggactacatgtctgaggagaagctgcaggagaaggcccgcaagtggcagcagctg
caggccaagcgctatgcagagaaaaggaaatttggttttgtggacgcgcagaaggaggac
atgccccccgagcatgtccgcaagatcatccgtgaccacggtgacatgaccaacaggaag
ttccgtcacgacaagcgtgtctacctgggtgctctgaagtacatgcctcacgctgttctg
aagctcttggagaacatgcccatgccctgggagcagatcagagatgttccagtcttgtac
cacatcacgggtgccatctcctttgtgaatgagattccctgggtcatagagccggtgtac
atcgctcagtgggggtcaatgtggatcatgatgaggcgagagaagagagataggcgtcac
tttaagcggatgcgattccccccatttgatgatgaagaaccccctctggattatgctgat
aacatcctggatgtggagcccctggaagcgattcagcttgagctggatccagaggaggat
gccccggtgttggactggttctacgaccaccagccactgaaagacaacaggaagtatgta
aatggttcaacgtaccagcgctggcagttcactttgccaatgatgtccacgctgtaccgg
ctggccaatcaactgctcactgaccttgtggatgacaactatttctatttgtttgacctg
aaggcattctttacctccaaggcactgaacatggctattcctggaggtcccaagttcgaa
cctcttgttagagacgtcaatcttcaggatgaagactggaatgaatttaatgacatcaac
aagattatcatcaggcagccgatcaggacagagtacaaaatcgctttcccatacctgtac
aacaatctaccgcaccatgtccacctcacctggtatcatactccaaacgttgttttcatt
aaaacagaagatcctgatctcccagctttttactttgatccgctgatcaaccccatttca
cacagacattctgtcaagagtcaggaaccattgcctgatgatgatgaagagtttgaattg
ccggagtttgtggaacctttcctgaaggataccccactttacacagataacacagccaat
ggcattgccttgctgtgggccccacggcccttcaacttgaggtctgggaggactcggaga
gctcttgatatcccactggtcaagaactggtaccgtgagcactgccccgcaggccagcca
gttaaagtgcgagtctcctaccagaagctactgaaatactatgttctgaatgcgctcaag
cacagacccccgaaggcccagaagaagaggtacttgttccgctccttcaaggcaacgaag
tttttccagtcaacaaagctggactgggtggaagtgggcctgcaggtctgtcgtcagggc
tacaatatgctgaacttgctgatccacagaaagaacctgaactacctgcacttggattac
aacttcaacctgaagcccgtgaagaccctcaccactaaggaaaggaaaaaatctcgtttt
ggtaatgctttccatctgtgccgagaggttctgcgcctgactaagctggtggtggacagc
cacgtccagtacagacttggaaatgtggatgcatttcaattggctgatggcttgcagtac
atctttgcccacgtgggtcagctgacaggaatgtaccggtacaagtacaaactgatgagg
cagatccgtatgtgcaaggacctgaaacatctgatctactacaggttcaacacagggcct
gtgggcaaaggtcctggctgtggcttctgggctccaggctggagagtctggttgttcttc
atgaggggcatcacaccgctgctggaacgctggctggggaatctgctggccaggcagttt
gaaggccgtcactcaaagggtgtagcaaagactgtcacgaagcagcgtgtagagtctcac
tttgacctggagctgagggcagctgttatgcatgacattctggacatgatgccagaagga
atcaagcagaacaaagccagaaccatcctgcagcatctgagcgaggcctggcggtgctgg
aaggccaatatcccctggaaggtgccagggctgccaactcctattgagaacatgatcctg
aggtacgtgaaggcgaaagctgactggtggacaaatacagctcactacaacagggagcgg
atccgtcggggtgccactgtggacaaaaccgtctgtaagaagaatctgggccggctgacc
agactctacttaaaagctgagcaggagcggcagcataattacttgaaggatgggccttac
atcactgcagaagaggctgttgctgtgtacacaaccacagtgcactggctggaaagcagg
aggttctcacccattcccttcccaccgctgtcctacaagcatgacaccaagttgctcata
ttggccctggagaggctgaaggaagcttacagtgtgaaatcccgcctgaatcaatcgcag
agagaagagttgggtttgattgaacaggcttatgataatcctcatgaagctctgtccaga
atcaaacgacaccttttaacgcagagagccttcaaggaggtgggtattgagttcatggat
ctctacagccacttagttcctgtttatgatgtggagcccttggagaaaatcacagatgcg
tatctggatcaatacttatggtatgaggctgataagcggcgtcttttccctccatggatc
aaacctgctgacaccgaacctcctccactgttggtttacaagtggtgccaaggcattaat
aatctgcaagatgtttgggaaacaagtgaaggtgaatgcaatgtgatgctggaatctcga
tttgagaagatgtatgagaagattgacctgacgttgctcaacaggctgttgcgtcttatt
gtcgatcacaacattgctgactacatgacagctaagaacaacgtggtgatcaactacaag
gacatgaatcacacaaactcctatgggattatccgtgggctgcagtttgcttccttcatt
gtccagtattatgggcttgtgatggacctgctggtgctgggtctgcaccgtgccagcgaa
atggctgggcctccgcagatgccaaatgacttcctcagcttccaagacattgccactgag
gtggcccatcccatccgcctcttctgcagatacattgaccgtattcacatcttcttcagg
tttacggcagatgaggcaagagacttgattcagcggtacctgacagaacatccagatccc
aacaatgagaacattgtaggctataacaacaagaagtgctggccccgagatgctcggatg
cgccttatgaaacatgatgtgaaccttggccgtgctgtattctgggatatcaagaaccgc
ttgcctcgatcggtcaccacagtgcagtgggagaacagtttcgtgtctgtttacagcaag
gataacccaaatttgctgtttaacatgtgcggttttgagtgccgcatcttgcccaagtgc
cgcaccagctacgaggagttcacccacaaggatggtgtctggaacctgcagaatgaggtc
accaaggagcgcacggctcagtgcttcctgcgtgtggatgatgagtccatgcagagattt
cacaacagagtgaggcagatcctcatggcatctggctctacgaccttcactaagattgtc
aataaatggaataccgctctgattggcttgatgacatatttccgggaagctgttgtaaat
actcaggagttgcttgatttgctggtgaagtgcgagaataaaatccagactcgaatcaaa
attggcctgaattccaaaatgcccagccgttttccaccggtggtgttttacactccaaaa
gagttgggtgggctgggcatgctgtccatgggccacgttctcatcccacagtctgatctg
agatggtccaagcagacagatgttggcatcactcacttccgctcgggaatgagtcatgag
gaggaccagctcatcccaaatttgtatcgttacatccagccatgggaaagcgagttcatt
gactctcagagagtgtgggcagagtatgccctgaagcgacaagaggctatagcccagaac
agacgtctgacgctagaggatctggaggactcgtgggacagaggcattcctcgtattaac
acccttttccagaaggacaggcataccctggcttacgataaaggatggagagtcaggact
gacttcaaacagtatcaggtcctgaaacagaacccgttctggtggacacatcagcgccat
gatgggaagctctggaacctgaacaactaccgcacagatatgatccaggcacttggtgga
gtggaagggatcctggagcacactctcttcaagggcacttacttccccacatgggagggt
ctcttctgggagaaggccagtggctttgaggagtctatgaagtggaagaagctgacaaat
gcccagagatcgggtttgaaccaaattccaaacagaagattcaccctgtggtggtctcct
accattaacagagccaatgtgtacgttgggtttcaggtgcagctggatttgacaggcatc
tttatgcatggcaagatccccacgctgaagatttctctcattcagattttccgagctcac
ttgtggcaaaagatccatgagagcattgtaatggatttgtgccaggtgtttgatcaagag
ctggatgctctggagattgagacagtgcagaaagagacaatccatcccaggaagtcatac
aagatgaattcctcatgtgcagatatcctcctctttgcttcctacaagtggaatgtgtca
cgtccgtcattgctcgcagattccaaagatgtgatggacagcaccaccactcagaagtac
tggatagatatccagctgcgctggggagattacgattcccatgatatagagcgctatgca
agagccaagttcttggactacacgactgacaacatgagtatctatccatctcctaccggt
gtgctcattgccattgacctggcctataacttgcacagtgcttatgggaactggttccct
gggagcaaacctctgatccagcaggctatggccaaaattatgaaagctaatcctgcgttg
tatgtgttgagagaacgaatccgcaagggcttgcagctgtactcgtctgagcccacagaa
ccatacctttcttcccagaactatggagagctcttctccaaccagatcatctggtttgtg
gatgacaccaacgtatacagagtgaccattcacaagacttttgaggggaatttgactact
aaacccatcaatggagccattttcatcttcaatcccagaactggacagctcttcctgaag
atcatccatacgtctgtgtgggcaggacagaagcgtctaggacagctggccaagtggaag
accgctgaagaagtggctgccttgatccggtcgcttcccgtggaggagcagcctaagcag
atcatagtgactcggaagggcatgttggacccacttgaggtgcacttgctggatttcccc
aacattgtgatcaaaggctcagagttgcagctgcccttccaggcctgtctgaaggtggaa
aagtttggtgatctcatcctgaaggctactgaaccccagatggttctcttcaatctctat
gatgactggctgaaaaccatctcttcctacacggcattctctcgtctgattctcattctc
cgagcgctacatgtgaataacgatcgagccaaagttatcctgaaaccagataagacaacc
ataacggagcctcaccacatctggccaaccctgactgatgaggagtggatcaaggttgag
gtgcagctaaaggatctcatccttgctgactacggcaagaagaacaatgtgaatgttgca
tccctgacacagtcggaaatccgagacatcatcctgggcatggagatctctgccccctct
cagcagagacagcagattgcagaaattgagaagcaaaccaaggagcagtcgcagctgaca
gccacgcagacccgcactgtcaacaaacacggcgatgaaatcatcacctctacaaccagc
aactacgaaacccagactttctcctccaagactgagtggcgagtcagagcaatttctgct
gccaaccttcacctgcgcacaaaccacatttatgtttcgtcagacgatataaaggaaacg
ggctacacctacattcttcccaagaacgtgttgaagaaattcatctgcatctcagacctg
cgggcccagattgcaggttacctgtacggagtgagccctccagataacccccaggtgaag
gagatccggtgcattgtcatggtgccacagtggggaacacaccagactgtgcatctccca
gggcagctgccgcagcacgagtatctcaaggaaatggaacctctggggtggattcacacc
caaccaaacgagtcgccccagctctcaccacaggatgtcactacccacgctaaagttatg
gctgacaacccctcctgggatggggagaagaccatcatcatcacctgcagtttcacacca
ggctcctgcacgctgacagcctacaaactgactccgagtggctacgagtggggccggcag
aacacggacaaagggaacaaccccaagggctacctgccatcccattacgagagggtgcag
atgctgctgtcggatcgcttcctcggcttcttcatggtcccggcacaagggtcctggaac
tacaacttcatgggtgttcgccacgaccccaacatgaagtacgagctgcagctcgccaac
cccaaggagttttaccacgaggtccatcgcccttcccacttcctcaacttcgcgctgctc
caggagggagaggtttactctgccgaccgggaggacctatacgcctga
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integrated database retrieval system
