Cuculus canorus (common cuckoo): 104058643
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Entry
104058643 CDS
T08597
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03030
DNA replication
cuca03420
Nucleotide excision repair
cuca03430
Mismatch repair
cuca03440
Homologous recombination
cuca03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104058643 (RPA1)
03420 Nucleotide excision repair
104058643 (RPA1)
03430 Mismatch repair
104058643 (RPA1)
03440 Homologous recombination
104058643 (RPA1)
03460 Fanconi anemia pathway
104058643 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cuca03000
]
104058643 (RPA1)
03032 DNA replication proteins [BR:
cuca03032
]
104058643 (RPA1)
03400 DNA repair and recombination proteins [BR:
cuca03400
]
104058643 (RPA1)
Transcription factors [BR:
cuca03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
104058643 (RPA1)
DNA replication proteins [BR:
cuca03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
104058643 (RPA1)
DNA repair and recombination proteins [BR:
cuca03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
104058643 (RPA1)
MMR (mismatch excision repair)
104058643 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
104058643 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
CATSPERD-E_C
DUF4939
Motif
Other DBs
NCBI-GeneID:
104058643
NCBI-ProteinID:
XP_009558493
LinkDB
All DBs
Position
20:complement(5402721..5426549)
Genome browser
AA seq
614 aa
AA seq
DB search
MSVRLSEGAIAAIMQGESISKPVLQVINTRAIATGNGPPRYRVLMSDGVNTLSSFMLATQ
LNSLVEEERLAAQCVCQVNRYIVNCLKDGRRVVILMDVDVLKTADKVGGNIGNPVPYNEG
QGQQRPSAPAANPAPSKPQQANGNFSVPGPAAPKYHPPSNQFSKASAPGSMKTPVGSQAK
VVPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFSIELVDESGEIRATAFNDQAD
KFFPLIELNKVYYFTKGNLKTANKQYSAVKNDYEITFTNETSVVPCDDAQHLPSVQFDFV
SIADLENTPKDSIVDIIGICKSYEDVTKIVTKANNREVSKRNVHLMDTSGKLVTATLWGN
EAEQFDGSRQPVVAIKGARVSDFGGRSLSVMSSSTVVINPDSPEAFKLRGWFDAEGQLLE
GASISDVRGGPAAGANTNWKTLYEAKSENLGQGDKADYFSCVGTVVHLRKENCMYQACPS
QDCNKKVIDQQNGLYRCEKCDREFPNFKYRLMLLVTIADCLDYQWVTCFQDTAEFILGQN
AAFMGELKEKNEQAFEEVFQNANFNTYEFRIRVKLETYNDESRIKATALDVKPVNYREYS
KRLIASIRRNAQLG
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgcggctcagcgagggcgccattgcggccataatgcaaggggagagcatttcc
aagcccgtgctgcaagtcattaatacacgggctattgctacgggaaatgggcccccgcgt
taccgagtgttgatgagcgatggggttaacacactctcctcattcatgttagcaacgcag
ctgaactctctggtggaagaggaacgcttagcggcccagtgtgtttgccaagttaacaga
tacatcgttaactgcctgaaagatggaaggcgagtggttatactgatggatgtagatgtg
ctgaaaaccgctgataaggttggtgggaatattggcaacccggtgccgtacaatgaaggg
caagggcagcaacgtccttcagctccagctgcaaacccagcacccagtaaaccacagcaa
gcaaacggcaatttttcagtaccaggtcctgctgctccaaagtaccatcctccctcaaac
cagttcagtaaagccagcgctcccggctcaatgaagacaccagtggggtcccaggccaaa
gtagtgccgattgccagcttgaacccgtaccagtccaagtggacaatttgtgctcgtgtt
acccaaaaaggccagatccgcacgtggagcaactcccgtggtgaaggaaagctcttttct
atagagctggttgatgaaagcggtgagattagagctactgcattcaatgatcaagcagac
aagttctttccactcattgaattgaacaaggtatattattttactaagggcaatttgaag
actgctaacaagcaatattcagctgttaagaatgactatgagatcacattcactaatgag
acttcagttgtgccctgtgatgatgcccagcatcttccatctgttcagtttgactttgta
tccatcgctgacttggagaacacaccgaaagactcaattgttgatataattggaatttgt
aagagctatgaagatgtcactaaaattgtaacaaaagctaacaatagggaggtatcgaag
aggaacgtgcacctgatggacacatcagggaaactggtgacggctacgctatggggcaat
gaggctgagcagtttgatggttctagacaacctgtggtagccatcaaaggagcccgagtc
tctgattttggtggtagaagcctgtctgtcatgtcctcgagtacagttgtcatcaaccct
gatagcccagaggcttttaagctcagaggatggtttgacgccgaggggcagctgctggaa
ggtgcctcgatctcggatgtgagaggtgggccagcggcaggggccaacaccaattggaaa
actttgtatgaagccaaatctgagaacttgggccaaggagataaggcagattattttagc
tgtgtgggcacagtcgtacatctgcgcaaagagaactgtatgtaccaggcatgtccctcg
caggattgcaacaagaaagtgatagaccagcaaaatggcctgtatcgttgtgaaaagtgc
gatcgtgaattccccaacttcaagtaccgcctgatgcttctggtgaccattgcggactgt
ctagactatcagtgggtgacttgtttccaggacacagcagaattcattcttgggcagaat
gcggctttcatgggagagctaaaggaaaagaacgagcaggcgtttgaagaagtgttccaa
aatgcaaacttcaacacgtatgagttcaggatccgagtcaaactggagacttacaatgac
gaatctcgtattaaggctacagcattggatgtcaagcctgtgaactacagagaatacagc
aagagattgattgcaagcatcaggagaaacgctcagctaggctga
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